CmaCh04G022120 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G022120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCoiled-coil domain-containing protein 92
LocationCma_Chr04: 15437373 .. 15438769 (-)
RNA-Seq ExpressionCmaCh04G022120
SyntenyCmaCh04G022120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTTCTAATGTAATCCTTTGGTTGATCATGAGAATGAAAGTAATTTGTCAGATTTCTCTGTCTTTGATTTCTATGTTACAGTTTAGGTAACAATTTGACCTTTGTAATTTAAAATTTGTAATAATTTGATATCTATTGATAGAAATACTATTAACATACCACGGAATTAGGGATCAAATATTTTAAACTACGAAGACTCGATTTTTTATTGATAAAAGTTGATGTTTTATTTTGATATTATCTGTGACTAAAAAACTAAGACTTCGAAGATGAATTAGAACACGAAAATGTAATAGTCGAAGTCCTCCACCAATAGATATGGGATCTCATAATCCACTCTCTTTATCAAGAATGTTTCATTTCTCTTTTCAACTGACGTGGATCTCATAATTCACTCCCCTTGGAGGCCAGCGTTCTCGCTAACACATCACTCAGTGTCTAGCTTGTATACCATTTGTAACAGTTAAAACCCACCACTAGCAGATATTATCCGTTTTGGCTCATTACATGTCGCCGCCAGCCTCACGATTTTAAAACGCATCGACTTAAGAAAATTTTTCACACTCATACAACTGTGTCCTAACTGAAATTATTAATATCACTCTCCTTGGAGGCCAGCGTTTACGCTGACACATTGCTTAGTGTCTGACTCATATACCATTTGTAACAGTTAAAATCTACCACTATCATATATTATCTGTTTTGGCTCATTACATATCGCTGTCAGTCTCATGATTTTAAAACGCATTGGATTGAGAAAATTTTTCACACACTTGTAAGGAATAAGGAATAAGGAATGAGAGACAGACATTGTTGCAAGAGCAAAGTCACAAATGAACCTCATACGGAGAAATGGCTGAGTCCTAACTGAAATGGTTAATATCCAAGAAGGAAATGTGGAATAGGTCCCAGTTCTACAAGTTCTCTTCTAAATCATGGTTTCATGCAAGAGCAGCAGCAAGGAGTGTTTGCTTCTTAATTTAAAAAGAAACTCATGATTTAGAAAGCCTCATTTACTCTACAAAAAGGCAACCGACTACTGGACAAGAGGATAGGATTTGAACTGAAAGTTTCATCATAAGCTGTTCTCCCAGTATCCTGTTCTTTCCAAATTCTACCAGTCACCCTAAGCTTCAGTTCCTTACGGTCTCCACCGGAGAAGAAGAGAGCCATGTTACATTGGATAATGAGCCCGTCGAAACTATCCCGAACTTTTCGATGGCTGTCCCTGATGCTTCTGGGCACCCCTTGCCATACTATCTTCCTCCCATTTCCTCCCACTTCGAGACTATAGCTGTAGTTCTTTGCATCATCATCATCGCCCATGAACCGCAAGAATGCTATGTATGCTGGAGCCATTCCGAGCTGGAAAGCTTCGAAATGCAGGCAAAA

mRNA sequence

ATGTGTGTTCTAATTCACCCTAAGCTTCAGTTCCTTACGGTCTCCACCGGAGAAGAAGAGAGCCATGTTACATTGGATAATGAGCCCGTCGAAACTATCCCGAACTTTTCGATGGCTGTCCCTGATGCTTCTGGGCACCCCTTGCCATACTATCTTCCTCCCATTTCCTCCCACTTCGAGACTATAGCTGTAGTTCTTTGCATCATCATCATCGCCCATGAACCGCAAGAATGCTATGTATGCTGGAGCCATTCCGAGCTGGAAAGCTTCGAAATGCAGGCAAAA

Coding sequence (CDS)

ATGTGTGTTCTAATTCACCCTAAGCTTCAGTTCCTTACGGTCTCCACCGGAGAAGAAGAGAGCCATGTTACATTGGATAATGAGCCCGTCGAAACTATCCCGAACTTTTCGATGGCTGTCCCTGATGCTTCTGGGCACCCCTTGCCATACTATCTTCCTCCCATTTCCTCCCACTTCGAGACTATAGCTGTAGTTCTTTGCATCATCATCATCGCCCATGAACCGCAAGAATGCTATGTATGCTGGAGCCATTCCGAGCTGGAAAGCTTCGAAATGCAGGCAAAA

Protein sequence

MCVLIHPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVVLCIIIIAHEPQECYVCWSHSELESFEMQAK
Homology
BLAST of CmaCh04G022120 vs. ExPASy TrEMBL
Match: A0A7J6HPJ6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028973 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 6   HPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVV 65
           HPKLQ   VS  E ESH++LDNE ++T+ NFS+ VP+AS +PLPY+LPP+S+HF+T+ + 
Sbjct: 136 HPKLQLFPVSPREGESHISLDNETIKTVTNFSVTVPNASWNPLPYHLPPMSTHFKTVVIT 195

Query: 66  LCIIIIAHEPQECYVCWSHSELESFEMQAK 96
           LC+ II H+P+E YV  S +ELESF+MQ K
Sbjct: 196 LCLNIITHKPKESYVDGSCTELESFKMQTK 225

BLAST of CmaCh04G022120 vs. ExPASy TrEMBL
Match: A0A7J6HG47 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_023204 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 6   HPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVV 65
           HPKLQ   VS  E ESH++LDNE ++T+ NFS+ VP+AS +PLPY+LPP+S+HF+T+ + 
Sbjct: 136 HPKLQLFPVSPREGESHISLDNETIKTVTNFSVTVPNASWNPLPYHLPPMSTHFKTVVIT 195

Query: 66  LCIIIIAHEPQECYVCWSHSELESFEMQAK 96
           LC+ II H+P+E YV  S +ELESF+MQ K
Sbjct: 196 LCLNIITHKPKESYVDGSCTELESFKMQTK 225

BLAST of CmaCh04G022120 vs. ExPASy TrEMBL
Match: A0A5A7QNC9 (Pepsin A-4 OS=Striga asiatica OX=4170 GN=STAS_23370 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 8.5e-13
Identity = 33/70 (47.14%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 5   IHPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAV 64
           ++P+ QF  + T E+ESHV L++EPV+T+ + S+++P+ASGH LP++LP ++   E IAV
Sbjct: 35  LNPEFQFFPIPTREKESHVALNDEPVKTVTDLSVSIPNASGHTLPHHLPAVAPDLEAIAV 94

Query: 65  VLCIIIIAHE 75
           + C+++IAHE
Sbjct: 95  IFCLVVIAHE 104

BLAST of CmaCh04G022120 vs. ExPASy TrEMBL
Match: A0A5A7QPF5 (Semaphorin-6D OS=Striga asiatica OX=4170 GN=STAS_23368 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 7   PKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVVL 66
           P+ QF  ++T E+ESHV L++EPV+T+ + S+AVP+ASGH LP +LPPI+   E IAV+ 
Sbjct: 39  PEFQFFPIATREKESHVALNDEPVKTVADLSVAVPNASGHTLPRHLPPIAPDLEAIAVIF 98

Query: 67  CIIIIAHE 75
            +++IAHE
Sbjct: 99  RLVVIAHE 106

BLAST of CmaCh04G022120 vs. ExPASy TrEMBL
Match: A0A5A7NXG4 (Coiled-coil domain-containing protein 92 OS=Striga asiatica OX=4170 GN=STAS_00754 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10
Identity = 34/88 (38.64%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 8   KLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVVLC 67
           +L+F++VSTGE+E H+ L +E V T+P+ ++ V +AS  P P  LPP++S FE +AVV  
Sbjct: 17  ELEFVSVSTGEKEGHIALYDEAVVTVPDLAVGVANASWGPFPCELPPVASDFEAVAVVSS 76

Query: 68  IIIIAHEPQECYVCWSHSELESFEMQAK 96
           + +++H+ ++ +V   HS+L+  +++A+
Sbjct: 77  LRLVSHKTEKGHVNGCHSQLKGLKVEAE 104

BLAST of CmaCh04G022120 vs. NCBI nr
Match: KAF4393400.1 (hypothetical protein F8388_023204 [Cannabis sativa])

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 6   HPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVV 65
           HPKLQ   VS  E ESH++LDNE ++T+ NFS+ VP+AS +PLPY+LPP+S+HF+T+ + 
Sbjct: 136 HPKLQLFPVSPREGESHISLDNETIKTVTNFSVTVPNASWNPLPYHLPPMSTHFKTVVIT 195

Query: 66  LCIIIIAHEPQECYVCWSHSELESFEMQAK 96
           LC+ II H+P+E YV  S +ELESF+MQ K
Sbjct: 196 LCLNIITHKPKESYVDGSCTELESFKMQTK 225

BLAST of CmaCh04G022120 vs. NCBI nr
Match: KAF4396659.1 (hypothetical protein G4B88_028973 [Cannabis sativa])

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22
Identity = 52/90 (57.78%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 6   HPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVV 65
           HPKLQ   VS  E ESH++LDNE ++T+ NFS+ VP+AS +PLPY+LPP+S+HF+T+ + 
Sbjct: 136 HPKLQLFPVSPREGESHISLDNETIKTVTNFSVTVPNASWNPLPYHLPPMSTHFKTVVIT 195

Query: 66  LCIIIIAHEPQECYVCWSHSELESFEMQAK 96
           LC+ II H+P+E YV  S +ELESF+MQ K
Sbjct: 196 LCLNIITHKPKESYVDGSCTELESFKMQTK 225

BLAST of CmaCh04G022120 vs. NCBI nr
Match: GER46332.1 (pepsin A-4 [Striga asiatica])

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12
Identity = 33/70 (47.14%), Postives = 55/70 (78.57%), Query Frame = 0

Query: 5   IHPKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAV 64
           ++P+ QF  + T E+ESHV L++EPV+T+ + S+++P+ASGH LP++LP ++   E IAV
Sbjct: 35  LNPEFQFFPIPTREKESHVALNDEPVKTVTDLSVSIPNASGHTLPHHLPAVAPDLEAIAV 94

Query: 65  VLCIIIIAHE 75
           + C+++IAHE
Sbjct: 95  IFCLVVIAHE 104

BLAST of CmaCh04G022120 vs. NCBI nr
Match: GER46337.1 (semaphorin-6D [Striga asiatica])

HSP 1 Score: 81.3 bits (199), Expect = 5.1e-12
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 0

Query: 7   PKLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVVL 66
           P+ QF  ++T E+ESHV L++EPV+T+ + S+AVP+ASGH LP +LPPI+   E IAV+ 
Sbjct: 39  PEFQFFPIATREKESHVALNDEPVKTVADLSVAVPNASGHTLPRHLPPIAPDLEAIAVIF 98

Query: 67  CIIIIAHE 75
            +++IAHE
Sbjct: 99  RLVVIAHE 106

BLAST of CmaCh04G022120 vs. NCBI nr
Match: GER25179.1 (coiled-coil domain-containing protein 92 [Striga asiatica])

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-10
Identity = 34/88 (38.64%), Postives = 63/88 (71.59%), Query Frame = 0

Query: 8   KLQFLTVSTGEEESHVTLDNEPVETIPNFSMAVPDASGHPLPYYLPPISSHFETIAVVLC 67
           +L+F++VSTGE+E H+ L +E V T+P+ ++ V +AS  P P  LPP++S FE +AVV  
Sbjct: 17  ELEFVSVSTGEKEGHIALYDEAVVTVPDLAVGVANASWGPFPCELPPVASDFEAVAVVSS 76

Query: 68  IIIIAHEPQECYVCWSHSELESFEMQAK 96
           + +++H+ ++ +V   HS+L+  +++A+
Sbjct: 77  LRLVSHKTEKGHVNGCHSQLKGLKVEAE 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6HPJ61.5e-2257.78Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_028973 PE=4 SV=1[more]
A0A7J6HG471.5e-2257.78Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_023204 PE=4 SV=1[more]
A0A5A7QNC98.5e-1347.14Pepsin A-4 OS=Striga asiatica OX=4170 GN=STAS_23370 PE=4 SV=1[more]
A0A5A7QPF52.5e-1252.94Semaphorin-6D OS=Striga asiatica OX=4170 GN=STAS_23368 PE=4 SV=1[more]
A0A5A7NXG41.0e-1038.64Coiled-coil domain-containing protein 92 OS=Striga asiatica OX=4170 GN=STAS_0075... [more]
Match NameE-valueIdentityDescription
KAF4393400.13.2e-2257.78hypothetical protein F8388_023204 [Cannabis sativa][more]
KAF4396659.13.2e-2257.78hypothetical protein G4B88_028973 [Cannabis sativa][more]
GER46332.11.7e-1247.14pepsin A-4 [Striga asiatica][more]
GER46337.15.1e-1252.94semaphorin-6D [Striga asiatica][more]
GER25179.12.1e-1038.64coiled-coil domain-containing protein 92 [Striga asiatica][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G022120.1CmaCh04G022120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development