CmaCh04G021320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G021320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA-dependent RNA polymerase
Location	Cma_Chr04: 14906857 .. 14911076 (+)
RNA-Seq Expression	CmaCh04G021320
Synteny	CmaCh04G021320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACGAATGGGAAGACGATCGAGGTTTTTGGATTCCGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACCGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGAAACCCAAGGACGGGAAAGGCCGGTTGACATTCGCGAGGGTGGAATTCAGGAGCAAGGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGGGGCTGTGGTTCGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGATTTCGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAAGAGTGGAGCGTGGAATATGGAAATGGAATGAGGAAACTGTGGTTTTATTTGAGTTATGGGGTTGAAGATGATGACTATAAAATGGAGCTCCGGTTTGAGAACATTTTGGGAGTTCAGCTTCGTTGCCCTCACAATTCATCCTCCAATCTTTTTCTCATTCAGGTCTCTTACCTTTTCCTTTTAAATTTACAACTTATATAAAGATTAAGTTCTTTCATGTAAAAAAAAACATTTATAATATATTAAATTTATGACTTAATTTAAATCTATCCGAAAATGAGCATACTTTAGCCTTTATTTCTTAAAAATCTATTTACCAACATTTTTAATATATTAAATAAAGTATATTAGAAATAATAAGACTTATGTTATGTTCATAATTGGCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCGTCTTGTATTGGACAATCCTTCTCTCTGTGCTTGGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACTTTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCACTTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAAGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTAGTACGTCGATTTATTGATGATATAGATAATTTTCTTCGCGTGTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGGGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAATGCAGCAGATATCAGGGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGCAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCATTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTGATCAACCTTCTGTCCACTCTTGGAATTCGGGACGACGTTTTTGTGAAACAACAAAAGAAGGCTGTTGATCAACTTGATTCTATTCTAAGAGATCCATCGAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTGTTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCAGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTAGATGAAACCCGGACCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCCGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGTAAGCACGCTTATTGTGGATGAATTGTTTATGTATTCATCACATTTCACGGATTCATGTTCATATGTTTGGCAAATTCATGCACTTTACATATATGTTATAGTAATATTTGTAATATGTGATGTTAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACACTTGAGGTATGCTTTCAGGAACTGTTTACTTCTAGTGCAAACACACACTTCATCTTTTTCTTTCTAATAATATAGATTGCTGATTTGATTCACAGATTCGAACAGATTGTATTGTGAAGCTTGAATAACATGGTATCATTTGAATACAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGCATTGCAAATGCTCACACTGTCTTTGCTGATATGAAGCCTAAGAAGGCGATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCGAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATGAGTATCCAGACTTCATGGAAAAGCCTAATAAACGGACTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGATATCAACAACATTGAAACCTTCACTAGGGAAGTTGCTGTCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGAATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAGACAGAACCTGAATTAGTTAGTGGAAATATTTTGAGAATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGCAAGTAAGTCTATCTACAACAACAACAAGGGCGAAGACAATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACGTATCACCCAAACTTCTGGGGTCGATACAATGAAGGCATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGATAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAGCTTTAATGGTCAATAATTTTATGAAGTATTTTATTAAGGTTCTCTAATGGTTAAAGTAATAGTAAGGAGATGGTGATGTCTGTGTCCTTGAGTTCTAAGATGATTGTGTCCTTGAGTTCTAAGATGATGGTGATGAAGCTATAGTTTATATTGTACTAAAGGAAAAGAATTTACAGCTTTTTGTTTGAAGTTTTATGCTTCATTAGATGGTAATAGTTGTGTAAAAGCAAGCTTGAGATCTGGAAATGTGGCTTATTTGTATCTCTTACATTATATTTTCTATAATATGATCAATGGAGTTTGAGACAAATTGTTATAGTTCTTATAGAACCGATCAGATTGTGTAATTTCCTGTTGTACAATGAATCTATATGGG

mRNA sequence

ATGGGTACGAATGGGAAGACGATCGAGGTTTTTGGATTCCGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACCGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGAAACCCAAGGACGGGAAAGGCCGGTTGACATTCGCGAGGGTGGAATTCAGGAGCAAGGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGGGGCTGTGGTTCGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGATTTCGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAAGAGTGGAGCGTGGAATATGGAAATGGAATGAGGAAACTGTGGTTTTATTTGAGTTATGGGGTTGAAGATGATGACTATAAAATGGAGCTCCGGTTTGAGAACATTTTGGGAGTTCAGCTTCGTTGCCCTCACAATTCATCCTCCAATCTTTTTCTCATTCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCGTCTTGTATTGGACAATCCTTCTCTCTGTGCTTGGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACTTTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCACTTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAAGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTAGTACGTCGATTTATTGATGATATAGATAATTTTCTTCGCGTGTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGGGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAATGCAGCAGATATCAGGGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGCAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCATTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTGATCAACCTTCTGTCCACTCTTGGAATTCGGGACGACGTTTTTGTGAAACAACAAAAGAAGGCTGTTGATCAACTTGATTCTATTCTAAGAGATCCATCGAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTGTTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCAGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTAGATGAAACCCGGACCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCCGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACACTTGAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGCATTGCAAATGCTCACACTGTCTTTGCTGATATGAAGCCTAAGAAGGCGATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCGAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATGAGTATCCAGACTTCATGGAAAAGCCTAATAAACGGACTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGATATCAACAACATTGAAACCTTCACTAGGGAAGTTGCTGTCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGAATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAGACAGAACCTGAATTAGTTAGTGGAAATATTTTGAGAATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGCAAGTAAGTCTATCTACAACAACAACAAGGGCGAAGACAATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACGTATCACCCAAACTTCTGGGGTCGATACAATGAAGGCATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGATAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAGCTTTAATGGTCAATAATTTTATGAAGTATTTTATTAAGGTTCTCTAATGGTTAAAGTAATAGTAAGGAGATGGTGATGTCTGTGTCCTTGAGTTCTAAGATGATTGTGTCCTTGAGTTCTAAGATGATGGTGATGAAGCTATAGTTTATATTGTACTAAAGGAAAAGAATTTACAGCTTTTTGTTTGAAGTTTTATGCTTCATTAGATGGTAATAGTTGTGTAAAAGCAAGCTTGAGATCTGGAAATGTGGCTTATTTGTATCTCTTACATTATATTTTCTATAATATGATCAATGGAGTTTGAGACAAATTGTTATAGTTCTTATAGAACCGATCAGATTGTGTAATTTCCTGTTGTACAATGAATCTATATGGG

Coding sequence (CDS)

ATGGGTACGAATGGGAAGACGATCGAGGTTTTTGGATTCCGGCGAGAGGTGAGCGCCGGCGAGGTGAAGGAATTTATGGAGAATCACACCGGAGAGGGAACGGTATCGAAGGTGAGGATTTCGAAACCCAAGGACGGGAAAGGCCGGTTGACATTCGCGAGGGTGGAATTCAGGAGCAAGGTGGCGGCGGAGTACGTGGTGGAGAAGGCGGAGGCGGAGGAGGGGCTGTGGTTCGGAAGGTGGTATCTGAAGGCGAGGGGAGTGGAGAGGGAGATGAGGGTGGAGAGAATGGAGAAGGTGAGGGTGCAGTTGGGAAGCGTGATTTCGAAGGAAGAAATGAGGGTGATTTGGAGAGGGGAAGAGTGGAGCGTGGAATATGGAAATGGAATGAGGAAACTGTGGTTTTATTTGAGTTATGGGGTTGAAGATGATGACTATAAAATGGAGCTCCGGTTTGAGAACATTTTGGGAGTTCAGCTTCGTTGCCCTCACAATTCATCCTCCAATCTTTTTCTCATTCAGTTGCAGGGTGCTCCACGGATTTTCAAGAAATGTCCTTCTTCTTCGTCTTCTTCCTCTCAATTCTATTCCAAGGAATCAACTGGTTTCCGCTGGATCAGAGATGTGGATTTCACTCCATCGTCTTGTATTGGACAATCCTTCTCTCTGTGCTTGGAAGTTTCTCCTGGAGATCAGCTTCCTTCTTTCTTCCAAACTTTGGTCGGCTACAAAGAAATCTATGGCCCTTTCAAACTGTCCACAGGTTCTGCTTTCTCTTCCACTTCAAATCTCGTTCCTATCGTTACTCCACCGCAACCATTTGATATCCCTTATAAAATTTTGTTCAAAATCAATGCCCTAGTTCAACATGGTTATCTTCCTGGATCAGCGCTGGATGATAAATTCTTCCGCCTGGTTGATCCCAGTCGATTTCGTTCTGACTACATTGAGTATGCCCTAGAAAAATTGTTTAGTTTGAAGGAATGTTGCTATGAACCACAGAAATGGCTCAAGCAGCAATATCTGTCATTCTGCAGCTCTATGCAGCTTCCATGGAAAGCTAATATTTCTTTGGATGATAGCCTCGTCTATGTGCATAGGGTTCAAATTACACCTGCTAAGGTGTATTTTCGTGGTCCGGAGGCGAATCTTTCTAACAGAGTAGTACGTCGATTTATTGATGATATAGATAATTTTCTTCGCGTGTCTTTTGTTGATGAGGAGTTGGATAAAATTCATTCCAGTGATCTGTCTCCCCGTACGTCTACTGAAAAGATTGAAAGAACTAGGGTTTATGATCGAATATTATCTGTTTTAAGAAATGGTATAGTCATTGGTGGCAAGAAGTTTGAGTTTCTTGCTTTCTCGGCAAGTCAACTTCGTGAAAATTCGTTTTGGATGTTTGCTTCGAGGGAGGGGCTTAATGCAGCAGATATCAGGGAGTGGATGGGTGACTTTCGTGAGATAAGAAATGTGGCGAAATATGCTGCTCGACTTGGTCAATCTTTTGGCTCGTCCAGAAAAACTTTGTGTGTTGAAGAAAATGAAATTGAAGTTATTCCTGATGCAGAAGTTGAACGGAAGAACATCAAATATTGTTTCTCTGATGGGATTGGAAAGATATCCGAAGCATTGGCTGAGATGGTTGCTGAAAAATGTGGTTTGATCAGTCATACACCATCTGCATTCCAGATCCGATATGCTGGATACAAGGGCGTTGTTGCTGTTGATCCCACATCCAAAAAGAAATTGTCATTAAGAAAGAGTATGTTGAAGTATATGTCACTTGACACTCAACTTGATGTTTTGTCATGGAGCAAGTACCAACCCTGTTTTCTCAACCGTCAGGTGATCAACCTTCTGTCCACTCTTGGAATTCGGGACGACGTTTTTGTGAAACAACAAAAGAAGGCTGTTGATCAACTTGATTCTATTCTAAGAGATCCATCGAAGGCATTAGAAGTGTTGGAATTGATGTCCCCGGGGGAAATGACTAGTGTTCTGAAGGACATGCTTTTGTTTTACAATCCACACGAAGAGCCTTTTCTAAATATGATGCTACGGACGTTTCGAGCAGATAAATTGTTAGATTTGAGGACCAAATCAAGGATATTTGTTCCTAAGGGAAGGACAATGATGGGTTGCCTAGATGAAACCCGGACCCTTGAGTATGGGCAGGTGTTTATTCACTGCTCTGTCCCTGGGAGATCAAGCGAAAGTAATTTTGTTGTTAAAGGTAAAGTGGTGGTTGCTAAAAATCCCTGTTTACACCCAGGGGATGTGCGTGTGCTCGATGCCGTTGATGTGAAAACTCTGCATCATATGGTGGATTGTGTTGTTTTTCCACAGAAAGGGAAAAGGCCTCACCCAAATGAATGCTCTGGGAGTGATTTAGATGGTGACTTATACTTTGTTTGTTGGGATCCGGAGTTGACTTGTATTAGACCAATTAAACCTATGAGCTACGAGCCTGCACCAACCATTCAGTTGGATCATGATGTGACACTTGAGGAAGTGCAGGAATACTTTGCCAACTACATGGTGAATGATGGTCTTGGTGGCATTGCAAATGCTCACACTGTCTTTGCTGATATGAAGCCTAAGAAGGCGATGAGTGCTGAATGCATTGAACTTGCAAAATTATTTTCAATTGCTGTTGACTTCCCGAAAACTGGTGTGCCAGCAAACTTGCCGCGCTCTCTTCGTGTCCATGAGTATCCAGACTTCATGGAAAAGCCTAATAAACGGACTTATATATCGAATGGTGTTATCGGGAAGCTTTTTCGAGGAGTGAAAGATGTTTCTTCAGATATCAACAACATTGAAACCTTCACTAGGGAAGTTGCTGTCAAGTGCTACGATCCAGACATGGAAGTTATGGGTTTTGAAAATTATTTAAGTGAAGCTTTTGACTACAAAAGAATGTACGACTTCAAGTTGGGTAACCTAATGGATTATTATGGTATAGAGACAGAACCTGAATTAGTTAGTGGAAATATTTTGAGAATGGGAAAGTCTTTCGATAAAAGGAATGACATGGAACAAATTAGCCTTGCCATGAGGTCACTAAGAAAGGAGGCCAGGGGTTGGTTCAACGAGAAGGCAAGTAAGTCTATCTACAACAACAACAAGGGCGAAGACAATGAATATGCAAAAGCATCCGCTTGGTACCATGTTACGTATCACCCAAACTTCTGGGGTCGATACAATGAAGGCATGCAAAGAGATCATTTTTTGAGTTTTCCATGGTGTGTTTCTGATAAGCTTATTCAAATCAAAAGGGAGAAGATGGAGTCTTCCCCAGTGTCATCTCTGATACACAAATTTGGTAAGCTGAGTTTCTACTAG

Protein sequence

MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY

Homology

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BLAST of CmaCh04G021320 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1217.6 bits (3149), Expect = 0.0e+00
Identity = 634/1105 (57.38%), Postives = 793/1105 (71.76%), Query Frame = 0


Query: 5    GKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAE 64
            GKTI+VFGF   VSA EVK+F+E  TG GTV  +++ +PK G G   +A V+F S+    
Sbjct: 2    GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVYAIVQFTSERHTR 61

Query: 65   YVVEKAEAEEGLWFGRWYLKARGVEREM------RVERMEKVRVQLGSVISKEEMRVIWR 124
             ++    A E L++GR YLKA  VE+++       +  +  +++  G  +S ++   +W 
Sbjct: 62   LII--TAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 121

Query: 125  GEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGA 184
             ++  V +G GMRKL F  S+     DY++EL +ENI  + L  P   SS   +IQ+ GA
Sbjct: 122  AQDVCVSFGIGMRKLHF--SFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 181

Query: 185  PRIFKKCPSSSS---SSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPS 244
            P+IF+K     +       FYS + +  +WIR  DFT SSCIGQS + CLE+     +P 
Sbjct: 182  PKIFEKEDQPINLLFGIMDFYS-DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 241

Query: 245  FFQTLVGYKE-IYGPFKLSTGSAFSSTSN-LVPIVTPPQPFDIPYKILFKINALVQHGYL 304
            F +    Y E     F + +GS++SS +N LVP+V PP  F +P++ILFK+N LVQ+  L
Sbjct: 242  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 301

Query: 305  PGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
             G ALD  F+RL++  ++    I++ LEKLF L ECCYEP  WL+ +Y  + S  +LP  
Sbjct: 302  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 361

Query: 365  ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIH 424
              ISLDD LVY++RVQ+TPA+VYF GPE N+SNRV+R +   I+NFLRVSFVDE+L+K+ 
Sbjct: 362  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 421

Query: 425  SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 484
            S DLSPR+ST++  RT++YDRI SVLR+GIVIG KKFEFLAFS+SQLRENS WMFA  + 
Sbjct: 422  SMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDR 481

Query: 485  LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYC 544
            + AA IR WMGDF  IRNVAKYAARLGQSF SSR+TL V  +EIEVIPD E+     +Y 
Sbjct: 482  ITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYV 541

Query: 545  FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 604
            FSDGIGKIS   A  VA KCGL   +PSAFQIRY GYKGVVAVDP S KKLSLRKSM K+
Sbjct: 542  FSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKF 601

Query: 605  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKAL 664
             S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF K+Q++ VD+LD+IL  P +A 
Sbjct: 602  ESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAH 661

Query: 665  EVLELMSPGEMTSVLKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 724
            E L LM+PGE T++LK ++L  Y P  EPFL+MML+ FRA KLL+LRTK+RIF+  GR+M
Sbjct: 662  EALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSM 721

Query: 725  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
            MGCLDETRTLEYGQV +  S P R     F++ G VVVAKNPCLHPGDVRVL AV+V  L
Sbjct: 722  MGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVPAL 781

Query: 785  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
            +HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL   R  +PM Y P PT  LDH
Sbjct: 782  NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDH 841

Query: 845  DVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTG 904
            DVT+EEV+EYFANY+VND LG IANAHT FAD +P KA S  CIELAK FS AVDFPKTG
Sbjct: 842  DVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTG 901

Query: 905  VPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKC 964
            V A +P+ L V EYPDFMEKP+K TY S  VIGKLFR VK+ +  + +I++FT +VA K 
Sbjct: 902  VAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKS 961

Query: 965  YDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1024
            YD DMEV GFE Y+ EAF  K  YDFKLGNLMDYYGI+TE E++SG I+RM KSF KR D
Sbjct: 962  YDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD 1021

Query: 1025 MEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEG 1084
             E I  A+R+LRKE         + S++N ++ E+NE AKASAWYHVTYH ++WG YNEG
Sbjct: 1022 AESIGRAVRALRKE---------TLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEG 1081

Query: 1085 MQRDHFLSFPWCVSDKLIQIKREKM 1098
            + RDHFLSF WCV DKL++IK+  +
Sbjct: 1082 LNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]

BLAST of CmaCh04G021320 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 916.8 bits (2368), Expect = 2.4e-265
Identity = 460/724 (63.54%), Postives = 563/724 (77.76%), Query Frame = 0


Query: 375  VYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRT-STEKIERTRVYD 434
            VYF GPE N+SNRVVR F  DI+NFLR+SFVDE+ +K+ ++DLSPR+ S     RT +Y 
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 435  RILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFREIRNVA 494
            R+LSVL +GI IGGK FEFLAFS+SQLR+NS WMFASR+GL A+DIR WMGDFR IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 495  KYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGKISEALAEMVAEKC 554
            KYAARLGQSF SS +TL V++ E+E I D    +   ++ FSDGIGKIS A A  VA KC
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAMKC 188

Query: 555  GLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFL 614
             L    PSAFQIRY GYKGVVAVDPTS+ KLSLRKSMLK+ S +  +DVL++SKYQP FL
Sbjct: 189  NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248

Query: 615  NRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLL 674
            NRQ+I LLSTLG+RD VF ++Q++AV+QL+ ++ DP  A+E +ELM  GE+T+ +K++LL
Sbjct: 249  NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308

Query: 675  F-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCS 734
              Y P +EP+L+M+L+TFRA KLL+L+TKSRI +PKGR MMGCLDETRTL+YGQVFI  +
Sbjct: 309  CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR-A 368

Query: 735  VPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNE 794
              G +    F V GKVV+AKNPCLHPGD+R+L AVDV  LHHM +CVVFPQ+G RPHPNE
Sbjct: 369  TSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHPNE 428

Query: 795  CSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQEYFANYMVNDGL 854
            CSGSDLDGD+YFV WDP L   R + PM Y PAPT  LDHDVT+EEV+EYF NY+VN+ L
Sbjct: 429  CSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNESL 488

Query: 855  GGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEK 914
            G IANAH VFAD +  KA S+ CIELAKLFSIAVDFPKTGVPA +P  L V EYPDFMEK
Sbjct: 489  GMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFMEK 548

Query: 915  PNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVMGFENYLSEAFDY 974
             +K TY S GVIGKL+R +K       +I+ FTREVA + YD DM V G+E+Y++EA   
Sbjct: 549  LDKVTYESKGVIGKLYREIK---KHTPHIKHFTREVARRSYDTDMIVDGYEDYITEAMAL 608

Query: 975  KRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAMRSLRKEARGWFN 1034
            K  YDFKLGNLMD+YGI++E E++SG IL+M K+F K++D + I LA+RSLRKEAR  F+
Sbjct: 609  KDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFS 668

Query: 1035 EKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSDKLIQI 1094
            E    S+ +N  G D   AKASAWYHVTYHP FWG YNEG +R HF+SFPWC+ +KL++I
Sbjct: 669  E---MSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKLLRI 722

Query: 1095 KREK 1097
            K+ +
Sbjct: 729  KQRR 722

[Close]

BLAST of CmaCh04G021320 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 758.4 bits (1957), Expect = 1.1e-217
Identity = 458/1147 (39.93%), Postives = 649/1147 (56.58%), Query Frame = 0


Query: 3    TNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVA 62
            TN  T+++    + + A E+  F+E H GE TV  + I   +D      FARV+F + + 
Sbjct: 7    TNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQF-TTLE 66

Query: 63   AEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVI------SKEEMRVI 122
             +   +   ++  L F    L+      ++ + R    R +L  ++        +E R  
Sbjct: 67   VKSRAQLLSSQSKLLFKTHNLRLSEAYDDI-IPRPVDPRKRLDDIVLTVGFPESDEKRFC 126

Query: 123  ----WRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNL-- 182
                W G    +       + W + S     D YK+E+RFE+I+     C +  +S +  
Sbjct: 127  ALEKWDGVRCWILTEKRRVEFWVWES----GDCYKIEVRFEDIIETLSCCVNGDASEIDA 186

Query: 183  FLIQLQGAPRIFKK----CPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLE 242
            FL++L+  P++FK+      +   S    + KE   F WIR  DF+ S  IG S   CLE
Sbjct: 187  FLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLE 246

Query: 243  VSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPP-QPFDIPYKILFKIN 302
            V  G  +   F  L  Y+E         G  F+S + +VP++       + PY+ILF++N
Sbjct: 247  VHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLN 306

Query: 303  ALVQHGYLPGSALDDKFFRLVDPSRFRS-DYIEYALEKLFSLKECCYEPQKWLKQQYLSF 362
            ALV    +   A  D    L+   R  S +     L+KL      CY+P  ++K Q  S 
Sbjct: 307  ALVHAQKISLFAASD--MELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSV 366

Query: 363  CSSMQ-LPWKANISL-DDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRV 422
               M+  P  A   L + +++   R  +TP+K+Y  GPE   +N VV+ F + + +F+RV
Sbjct: 367  VKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRV 426

Query: 423  SFVDEELDKIHSSDLSPRTST---EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQ 482
            +FV+E+  K+ ++ LS  +      K  RT +Y+R+LS+L  GI +G K+FEFLAFSASQ
Sbjct: 427  TFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 486

Query: 483  LRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEV 542
            LR NS WMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E 
Sbjct: 487  LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 546

Query: 543  IPDAEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPT 602
            IPD EV      YCFSDGIGKIS A A+ VA+KCGL SH PSAFQIRY GYKGV+AVD +
Sbjct: 547  IPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRS 606

Query: 603  SKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAV 662
            S +KLSLR SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   Q   +
Sbjct: 607  SFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHL 666

Query: 663  DQLDSILRDPSKALEVLELMSPGEMTSVLKDMLL-FYNPHEEPFLNMMLRTFRADKLLDL 722
              L ++L D   AL VL+ +S     ++L  MLL  Y P  EP+L+MMLR     +L +L
Sbjct: 667  SMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSEL 726

Query: 723  RTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCSVP------------GRSSESNFVVKG 782
            +++ RI VPKGR ++GC+DE   LEYGQV++  ++              +  E   VV G
Sbjct: 727  KSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIG 786

Query: 783  KVVVAKNPCLHPGDVRVLDAVDVKTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLYF 842
            KVVV KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLDGD +F
Sbjct: 787  KVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFF 846

Query: 843  VCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFAD 902
            V WD ++       PM Y  +    +DHDVTLEE+ ++F +YM++D LG I+ AH V AD
Sbjct: 847  VSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHAD 906

Query: 903  MKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVI 962
              P+KA S +C+ELA L S AVDF KTG PA +P +L+  E+PDF+E+  K TYIS  V 
Sbjct: 907  RDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVF 966

Query: 963  GKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLM 1022
            GKL+R VK   S +   +          YD  +E  GFE+++  A  ++ MY  KL +LM
Sbjct: 967  GKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLM 1026

Query: 1023 DYYGIETEPELVSGNILRMGKSFDKRND------MEQISLAMRSLRKEARGWFNEKASKS 1082
             YYG   E E+++G IL+  + +  R++       ++I+L+++ L KEA GWF +     
Sbjct: 1027 IYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC--- 1086

Query: 1083 IYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDH---FLSFPWCVSDKLIQIKRE 1103
                 + E  +   ASAWY+VTY+PN          RD    FLSFPW V D L+ IK E
Sbjct: 1087 -----EDEQQKKKLASAWYYVTYNPN---------HRDEKLTFLSFPWIVGDVLLDIKAE 1123

[Close]

BLAST of CmaCh04G021320 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 734.6 bits (1895), Expect = 1.7e-210
Identity = 422/1018 (41.45%), Postives = 605/1018 (59.43%), Query Frame = 0


Query: 114  RVIWRGEEWS---VEYGNGMRKLWFYLSYGVEDDDYKMELRFENI---LGVQLRCPHNSS 173
            RV    + W     E   G R++  YL +  +   YK+E+ FE++   LG  L       
Sbjct: 122  RVFEAADAWDGVRAEVIPGKRRVDLYLEH--DSQRYKLEVLFEDMKDCLGCTL-----DG 181

Query: 174  SNLFLIQLQGAPRIFKKCPSSSSSS----SQFYS-KESTGFRWIRDVDFTPSSCIGQSFS 233
                L+QL  APRI       + +S     +F++ KE   F W+R +DFTP+   G+  +
Sbjct: 182  MGAILLQLNYAPRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCST 241

Query: 234  LCLEVSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILF 293
            L L++     +    ++L  +    G   +++     ++SN+VP+V  P+ + +PY++LF
Sbjct: 242  LVLKLGKSALVSDILKSL-PFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLF 301

Query: 294  KINALVQHGYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYL 353
            ++N+L+  G +    ++   F+ +       D      EK+  L+  CY P ++++Q+  
Sbjct: 302  RLNSLMHMGKIVAKHVNADLFKAL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAY 361

Query: 354  SFCSS--MQLPWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFL 413
            S   S  + L  +     +  L+  +RV ITP+K++  GPE  ++N VV+       +F+
Sbjct: 362  SMKRSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFV 421

Query: 414  RVSFVDEELDKIHSSDLSPRTST---EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSA 473
            RV+FVDE+  K+ S+ +S R       K  +T +Y RILS+L+ G  IG K FEFLAFSA
Sbjct: 422  RVTFVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSA 481

Query: 474  SQLRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEI 533
            SQLR NS WMFAS   LNA  IR WMG F  IR+V+K AAR+GQ F SSR+T  V   ++
Sbjct: 482  SQLRGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDV 541

Query: 534  EVIPDAEVERKNIKYCFSDGIGKISEALAEMVAEKCGL-ISHTPSAFQIRYAGYKGVVAV 593
            EVIPD E+     KY FSDGIGKIS   A+ VA   GL  ++ PSAFQIRY GYKGV+A+
Sbjct: 542  EVIPDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAI 601

Query: 594  DPTSKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQK 653
            DP S   LSLR SM K+ S    L++ SWSK QPC++NR++I+LLSTLGIRD++FV  Q+
Sbjct: 602  DPMSSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQ 661

Query: 654  KAVDQLDSILRDPSKALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLL 713
              + + + +L +   AL VL  +   E  + +K +L  Y P  EP+L+M+L+  + ++L 
Sbjct: 662  DEMRETEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLT 721

Query: 714  DLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCSVPGR----SSESNF--------VV 773
            D+RT+ +I VPKGR ++GCLDET  LEYGQV+I  +   +    S++S F         V
Sbjct: 722  DIRTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATV 781

Query: 774  KGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYF 833
             GKV + KNPCLHPGD+RVL+A+    L  MVDC+VFPQ+G+RPHPNECSG DLDGDLYF
Sbjct: 782  VGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYF 841

Query: 834  VCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFAD 893
            + WD +L   +   PM Y       +DH VTLEE+Q++F +YM+ND LG I+ AH + AD
Sbjct: 842  ITWDDKLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHAD 901

Query: 894  MKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVI 953
              P KA S EC++LA L S+AVDF KTG PA +PR+LR  EYPDFME+  K  YISNGV+
Sbjct: 902  RSPLKARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVL 961

Query: 954  GKLFR---GVKDVSSDINNIETFTREVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLG 1013
            GKL+R   G  + S D   + + + + +   YDPD+EV G + +L  A +Y  +Y+ KL 
Sbjct: 962  GKLYRSAMGHMEKSGDSGALSSSSAQPS-PTYDPDLEVPGSDEFLQAAEEYYELYEEKLT 1021

Query: 1014 NLMDYYGIETEPELVSGNILRMGKSFDKRND------MEQISLAMRSLRKEARGWFNEKA 1073
             LM+YY  E E E+++GNI R    + KR++       ++I  A+ +L +EARGW     
Sbjct: 1022 TLMNYYRAELEDEILTGNI-RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL---- 1081

Query: 1074 SKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLSFPWCVSDKLIQIK 1094
                  +++ E++    ASAWY VTYHP       +  +   F SFPW   D L+ IK
Sbjct: 1082 -----LSSRKEEDASRMASAWYRVTYHP-------DRRRGKRFWSFPWIACDNLLAIK 1111

[Close]

BLAST of CmaCh04G021320 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.0e-163
Identity = 391/1070 (36.54%), Postives = 575/1070 (53.74%), Query Frame = 0


Query: 96   RMEKVRVQLGSVISKEEMRVIWRGE--EWSVEYGNGMRKLWFYLS----------YGVED 155
            ++  + +++G+++S+++  V WR E  ++ V+  +   K  F  S          + V +
Sbjct: 131  KLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN 190

Query: 156  DDYKMELRFENILGV-QLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSQFYSKESTG 215
             DYK+EL   +I  V Q +  H     + ++QL  +PR++ +        +         
Sbjct: 191  CDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLDDD 250

Query: 216  FRWIRDVDFTPSSCIGQSFSLCLEVSPGDQ------LPSFFQTLVGYKEIYGPFKLSTGS 275
              WIR  DFT    IG+  S  + +SP  +      L  F    V  + +  P ++    
Sbjct: 251  DPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEP 310

Query: 276  AFSS-TSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDY 335
             F    S+    +   +   I ++I+F +N+++  G      L ++FF L+       D 
Sbjct: 311  CFGEPVSDHFFCIHHKE--GISFEIMFLVNSVLHRGVFNQFQLTERFFDLL--RNQPKDV 370

Query: 336  IEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKV 395
               +L+ L + K   ++  K LK        + +L      S D S   + R+ ITP + 
Sbjct: 371  NIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS--EIRRLVITPTRA 430

Query: 396  YFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLS--------PRTSTEKIE 455
            Y   PE  LSNRV+RR+    + FLRV+F+DE +  I+S+ LS          TS+   +
Sbjct: 431  YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 490

Query: 456  RTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFR 515
            +T V+ R+ S+L +G  + G+K+ FLAFSA+QLR+ S W FA       +DI+ WMG F+
Sbjct: 491  KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 550

Query: 516  EIRNVAKYAARLGQSFGSSRKTLCVEENEIEV-IPDAEVERKNIKYCFSDGIGKISEALA 575
            + +NVAK AAR+G  F S+  T+ V  +E++  +PD  +ER    Y FSDGIG I+  LA
Sbjct: 551  D-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPD--IERNG--YVFSDGIGTITPDLA 610

Query: 576  EMVAEKCGL-ISHTPSAFQIRYAGYKGVVAVDPTSKK--KLSLRKSMLKYMSLDTQLDVL 635
            + V EK  L + ++P A+QIRYAG+KGVVA  P+     +L+LR SM K+ S  T L++ 
Sbjct: 611  DEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEIC 670

Query: 636  SWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGE 695
            SW+++QP FLNRQ+I LLS LG+ D++F   Q+  + +L+ IL D   A EVL      +
Sbjct: 671  SWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQ 730

Query: 696  MTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLE 755
              +    +   + P  EP L  ML + R  +L  LR KSRIFV  GR +MGCLDE   LE
Sbjct: 731  GNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILE 790

Query: 756  YGQVFIHCSVP----------GRSSESNF---VVKGKVVVAKNPCLHPGDVRVLDAVDVK 815
            +GQ FI  S P           R  E+     VVKG V +AKNPCLHPGDVR+L+AVDV 
Sbjct: 791  HGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVP 850

Query: 816  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIK----PMSYEPAP 875
             LHHM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L  I P +     M Y+ A 
Sbjct: 851  QLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL--IPPNRKSYPAMHYDAAE 910

Query: 876  TIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAV 935
               L   V  +++ ++FA  + N+ LG I NAH V AD     AM  EC+ LA+L + AV
Sbjct: 911  EKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAV 970

Query: 936  DFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDV-SSDINNIETFT 995
            DFPKTG   ++P  L+   YPDFM K + +TY SN ++G+L+R VK+V   D       +
Sbjct: 971  DFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEES 1030

Query: 996  REVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGK 1055
             + +   YD  +E+ GFE+ + EA+ +K +YD +L  L+  Y ++ E E+V+G+I  M K
Sbjct: 1031 TDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPK 1090

Query: 1056 SFDKRND--MEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNE----YAKASAWYHV 1105
               K+     E++  +  SL+KE R  F E       + N  E+ +      KASAWYHV
Sbjct: 1091 YTSKKQGELKERLKHSYNSLKKEFRKVFEETIPD---HENLSEEEKNILYEKKASAWYHV 1150

[Close]

BLAST of CmaCh04G021320 vs. ExPASy TrEMBL
Match: A0A6J1JTB1 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111487656 PE=3 SV=1)

HSP 1 Score: 2265.7 bits (5870), Expect = 0.0e+00
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK
Sbjct: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE 120
            VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE
Sbjct: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE 120

Query: 121  EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR 180
            EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR
Sbjct: 121  EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR 180

Query: 181  IFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTL 240
            IFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTL
Sbjct: 181  IFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTL 240

Query: 241  VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDD 300
            VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDD
Sbjct: 241  VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDD 300

Query: 301  KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDD 360
            KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDD
Sbjct: 301  KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDD 360

Query: 361  SLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPR 420
            SLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPR
Sbjct: 361  SLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPR 420

Query: 421  TSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIR 480
            TSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIR
Sbjct: 421  TSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIR 480

Query: 481  EWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGK 540
            EWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGK
Sbjct: 481  EWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGK 540

Query: 541  ISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQL 600
            ISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQL
Sbjct: 541  ISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQL 600

Query: 601  DVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMS 660
            DVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMS
Sbjct: 601  DVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMS 660

Query: 661  PGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETR 720
            PGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETR
Sbjct: 661  PGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETR 720

Query: 721  TLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVV 780
            TLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVV
Sbjct: 721  TLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVV 780

Query: 781  FPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQ 840
            FPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQ
Sbjct: 781  FPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQ 840

Query: 841  EYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRS 900
            EYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRS
Sbjct: 841  EYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRS 900

Query: 901  LRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVM 960
            LRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVM
Sbjct: 901  LRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVM 960

Query: 961  GFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAM 1020
            GFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAM
Sbjct: 961  GFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAM 1020

Query: 1021 RSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLS 1080
            RSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLS
Sbjct: 1021 RSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLS 1080

Query: 1081 FPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            FPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 FPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1115

[Close]

BLAST of CmaCh04G021320 vs. ExPASy TrEMBL
Match: A0A6J1EB47 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111430971 PE=3 SV=1)

HSP 1 Score: 2191.4 bits (5677), Expect = 0.0e+00
Identity = 1084/1123 (96.53%), Postives = 1096/1123 (97.60%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGT GKTIEVFGF REVSAGEVKEFMENHTGEGTVSKVRISKPK  K RLT ARVEFRSK
Sbjct: 1    MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREM-------RVERMEKVRVQLGSVISKEEM 120
            VAAEYVVEKAEAEE LWFGRWYLKAR VERE        R+ER+EKVRVQLGSVI K+EM
Sbjct: 61   VAAEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEM 120

Query: 121  RVIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI 180
            RVIWRGE+WSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI
Sbjct: 121  RVIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI 180

Query: 181  QLQGAPRIFKKCP-SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQ 240
            QLQGAPRIFKKCP SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSF+LC EVSPGDQ
Sbjct: 181  QLQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQ 240

Query: 241  LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGY 300
            LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPF IPYKILFKINALVQHGY
Sbjct: 241  LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGY 300

Query: 301  LPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 360
            LPGSALDDKFFRLVDP+RFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW
Sbjct: 301  LPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 360

Query: 361  KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 420
            KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI
Sbjct: 361  KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 420

Query: 421  HSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 480
            +SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE
Sbjct: 421  YSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 480

Query: 481  GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKY 540
            GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD EVERKNIKY
Sbjct: 481  GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 540

Query: 541  CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 600
            CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK
Sbjct: 541  CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 600

Query: 601  YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKA 660
            YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI+DDVFVKQQKKAVDQLDSILRDPSKA
Sbjct: 601  YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 660

Query: 661  LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 720
            LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVP+GRTM
Sbjct: 661  LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 720

Query: 721  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 780
            MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL
Sbjct: 721  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 780

Query: 781  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 840
            HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH
Sbjct: 781  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 840

Query: 841  DVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTG 900
            DVT+EEVQEYFANYMVNDGLGGIANAHTVFAD KPKKAMSAECIELAKLFSIAVDFPKTG
Sbjct: 841  DVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTG 900

Query: 901  VPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKC 960
            VPANLPRSLRVHEYPDFMEKPNKRTY SNGVIGKLFRGVKDVSSDINNIETFTREVA KC
Sbjct: 901  VPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKC 960

Query: 961  YDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1020
            YDPDMEVMGFENYLSEAFDYK MYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND
Sbjct: 961  YDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1020

Query: 1021 MEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEG 1080
            MEQISLAMRSLRKEARGWFNEK SKSIYNNNK ED+EYAKASAWYHVTYHPNFWGRYNEG
Sbjct: 1021 MEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEG 1080

Query: 1081 MQRDHFLSFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            MQRDHFLSFPWCVS+KLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 MQRDHFLSFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY 1123

[Close]

BLAST of CmaCh04G021320 vs. ExPASy TrEMBL
Match: A0A6J1FF44 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 SV=1)

HSP 1 Score: 1828.9 bits (4736), Expect = 0.0e+00
Identity = 900/1100 (81.82%), Postives = 980/1100 (89.09%), Query Frame = 0


Query: 5    GKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAE 64
            GKTIE++GF  +V+A EVKEF+ENHTG+GTV  VRISK  D K R TFA V+F SK+  E
Sbjct: 8    GKTIEIYGFPTQVTADEVKEFIENHTGDGTVLTVRISKLNDEKARFTFATVQFTSKLGGE 67

Query: 65   YVVEKAEAEEGLWFGRWYLKARGVEREMR--------VERMEKVRVQLGSVISKEEMRVI 124
            YVV +A AE+ LWFG  YLKAR VERE++        +ERME V VQ GS++SKEEM+VI
Sbjct: 68   YVVAQAAAEKRLWFGSSYLKARKVEREIKTAARVHGELERMENVNVQWGSLVSKEEMKVI 127

Query: 125  WRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQ 184
            W+G +WSVEYG G+RKL FYLSY  E  +YKMEL FENILGVQLRC  +  S LFLIQLQ
Sbjct: 128  WKGGKWSVEYGIGVRKLGFYLSY--EGVEYKMELCFENILGVQLRCSVDRGSKLFLIQLQ 187

Query: 185  GAPRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSF 244
            GAPRIFKK P   SSSS+  S+ESTGFRWIRDVDFTPSSCIGQSF+LCLE+S GDQLPSF
Sbjct: 188  GAPRIFKKAP--LSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSF 247

Query: 245  FQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGS 304
            FQTLVGYKE Y PF L TGS+ SS SNLVPI+TPPQ FDIPYKILFKINAL+QHGYLPG 
Sbjct: 248  FQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALLQHGYLPGP 307

Query: 305  ALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANI 364
            ALD++FFRLVD SRFR DY+EYAL+KLF  KECCYEPQKWLKQQYLSF SS QLPWK NI
Sbjct: 308  ALDNEFFRLVDSSRFRPDYVEYALDKLFHFKECCYEPQKWLKQQYLSFYSSKQLPWKPNI 367

Query: 365  SLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSD 424
            SLDD LVYVHRVQITP KVYFRGPEANLSNRVVR FIDD+DNFLRVSFVDEELDK+HS D
Sbjct: 368  SLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSID 427

Query: 425  LSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNA 484
            LSPRTS E   RTRVYDR+LSVLRNGIVIG KKFEFLAFSASQLRENS WMFASR+GL+A
Sbjct: 428  LSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLSA 487

Query: 485  ADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSD 544
            ADIREWMGD R+IRNVAKYAARLGQSFGSSR+TLCVE++EIEVI D EVE   I YCFSD
Sbjct: 488  ADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFSD 547

Query: 545  GIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSL 604
            GIGKIS  LAE VAEKCGLISHTPSAFQIRYAGYKGVVA+DPTS KKLSLRKSMLKY SL
Sbjct: 548  GIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTSL 607

Query: 605  DTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVL 664
            DTQ+DVLSWSKYQPCFLNRQVINLLSTLGI+D VFVK+QK+A+DQLDSIL DPS+ALEVL
Sbjct: 608  DTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEVL 667

Query: 665  ELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 724
            ELMSPGEMTS+LK++LL Y P+EEPFLNMMLRTFRA KLLDLRTKSRIFVPKGRTMMGCL
Sbjct: 668  ELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGCL 727

Query: 725  DETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMV 784
            DETRTLEYGQVF+HCS+PGRSSESNFVVKGKVVVAKNPCLHPGDVR+LDAVDVK LHHMV
Sbjct: 728  DETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHMV 787

Query: 785  DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTL 844
            DCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELT I+P+KPMSYEPAPT+QLDHDVT+
Sbjct: 788  DCVVFPQKGKRPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMQLDHDVTI 847

Query: 845  EEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPAN 904
            EEVQ Y   YMVNDGLGGIANAHTVFAD KPKKAM+AECI+LAKLFSIAVDFPKTGVPAN
Sbjct: 848  EEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMAAECIKLAKLFSIAVDFPKTGVPAN 907

Query: 905  LPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPD 964
             P +LRV EYPDFMEKP+K TY+SNGV+GKLFRGVKDVSSD+N +E F+REVA KCYDPD
Sbjct: 908  FPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDPD 967

Query: 965  MEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQI 1024
            MEV GFE+YLSEAF++K  YDFKLGNLMDYYGI+TEPEL+SGNILRM KSFDKRNDMEQI
Sbjct: 968  MEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQI 1027

Query: 1025 SLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRD 1084
            SLAM+SLRKEAR WFNEK SKS Y+ +  ++ EYAKASAWY VTYHP++WGRYNEGMQRD
Sbjct: 1028 SLAMKSLRKEARSWFNEKGSKSAYDEDDNKNEEYAKASAWYRVTYHPDYWGRYNEGMQRD 1087

Query: 1085 HFLSFPWCVSDKLIQIKREK 1097
            HFLSFPWCVSDKLIQIKREK
Sbjct: 1088 HFLSFPWCVSDKLIQIKREK 1103

[Close]

BLAST of CmaCh04G021320 vs. ExPASy TrEMBL
Match: A0A6J1K1Q3 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489826 PE=3 SV=1)

HSP 1 Score: 1815.4 bits (4701), Expect = 0.0e+00
Identity = 899/1105 (81.36%), Postives = 979/1105 (88.60%), Query Frame = 0


Query: 5    GKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAE 64
            GK IE++GF  EV+A EVKEF+ENHTG+GTV  VRISKP D K R TFA V F SK+  E
Sbjct: 8    GKMIEIYGFPAEVTADEVKEFIENHTGDGTVLTVRISKPNDEKARFTFATVRFTSKLGGE 67

Query: 65   YVVEKAEAEEGLWFGRWYLKARGVEREMR-------------VERMEKVRVQLGSVISKE 124
            YVV +A AE+ LWFG  YLKAR VERE+R             +ERME V VQ GS++SKE
Sbjct: 68   YVVAQAAAEKRLWFGSSYLKARKVEREIRTATAAAAARVHGGLERMENVNVQWGSLVSKE 127

Query: 125  EMRVIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLF 184
            +M+VIW+  +WSVEYG G RKL FYLSY  E  +YKMEL FENILGVQLRC  +  S LF
Sbjct: 128  KMKVIWKEGKWSVEYGIGARKLGFYLSY--EGVEYKMELCFENILGVQLRCSGDRGSELF 187

Query: 185  LIQLQGAPRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGD 244
            LIQLQGAPRIFKK P  SSSSS+  S+ESTGFRWIRDVDFTPSSCIGQSF+LCLE+SPGD
Sbjct: 188  LIQLQGAPRIFKKTP--SSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSPGD 247

Query: 245  QLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHG 304
            QLPSFF+TLVGYKE Y PF L  GS+ SS SNLVPI+TPPQ FDI YKILFKINAL+QHG
Sbjct: 248  QLPSFFRTLVGYKESYAPFILHPGSSLSSISNLVPIITPPQGFDISYKILFKINALLQHG 307

Query: 305  YLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLP 364
            YLPG ALD++FFRLVD SRFR +YIEYALEKLF  KECCYEPQKWLKQQYLSF SS QLP
Sbjct: 308  YLPGPALDNEFFRLVDSSRFRPEYIEYALEKLFHFKECCYEPQKWLKQQYLSFYSSKQLP 367

Query: 365  WKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK 424
             K N+SLDD LVYVHRVQITP KVYFRGPEANLSNRVVR FIDD+DNFLRVSFVDEELDK
Sbjct: 368  CKPNVSLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDK 427

Query: 425  IHSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASR 484
            +HS DLSPRTS E   RTRVYDR+LSVLRNGIVIG KKFEFLAFSASQLRENS WMFASR
Sbjct: 428  LHSIDLSPRTSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASR 487

Query: 485  EGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIK 544
            +GL+AADIREWMGDFR+IRNVAKYAARLGQSFGSSR+TLCVE++EIEVIPD EVE   I 
Sbjct: 488  KGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVIPDVEVETNKIT 547

Query: 545  YCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSML 604
            YCFSDGIGKIS  LAE VAEKCGLISHTPSAFQIRYAGYKGVVA+DPTS KKLSLRKSML
Sbjct: 548  YCFSDGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSML 607

Query: 605  KYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSK 664
            KY SLDTQ+DVLSWSKYQPCFLNRQVINLLSTLGI+D VFVK+QK+A+DQLDSIL DPS+
Sbjct: 608  KYTSLDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSR 667

Query: 665  ALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRT 724
            ALEVLELMSPGEMTS+LK++LL Y P+EEPFLNMMLRTFRA KLLDLRTKSRIFVPKGRT
Sbjct: 668  ALEVLELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRT 727

Query: 725  MMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT 784
            MMGCLDETRTLEYGQVF+HCS+PGRSSESNFVVKGKVVVAKNPCLHPGDVR+LDAVDVK 
Sbjct: 728  MMGCLDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKA 787

Query: 785  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD 844
            LHHMV+CVVFPQKG+RPHPNECSGSDLDGDLYFV WDPELT I+P+KPMSYEPAPT++LD
Sbjct: 788  LHHMVNCVVFPQKGERPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMRLD 847

Query: 845  HDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKT 904
            HDVT+EEVQEY A YMVNDGLGGIANAHTVFAD KPKKAM+AECI+LAKLFSIAVDFPKT
Sbjct: 848  HDVTIEEVQEYLAKYMVNDGLGGIANAHTVFADKKPKKAMTAECIKLAKLFSIAVDFPKT 907

Query: 905  GVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVK 964
            GVPAN P +LRV EYPDFMEKP+K TY+SNGV+GKLFRGVKDVSSD+N IE F+REVA K
Sbjct: 908  GVPANFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTIEIFSREVATK 967

Query: 965  CYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRN 1024
            CYDPDMEV GFE+YLSEAF+YK  YDFKLGNLMDYYGI+TEPEL+SGNILRM KSFDKRN
Sbjct: 968  CYDPDMEVDGFEDYLSEAFEYKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRN 1027

Query: 1025 DMEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNE 1084
            D+EQISLA++SLRKEAR WFNEK SKS  + +  +D EYAKASAWY VTYHP++WGRYNE
Sbjct: 1028 DLEQISLAIKSLRKEARSWFNEKGSKSACDED-DKDEEYAKASAWYRVTYHPDYWGRYNE 1087

Query: 1085 GMQRDHFLSFPWCVSDKLIQIKREK 1097
            GMQRDHFLSFPWCVSDKLIQIKREK
Sbjct: 1088 GMQRDHFLSFPWCVSDKLIQIKREK 1107

[Close]

BLAST of CmaCh04G021320 vs. ExPASy TrEMBL
Match: A0A0S1YCZ4 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1)

HSP 1 Score: 1805.0 bits (4674), Expect = 0.0e+00
Identity = 889/1117 (79.59%), Postives = 981/1117 (87.82%), Query Frame = 0


Query: 5    GKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAE 64
            GKTIE++GFR +V+A EVKEF+ENHTG+GTVS VRISKPKD K R T   V F+SK+AAE
Sbjct: 2    GKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAAE 61

Query: 65   YVVEKAEAEE-GLWFGRWYLKARGVERE---------MRVERMEKVRVQLGSVISKEEMR 124
            Y+V K+  EE  LWF   YLKAR +E+          + +ERME V+  LGS+IS  +MR
Sbjct: 62   YIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKMR 121

Query: 125  VIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQ 184
            VIW GE+WSVE+GNG RKLWFYLSY  E D+YKMEL FENIL V+ RCP N  S  FLIQ
Sbjct: 122  VIWEGEKWSVEFGNGFRKLWFYLSY--EVDEYKMELCFENILSVEFRCPLNEPSKFFLIQ 181

Query: 185  LQGAPRIFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLP 244
            LQGAPRIF+K P  SSSSS  YS +ST FRWIRDVDFTPSSCIGQSF++CL++SP   LP
Sbjct: 182  LQGAPRIFRKTP--SSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLP 241

Query: 245  SFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLP 304
             FFQTLVGYK  Y PF L  GS+  S SNLVPI+TPPQ FDI YKILFKINAL+QHGYL 
Sbjct: 242  PFFQTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLS 301

Query: 305  GSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKA 364
            G  LDD+FFRLVD SRF SDYIE+ALEKLF+LKECCY+PQKWLK QYLS+ +S QLPWK+
Sbjct: 302  GPTLDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKS 361

Query: 365  NISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHS 424
            NISLDD LVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNFLRVSFVDEELDK+HS
Sbjct: 362  NISLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHS 421

Query: 425  SDLSPRTST-EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 484
             DL+PR+S+ E  +RTRVYDR++S+L+NGIVIG KKFEFLAFSASQLRENSFWMFASREG
Sbjct: 422  IDLAPRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREG 481

Query: 485  LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYC 544
            L+AADIREWMGDF  IRNVAKYAARLGQSFGSSRKTLCVEE+EIEVIPD EVERKNI YC
Sbjct: 482  LSAADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYC 541

Query: 545  FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 604
            FSDGIGKIS+ LA+ VAEKCGL SHTPSAFQIRYAGYKGVVA+DPTS+KKLSLRKSMLKY
Sbjct: 542  FSDGIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKY 601

Query: 605  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKAL 664
            MSLDTQLDVL WSKYQPCFLNRQVINLLSTLGIRDDVFVK+QK+A+DQLDSIL DPS+AL
Sbjct: 602  MSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRAL 661

Query: 665  EVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMM 724
            EVLELMSPGEMTS+LK++L FY P++EPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMM
Sbjct: 662  EVLELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMM 721

Query: 725  GCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLH 784
            GCLDET+TLEYGQVF+HCS+PGRSSE NFVVKGKVVVAKNPCLHPGDVR+LDA+DVK LH
Sbjct: 722  GCLDETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALH 781

Query: 785  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHD 844
            HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCI+ +KPMSY+PAPTIQLDHD
Sbjct: 782  HMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHD 841

Query: 845  VTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGV 904
            VT+EEVQEYFANYMVNDGLG IANAHTVFAD   KKAMSAECI+LAKLFSIAVDFPKTGV
Sbjct: 842  VTIEEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGV 901

Query: 905  PANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCY 964
            PANLPR+LRVHEYPDFM+KPNK TY+SNGV+GKLFRGVKDVSSD++  E FTREVA KCY
Sbjct: 902  PANLPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCY 961

Query: 965  DPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDM 1024
            DPDMEV GFE YL EAFDYK  YDFKLGNLMDYYGI+TEPELVSGNIL+M KSFDKR D+
Sbjct: 962  DPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDL 1021

Query: 1025 EQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGM 1084
            EQI+ AM+SLRKE R WFNE  SKS Y++ +   +EYA+ASAWY VTYHP++WG YNEG 
Sbjct: 1022 EQIAFAMKSLRKEVRFWFNENESKSTYDDIQ---DEYARASAWYCVTYHPDYWGCYNEGT 1081

Query: 1085 QRDHFLSFPWCVSDKLIQIKREKM---ESSPVSSLIH 1108
            +RDHFLSFPWCV+DKLIQIKREKM    SSP SSL+H
Sbjct: 1082 KRDHFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111

[Close]

BLAST of CmaCh04G021320 vs. NCBI nr
Match: XP_022990904.1 (probable RNA-dependent RNA polymerase 1 [Cucurbita maxima])

HSP 1 Score: 2265.7 bits (5870), Expect = 0.0e+00
Identity = 1115/1115 (100.00%), Postives = 1115/1115 (100.00%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK
Sbjct: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE 120
            VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE
Sbjct: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE 120

Query: 121  EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR 180
            EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR
Sbjct: 121  EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR 180

Query: 181  IFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTL 240
            IFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTL
Sbjct: 181  IFKKCPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQTL 240

Query: 241  VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDD 300
            VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDD
Sbjct: 241  VGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDD 300

Query: 301  KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDD 360
            KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDD
Sbjct: 301  KFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDD 360

Query: 361  SLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPR 420
            SLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPR
Sbjct: 361  SLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPR 420

Query: 421  TSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIR 480
            TSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIR
Sbjct: 421  TSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIR 480

Query: 481  EWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGK 540
            EWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGK
Sbjct: 481  EWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIGK 540

Query: 541  ISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQL 600
            ISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQL
Sbjct: 541  ISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQL 600

Query: 601  DVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMS 660
            DVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMS
Sbjct: 601  DVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMS 660

Query: 661  PGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETR 720
            PGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETR
Sbjct: 661  PGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETR 720

Query: 721  TLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVV 780
            TLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVV
Sbjct: 721  TLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCVV 780

Query: 781  FPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQ 840
            FPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQ
Sbjct: 781  FPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQ 840

Query: 841  EYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRS 900
            EYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRS
Sbjct: 841  EYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRS 900

Query: 901  LRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVM 960
            LRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVM
Sbjct: 901  LRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVM 960

Query: 961  GFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAM 1020
            GFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAM
Sbjct: 961  GFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLAM 1020

Query: 1021 RSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLS 1080
            RSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLS
Sbjct: 1021 RSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFLS 1080

Query: 1081 FPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            FPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 FPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1115

[Close]

BLAST of CmaCh04G021320 vs. NCBI nr
Match: KAG7032582.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 2206.0 bits (5715), Expect = 0.0e+00
Identity = 1089/1125 (96.80%), Postives = 1101/1125 (97.87%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGT GKTIEVFGF REVSAGEVKEFMENHTGEGTVSKVRISKPKD K RLTFARVEFRSK
Sbjct: 1    MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKDKKSRLTFARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREM---------RVERMEKVRVQLGSVISKE 120
            VAAEYVVEKAEAEE LWFGRWYLKARGVERE          R+ER+EKVRVQLGSVISK+
Sbjct: 61   VAAEYVVEKAEAEERLWFGRWYLKARGVEREREREREMRVERLERLEKVRVQLGSVISKD 120

Query: 121  EMRVIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLF 180
            EMRVIWRGE+WSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLF
Sbjct: 121  EMRVIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLF 180

Query: 181  LIQLQGAPRIFKKCP-SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPG 240
            LIQLQGAPRIFKKCP SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSF+LC EVSPG
Sbjct: 181  LIQLQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPG 240

Query: 241  DQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQH 300
            DQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPF IPYKILFKINALVQH
Sbjct: 241  DQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQH 300

Query: 301  GYLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQL 360
            GYLPGSALDDKFFRLVDP+RFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQL
Sbjct: 301  GYLPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQL 360

Query: 361  PWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELD 420
            PWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELD
Sbjct: 361  PWKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELD 420

Query: 421  KIHSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAS 480
            KIHSSDLSPRTSTEKIERTRVYDRILSVLRNGI+IGGKKFEFLAFSASQLRENSFWMFAS
Sbjct: 421  KIHSSDLSPRTSTEKIERTRVYDRILSVLRNGILIGGKKFEFLAFSASQLRENSFWMFAS 480

Query: 481  REGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNI 540
            REGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD EVERKNI
Sbjct: 481  REGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNI 540

Query: 541  KYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSM 600
            KYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSM
Sbjct: 541  KYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSM 600

Query: 601  LKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPS 660
            LKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI+DDVFVKQQKKAVDQLDSILRDPS
Sbjct: 601  LKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPS 660

Query: 661  KALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGR 720
            KALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVP+GR
Sbjct: 661  KALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGR 720

Query: 721  TMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVK 780
            TMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVK
Sbjct: 721  TMMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVK 780

Query: 781  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQL 840
            TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQL
Sbjct: 781  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQL 840

Query: 841  DHDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPK 900
            DHDVT+EEVQEYFANYMVNDGLGGIANAHTVFAD KPKKAMSAECIELAKLFSIAVDFPK
Sbjct: 841  DHDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPK 900

Query: 901  TGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAV 960
            TGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVA 
Sbjct: 901  TGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAA 960

Query: 961  KCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKR 1020
            KCYDPDMEVMGFENYLSEAFDYK MYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKR
Sbjct: 961  KCYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKR 1020

Query: 1021 NDMEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYN 1080
            NDMEQISLAMRSLRKEARGWFNEK SKSIYNNNK ED+EYAKASAWYHVTYHPNFWGRYN
Sbjct: 1021 NDMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYN 1080

Query: 1081 EGMQRDHFLSFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            EGMQRDHFLSFPWCVS+KLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 EGMQRDHFLSFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY 1125

[Close]

BLAST of CmaCh04G021320 vs. NCBI nr
Match: KAG6601883.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 2202.9 bits (5707), Expect = 0.0e+00
Identity = 1087/1116 (97.40%), Postives = 1098/1116 (98.39%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGT GKTIEVFGF REVSAGEVKEFMENHTGEGTVSKVRISK KD K R  FARVEFRSK
Sbjct: 1    MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKRKDKKSR--FARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVISKEEMRVIWRGE 120
            VAAEYVVEKAEAEE LWFGRWYLKARGVEREMRVER+EKVRVQLGSVISK+EMRVIWRGE
Sbjct: 61   VAAEYVVEKAEAEERLWFGRWYLKARGVEREMRVERLEKVRVQLGSVISKDEMRVIWRGE 120

Query: 121  EWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR 180
            +WSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR
Sbjct: 121  DWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGAPR 180

Query: 181  IFKKCP-SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPSFFQT 240
            IFKKCP SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSF+LC EVSPGDQLPSFFQT
Sbjct: 181  IFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQLPSFFQT 240

Query: 241  LVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALD 300
            LVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPF IPYKILFKINALVQHGYLPGSALD
Sbjct: 241  LVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGYLPGSALD 300

Query: 301  DKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLD 360
            DKFFRLVDP+RFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLD
Sbjct: 301  DKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLD 360

Query: 361  DSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSP 420
            DSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSP
Sbjct: 361  DSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSP 420

Query: 421  RTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADI 480
            RTSTEKIERTRVYDRILSVLRNGI+IGGKKFEFLAFSASQLRENSFWMFASREGLNAADI
Sbjct: 421  RTSTEKIERTRVYDRILSVLRNGILIGGKKFEFLAFSASQLRENSFWMFASREGLNAADI 480

Query: 481  REWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYCFSDGIG 540
            REWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD EVERKNIKYCFSDGIG
Sbjct: 481  REWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKYCFSDGIG 540

Query: 541  KISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQ 600
            KISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQ
Sbjct: 541  KISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKYMSLDTQ 600

Query: 601  LDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELM 660
            LDVLSWSKYQPCFLNRQVINLLSTLGI+DDVFVKQQKKAVDQLDSILRDPSKALEVLELM
Sbjct: 601  LDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKALEVLELM 660

Query: 661  SPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDET 720
            SPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVP+GRTMMGCLDET
Sbjct: 661  SPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTMMGCLDET 720

Query: 721  RTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCV 780
            RTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCV
Sbjct: 721  RTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVDCV 780

Query: 781  VFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEV 840
            VFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVT+EEV
Sbjct: 781  VFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDHDVTIEEV 840

Query: 841  QEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPR 900
            QEYFANYMVNDGLGGIANAHTVFAD KPKKAMSAECIELAKLFSIAVDFPKTGVPANLPR
Sbjct: 841  QEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPR 900

Query: 901  SLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEV 960
            SLRVHEYPDFMEKPNKRTY SNGVIGKLFRGVKDVSSDINNIETFTREVA KCYDPDMEV
Sbjct: 901  SLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKCYDPDMEV 960

Query: 961  MGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLA 1020
            MGFENYLSEAFDYK MYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLA
Sbjct: 961  MGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRNDMEQISLA 1020

Query: 1021 MRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDHFL 1080
            MRSLRKEARGWFNEK SKSIYNNNK ED+EYAKASAWYHVTYHPNFWGRYNEGMQRDHFL
Sbjct: 1021 MRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEGMQRDHFL 1080

Query: 1081 SFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            SFPWCVS+KLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 SFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY 1114

[Close]

BLAST of CmaCh04G021320 vs. NCBI nr
Match: XP_022923210.1 (probable RNA-dependent RNA polymerase 1 [Cucurbita moschata])

HSP 1 Score: 2191.4 bits (5677), Expect = 0.0e+00
Identity = 1084/1123 (96.53%), Postives = 1096/1123 (97.60%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGT GKTIEVFGF REVSAGEVKEFMENHTGEGTVSKVRISKPK  K RLT ARVEFRSK
Sbjct: 1    MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISKPKYEKSRLTSARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGVEREM-------RVERMEKVRVQLGSVISKEEM 120
            VAAEYVVEKAEAEE LWFGRWYLKAR VERE        R+ER+EKVRVQLGSVI K+EM
Sbjct: 61   VAAEYVVEKAEAEERLWFGRWYLKARRVEREREREMRVERLERLEKVRVQLGSVIWKDEM 120

Query: 121  RVIWRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI 180
            RVIWRGE+WSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI
Sbjct: 121  RVIWRGEDWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLI 180

Query: 181  QLQGAPRIFKKCP-SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQ 240
            QLQGAPRIFKKCP SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSF+LC EVSPGDQ
Sbjct: 181  QLQGAPRIFKKCPSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGDQ 240

Query: 241  LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHGY 300
            LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPF IPYKILFKINALVQHGY
Sbjct: 241  LPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFHIPYKILFKINALVQHGY 300

Query: 301  LPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 360
            LPGSALDDKFFRLVDP+RFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW
Sbjct: 301  LPGSALDDKFFRLVDPTRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPW 360

Query: 361  KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 420
            KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI
Sbjct: 361  KANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKI 420

Query: 421  HSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 480
            +SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE
Sbjct: 421  YSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASRE 480

Query: 481  GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKY 540
            GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD EVERKNIKY
Sbjct: 481  GLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIKY 540

Query: 541  CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 600
            CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK
Sbjct: 541  CFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLK 600

Query: 601  YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKA 660
            YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGI+DDVFVKQQKKAVDQLDSILRDPSKA
Sbjct: 601  YMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIQDDVFVKQQKKAVDQLDSILRDPSKA 660

Query: 661  LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 720
            LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVP+GRTM
Sbjct: 661  LEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPEGRTM 720

Query: 721  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 780
            MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL
Sbjct: 721  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 780

Query: 781  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 840
            HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH
Sbjct: 781  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 840

Query: 841  DVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTG 900
            DVT+EEVQEYFANYMVNDGLGGIANAHTVFAD KPKKAMSAECIELAKLFSIAVDFPKTG
Sbjct: 841  DVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKTG 900

Query: 901  VPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKC 960
            VPANLPRSLRVHEYPDFMEKPNKRTY SNGVIGKLFRGVKDVSSDINNIETFTREVA KC
Sbjct: 901  VPANLPRSLRVHEYPDFMEKPNKRTYTSNGVIGKLFRGVKDVSSDINNIETFTREVAAKC 960

Query: 961  YDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1020
            YDPDMEVMGFENYLSEAFDYK MYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND
Sbjct: 961  YDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1020

Query: 1021 MEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEG 1080
            MEQISLAMRSLRKEARGWFNEK SKSIYNNNK ED+EYAKASAWYHVTYHPNFWGRYNEG
Sbjct: 1021 MEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNEG 1080

Query: 1081 MQRDHFLSFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            MQRDHFLSFPWCVS+KLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 MQRDHFLSFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY 1123

[Close]

BLAST of CmaCh04G021320 vs. NCBI nr
Match: XP_023524048.1 (probable RNA-dependent RNA polymerase 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2186.8 bits (5665), Expect = 0.0e+00
Identity = 1082/1124 (96.26%), Postives = 1094/1124 (97.33%), Query Frame = 0


Query: 1    MGTNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSK 60
            MGT GKTIEVFGF REVSAGEVKEFMENHTGEGTVSKVRIS+PKD K RLT+ARVEFRSK
Sbjct: 1    MGTKGKTIEVFGFGREVSAGEVKEFMENHTGEGTVSKVRISEPKDEKARLTYARVEFRSK 60

Query: 61   VAAEYVVEKAEAEEGLWFGRWYLKARGV----EREMRVERMEKVRVQLGSVISKEEMRVI 120
            VAAEYVVEKAEAEE LWFGRWYLKARGV    EREMRVERMEKVRVQLGSV+ KEEMRVI
Sbjct: 61   VAAEYVVEKAEAEERLWFGRWYLKARGVERGREREMRVERMEKVRVQLGSVVWKEEMRVI 120

Query: 121  WRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQ 180
            WRGE WSVEYGNGMRKLWFYLSYGV   DYKMELRFENILGVQLRCPHNSSSNLFLIQLQ
Sbjct: 121  WRGENWSVEYGNGMRKLWFYLSYGV--IDYKMELRFENILGVQLRCPHNSSSNLFLIQLQ 180

Query: 181  GAPRIFKKCP-----SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGD 240
            GAPRIFKKCP     SSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSF+LC EVSPGD
Sbjct: 181  GAPRIFKKCPSSSSSSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFALCFEVSPGD 240

Query: 241  QLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPPQPFDIPYKILFKINALVQHG 300
            QLPSFFQTLVGYKEIYGPFKLSTGSAFSS SNLVPIVTPPQPFDIPYKILFKINALVQHG
Sbjct: 241  QLPSFFQTLVGYKEIYGPFKLSTGSAFSSNSNLVPIVTPPQPFDIPYKILFKINALVQHG 300

Query: 301  YLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLP 360
            YLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLP
Sbjct: 301  YLPGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLP 360

Query: 361  WKANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK 420
            WKANISLDDSLVYVHRVQITPA+VYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK
Sbjct: 361  WKANISLDDSLVYVHRVQITPARVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDK 420

Query: 421  IHSSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASR 480
            IHSSDLSPRTSTEKIERT VYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFA R
Sbjct: 421  IHSSDLSPRTSTEKIERTSVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFAPR 480

Query: 481  EGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIK 540
            EGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPD EVERKNIK
Sbjct: 481  EGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDVEVERKNIK 540

Query: 541  YCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSML 600
            YCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSML
Sbjct: 541  YCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSML 600

Query: 601  KYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSK 660
            KYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFV QQKKAVDQLDSILRDPSK
Sbjct: 601  KYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVNQQKKAVDQLDSILRDPSK 660

Query: 661  ALEVLELMSPGEMTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRT 720
            ALEVLELMSPGEMTS+LKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRT
Sbjct: 661  ALEVLELMSPGEMTSILKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRT 720

Query: 721  MMGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT 780
            MMGCLDETR+LEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT
Sbjct: 721  MMGCLDETRSLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKT 780

Query: 781  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD 840
            LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD
Sbjct: 781  LHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLD 840

Query: 841  HDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKT 900
            HDVT+EEVQEYFANYMVNDGLGGIANAHTVFAD KPKKAMSAECIELAKLFSIAVDFPKT
Sbjct: 841  HDVTIEEVQEYFANYMVNDGLGGIANAHTVFADKKPKKAMSAECIELAKLFSIAVDFPKT 900

Query: 901  GVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVK 960
            GVPANLPRSLRVH+YPDFMEKPNKR+YISNGVIGKLFRGVKDVSSDINNIETFTREVA K
Sbjct: 901  GVPANLPRSLRVHQYPDFMEKPNKRSYISNGVIGKLFRGVKDVSSDINNIETFTREVAAK 960

Query: 961  CYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRN 1020
            CYDPDMEVMGFENYLSEAFDYK MYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRN
Sbjct: 961  CYDPDMEVMGFENYLSEAFDYKSMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRN 1020

Query: 1021 DMEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNE 1080
            DMEQISLAMRSLRKEARGWFNEK SKSIYNNNK ED+EYAKASAWYHVTYHPNFWGRYNE
Sbjct: 1021 DMEQISLAMRSLRKEARGWFNEKGSKSIYNNNKDEDDEYAKASAWYHVTYHPNFWGRYNE 1080

Query: 1081 GMQRDHFLSFPWCVSDKLIQIKREKMESSPVSSLIHKFGKLSFY 1116
            GMQRDHFLSFPWCVS+KLIQIKREKMESSPVSSLIHKFGKLSFY
Sbjct: 1081 GMQRDHFLSFPWCVSEKLIQIKREKMESSPVSSLIHKFGKLSFY 1122

[Close]

BLAST of CmaCh04G021320 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 1217.6 bits (3149), Expect = 0.0e+00
Identity = 634/1105 (57.38%), Postives = 793/1105 (71.76%), Query Frame = 0


Query: 5    GKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVAAE 64
            GKTI+VFGF   VSA EVK+F+E  TG GTV  +++ +PK G G   +A V+F S+    
Sbjct: 2    GKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKG-GPRVYAIVQFTSERHTR 61

Query: 65   YVVEKAEAEEGLWFGRWYLKARGVEREM------RVERMEKVRVQLGSVISKEEMRVIWR 124
             ++    A E L++GR YLKA  VE+++       +  +  +++  G  +S ++   +W 
Sbjct: 62   LII--TAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWS 121

Query: 125  GEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNLFLIQLQGA 184
             ++  V +G GMRKL F  S+     DY++EL +ENI  + L  P   SS   +IQ+ GA
Sbjct: 122  AQDVCVSFGIGMRKLHF--SFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGA 181

Query: 185  PRIFKKCPSSSS---SSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLEVSPGDQLPS 244
            P+IF+K     +       FYS + +  +WIR  DFT SSCIGQS + CLE+     +P 
Sbjct: 182  PKIFEKEDQPINLLFGIMDFYS-DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPD 241

Query: 245  FFQTLVGYKE-IYGPFKLSTGSAFSSTSN-LVPIVTPPQPFDIPYKILFKINALVQHGYL 304
            F +    Y E     F + +GS++SS +N LVP+V PP  F +P++ILFK+N LVQ+  L
Sbjct: 242  FRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACL 301

Query: 305  PGSALDDKFFRLVDPSRFRSDYIEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWK 364
             G ALD  F+RL++  ++    I++ LEKLF L ECCYEP  WL+ +Y  + S  +LP  
Sbjct: 302  SGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLS 361

Query: 365  ANISLDDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIH 424
              ISLDD LVY++RVQ+TPA+VYF GPE N+SNRV+R +   I+NFLRVSFVDE+L+K+ 
Sbjct: 362  PTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVR 421

Query: 425  SSDLSPRTSTEKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREG 484
            S DLSPR+ST++  RT++YDRI SVLR+GIVIG KKFEFLAFS+SQLRENS WMFA  + 
Sbjct: 422  SMDLSPRSSTQR--RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDR 481

Query: 485  LNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEVIPDAEVERKNIKYC 544
            + AA IR WMGDF  IRNVAKYAARLGQSF SSR+TL V  +EIEVIPD E+     +Y 
Sbjct: 482  ITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYV 541

Query: 545  FSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPTSKKKLSLRKSMLKY 604
            FSDGIGKIS   A  VA KCGL   +PSAFQIRY GYKGVVAVDP S KKLSLRKSM K+
Sbjct: 542  FSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKF 601

Query: 605  MSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKAL 664
             S +T+LDVL+WSKYQPC++NRQ+I LLSTLG+ D VF K+Q++ VD+LD+IL  P +A 
Sbjct: 602  ESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAH 661

Query: 665  EVLELMSPGEMTSVLKDMLLF-YNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTM 724
            E L LM+PGE T++LK ++L  Y P  EPFL+MML+ FRA KLL+LRTK+RIF+  GR+M
Sbjct: 662  EALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSM 721

Query: 725  MGCLDETRTLEYGQVFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTL 784
            MGCLDETRTLEYGQV +  S P R     F++ G VVVAKNPCLHPGDVRVL AV+V  L
Sbjct: 722  MGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNVPAL 781

Query: 785  HHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIKPMSYEPAPTIQLDH 844
            +HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL   R  +PM Y P PT  LDH
Sbjct: 782  NHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQILDH 841

Query: 845  DVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAVDFPKTG 904
            DVT+EEV+EYFANY+VND LG IANAHT FAD +P KA S  CIELAK FS AVDFPKTG
Sbjct: 842  DVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFPKTG 901

Query: 905  VPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDVSSDINNIETFTREVAVKC 964
            V A +P+ L V EYPDFMEKP+K TY S  VIGKLFR VK+ +  + +I++FT +VA K 
Sbjct: 902  VAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVASKS 961

Query: 965  YDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGKSFDKRND 1024
            YD DMEV GFE Y+ EAF  K  YDFKLGNLMDYYGI+TE E++SG I+RM KSF KR D
Sbjct: 962  YDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRD 1021

Query: 1025 MEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEG 1084
             E I  A+R+LRKE         + S++N ++ E+NE AKASAWYHVTYH ++WG YNEG
Sbjct: 1022 AESIGRAVRALRKE---------TLSLFNASEEEENESAKASAWYHVTYHSSYWGLYNEG 1081

Query: 1085 MQRDHFLSFPWCVSDKLIQIKREKM 1098
            + RDHFLSF WCV DKL++IK+  +
Sbjct: 1082 LNRDHFLSFAWCVYDKLVRIKKTNL 1088

[Close]

BLAST of CmaCh04G021320 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 758.4 bits (1957), Expect = 7.8e-219
Identity = 458/1147 (39.93%), Postives = 649/1147 (56.58%), Query Frame = 0


Query: 3    TNGKTIEVFGFRREVSAGEVKEFMENHTGEGTVSKVRISKPKDGKGRLTFARVEFRSKVA 62
            TN  T+++    + + A E+  F+E H GE TV  + I   +D      FARV+F + + 
Sbjct: 7    TNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQF-TTLE 66

Query: 63   AEYVVEKAEAEEGLWFGRWYLKARGVEREMRVERMEKVRVQLGSVI------SKEEMRVI 122
             +   +   ++  L F    L+      ++ + R    R +L  ++        +E R  
Sbjct: 67   VKSRAQLLSSQSKLLFKTHNLRLSEAYDDI-IPRPVDPRKRLDDIVLTVGFPESDEKRFC 126

Query: 123  ----WRGEEWSVEYGNGMRKLWFYLSYGVEDDDYKMELRFENILGVQLRCPHNSSSNL-- 182
                W G    +       + W + S     D YK+E+RFE+I+     C +  +S +  
Sbjct: 127  ALEKWDGVRCWILTEKRRVEFWVWES----GDCYKIEVRFEDIIETLSCCVNGDASEIDA 186

Query: 183  FLIQLQGAPRIFKK----CPSSSSSSSQFYSKESTGFRWIRDVDFTPSSCIGQSFSLCLE 242
            FL++L+  P++FK+      +   S    + KE   F WIR  DF+ S  IG S   CLE
Sbjct: 187  FLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLE 246

Query: 243  VSPGDQLPSFFQTLVGYKEIYGPFKLSTGSAFSSTSNLVPIVTPP-QPFDIPYKILFKIN 302
            V  G  +   F  L  Y+E         G  F+S + +VP++       + PY+ILF++N
Sbjct: 247  VHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLN 306

Query: 303  ALVQHGYLPGSALDDKFFRLVDPSRFRS-DYIEYALEKLFSLKECCYEPQKWLKQQYLSF 362
            ALV    +   A  D    L+   R  S +     L+KL      CY+P  ++K Q  S 
Sbjct: 307  ALVHAQKISLFAASD--MELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSV 366

Query: 363  CSSMQ-LPWKANISL-DDSLVYVHRVQITPAKVYFRGPEANLSNRVVRRFIDDIDNFLRV 422
               M+  P  A   L + +++   R  +TP+K+Y  GPE   +N VV+ F + + +F+RV
Sbjct: 367  VKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRV 426

Query: 423  SFVDEELDKIHSSDLSPRTST---EKIERTRVYDRILSVLRNGIVIGGKKFEFLAFSASQ 482
            +FV+E+  K+ ++ LS  +      K  RT +Y+R+LS+L  GI +G K+FEFLAFSASQ
Sbjct: 427  TFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 486

Query: 483  LRENSFWMFASREGLNAADIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEENEIEV 542
            LR NS WMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V   ++E 
Sbjct: 487  LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 546

Query: 543  IPDAEVERKNIKYCFSDGIGKISEALAEMVAEKCGLISHTPSAFQIRYAGYKGVVAVDPT 602
            IPD EV      YCFSDGIGKIS A A+ VA+KCGL SH PSAFQIRY GYKGV+AVD +
Sbjct: 547  IPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDRS 606

Query: 603  SKKKLSLRKSMLKYMSLDTQLDVLSWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAV 662
            S +KLSLR SMLK+ S +  L+V  W++  PCFLNR++I LLSTLGI D +F   Q   +
Sbjct: 607  SFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHL 666

Query: 663  DQLDSILRDPSKALEVLELMSPGEMTSVLKDMLL-FYNPHEEPFLNMMLRTFRADKLLDL 722
              L ++L D   AL VL+ +S     ++L  MLL  Y P  EP+L+MMLR     +L +L
Sbjct: 667  SMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSEL 726

Query: 723  RTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCSVP------------GRSSESNFVVKG 782
            +++ RI VPKGR ++GC+DE   LEYGQV++  ++              +  E   VV G
Sbjct: 727  KSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIG 786

Query: 783  KVVVAKNPCLHPGDVRVLDAVDVKTLHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLYF 842
            KVVV KNPCLHPGD+RVLDA+          +DC++FPQKG+RPHPNECSG DLDGD +F
Sbjct: 787  KVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFF 846

Query: 843  VCWDPELTCIRPIKPMSYEPAPTIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFAD 902
            V WD ++       PM Y  +    +DHDVTLEE+ ++F +YM++D LG I+ AH V AD
Sbjct: 847  VSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHAD 906

Query: 903  MKPKKAMSAECIELAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVI 962
              P+KA S +C+ELA L S AVDF KTG PA +P +L+  E+PDF+E+  K TYIS  V 
Sbjct: 907  RDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVF 966

Query: 963  GKLFRGVKDVSSDINNIETFTREVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLM 1022
            GKL+R VK   S +   +          YD  +E  GFE+++  A  ++ MY  KL +LM
Sbjct: 967  GKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLM 1026

Query: 1023 DYYGIETEPELVSGNILRMGKSFDKRND------MEQISLAMRSLRKEARGWFNEKASKS 1082
             YYG   E E+++G IL+  + +  R++       ++I+L+++ L KEA GWF +     
Sbjct: 1027 IYYGAANEEEILTG-ILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSC--- 1086

Query: 1083 IYNNNKGEDNEYAKASAWYHVTYHPNFWGRYNEGMQRDH---FLSFPWCVSDKLIQIKRE 1103
                 + E  +   ASAWY+VTY+PN          RD    FLSFPW V D L+ IK E
Sbjct: 1087 -----EDEQQKKKLASAWYYVTYNPN---------HRDEKLTFLSFPWIVGDVLLDIKAE 1123

[Close]

BLAST of CmaCh04G021320 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 578.2 bits (1489), Expect = 1.5e-164
Identity = 391/1070 (36.54%), Postives = 575/1070 (53.74%), Query Frame = 0


Query: 96   RMEKVRVQLGSVISKEEMRVIWRGE--EWSVEYGNGMRKLWFYLS----------YGVED 155
            ++  + +++G+++S+++  V WR E  ++ V+  +   K  F  S          + V +
Sbjct: 131  KLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVIN 190

Query: 156  DDYKMELRFENILGV-QLRCPHNSSSNLFLIQLQGAPRIFKKCPSSSSSSSQFYSKESTG 215
             DYK+EL   +I  V Q +  H     + ++QL  +PR++ +        +         
Sbjct: 191  CDYKLELLVRDIQTVRQYKTLHGF---VLILQLASSPRVWYRTADDDIYDTVPGDLLDDD 250

Query: 216  FRWIRDVDFTPSSCIGQSFSLCLEVSPGDQ------LPSFFQTLVGYKEIYGPFKLSTGS 275
              WIR  DFT    IG+  S  + +SP  +      L  F    V  + +  P ++    
Sbjct: 251  DPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEP 310

Query: 276  AFSS-TSNLVPIVTPPQPFDIPYKILFKINALVQHGYLPGSALDDKFFRLVDPSRFRSDY 335
             F    S+    +   +   I ++I+F +N+++  G      L ++FF L+       D 
Sbjct: 311  CFGEPVSDHFFCIHHKE--GISFEIMFLVNSVLHRGVFNQFQLTERFFDLL--RNQPKDV 370

Query: 336  IEYALEKLFSLKECCYEPQKWLKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKV 395
               +L+ L + K   ++  K LK        + +L      S D S   + R+ ITP + 
Sbjct: 371  NIASLKHLCTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDIS--EIRRLVITPTRA 430

Query: 396  YFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLS--------PRTSTEKIE 455
            Y   PE  LSNRV+RR+    + FLRV+F+DE +  I+S+ LS          TS+   +
Sbjct: 431  YCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQ 490

Query: 456  RTRVYDRILSVLRNGIVIGGKKFEFLAFSASQLRENSFWMFASREGLNAADIREWMGDFR 515
            +T V+ R+ S+L +G  + G+K+ FLAFSA+QLR+ S W FA       +DI+ WMG F+
Sbjct: 491  KTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFK 550

Query: 516  EIRNVAKYAARLGQSFGSSRKTLCVEENEIEV-IPDAEVERKNIKYCFSDGIGKISEALA 575
            + +NVAK AAR+G  F S+  T+ V  +E++  +PD  +ER    Y FSDGIG I+  LA
Sbjct: 551  D-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPD--IERNG--YVFSDGIGTITPDLA 610

Query: 576  EMVAEKCGL-ISHTPSAFQIRYAGYKGVVAVDPTSKK--KLSLRKSMLKYMSLDTQLDVL 635
            + V EK  L + ++P A+QIRYAG+KGVVA  P+     +L+LR SM K+ S  T L++ 
Sbjct: 611  DEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEIC 670

Query: 636  SWSKYQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGE 695
            SW+++QP FLNRQ+I LLS LG+ D++F   Q+  + +L+ IL D   A EVL      +
Sbjct: 671  SWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQ 730

Query: 696  MTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLE 755
              +    +   + P  EP L  ML + R  +L  LR KSRIFV  GR +MGCLDE   LE
Sbjct: 731  GNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILE 790

Query: 756  YGQVFIHCSVP----------GRSSESNF---VVKGKVVVAKNPCLHPGDVRVLDAVDVK 815
            +GQ FI  S P           R  E+     VVKG V +AKNPCLHPGDVR+L+AVDV 
Sbjct: 791  HGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVP 850

Query: 816  TLHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIRPIK----PMSYEPAP 875
             LHHM DC++FPQKG RPH NE SGSDLDGDLYFV WD +L  I P +     M Y+ A 
Sbjct: 851  QLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKL--IPPNRKSYPAMHYDAAE 910

Query: 876  TIQLDHDVTLEEVQEYFANYMVNDGLGGIANAHTVFADMKPKKAMSAECIELAKLFSIAV 935
               L   V  +++ ++FA  + N+ LG I NAH V AD     AM  EC+ LA+L + AV
Sbjct: 911  EKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAV 970

Query: 936  DFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGVKDV-SSDINNIETFT 995
            DFPKTG   ++P  L+   YPDFM K + +TY SN ++G+L+R VK+V   D       +
Sbjct: 971  DFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEES 1030

Query: 996  REVAVKCYDPDMEVMGFENYLSEAFDYKRMYDFKLGNLMDYYGIETEPELVSGNILRMGK 1055
             + +   YD  +E+ GFE+ + EA+ +K +YD +L  L+  Y ++ E E+V+G+I  M K
Sbjct: 1031 TDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPK 1090

Query: 1056 SFDKRND--MEQISLAMRSLRKEARGWFNEKASKSIYNNNKGEDNE----YAKASAWYHV 1105
               K+     E++  +  SL+KE R  F E       + N  E+ +      KASAWYHV
Sbjct: 1091 YTSKKQGELKERLKHSYNSLKKEFRKVFEETIPD---HENLSEEEKNILYEKKASAWYHV 1150

[Close]

BLAST of CmaCh04G021320 vs. TAIR 10
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-31
Identity = 188/740 (25.41%), Postives = 301/740 (40.68%), Query Frame = 0


Query: 331 YEPQKW--LKQQYLSFCSSMQLPWKANISLDDSLVYVHRVQITPAKVY-------FRGPE 390
           YE   W  L + Y        L W      D    + ++  + P   Y        +GP 
Sbjct: 174 YEAAVWDRLGRHYCPQKDRRMLQW------DSGKTHYYQCNVAPNGSYTFKVLSALQGPL 233

Query: 391 ANLSNRVVRRFIDDIDNFLRVSFVDEELDKIHSSDLSPRTSTEKIERTRVYDRILSVLRN 450
              +   + + + D DN L V F          +D+   +ST  I+    Y     + +N
Sbjct: 234 LEHTGTHLHKVLGD-DNVLTVKF----------ADVQKSSSTYSIDHYFTYK---GIAKN 293

Query: 451 GIVIGGKKFEFLAFSASQLRE-------------------NSFWMFASREGLNAADIREW 510
           GI+IG ++++F  F      E                    +F+   +   L    I E 
Sbjct: 294 GIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEA 353

Query: 511 MGDFREIR---NVAKYAARLGQSFGSSRKTLCVEENEI--EVIPD--------AEVERKN 570
              F  +     +A Y AR      S  KTL V+   I  + I D         +V  KN
Sbjct: 354 RMHFMHVHRAPTLANYMARFSLIL-SKTKTLEVDMTGITFDQIDDIHCHDQDGKDVLDKN 413

Query: 571 IKYCF-SDGIGKISEALAEM---------------VAEKCGLISHTPSAFQIRYAGY--K 630
            K C  SDG G ISE LA M               + E C         F++ Y GY  K
Sbjct: 414 KKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVK 473

Query: 631 GVVAVD-PTSKKKLSLRKSMLKY--------MSLDTQLDVLSWSK-YQPCFLNRQVINLL 690
           G   ++     + + +R SM+K          S    L+V++ S   +   L++ ++ LL
Sbjct: 474 GTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALL 533

Query: 691 STLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGEMTSV-LKDMLLFYNPHEE 750
           S  GI ++ F+      +++  SI  +   AL     ++ GEM       M+L   P +E
Sbjct: 534 SYGGIPNEFFLDILLNTLEESKSIFYNKRAALNA--ALNYGEMDDQNAAQMILVGIPLDE 593

Query: 751 PFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFIHCSVPGRSSES 810
           P L   L      +  DL+   ++ V +   +MG +D T  L+  +V +           
Sbjct: 594 PHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVIL--------E 653

Query: 811 NFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD----CVVFPQKGKRPHPNECSGS 870
           +  + G+V+V +NP LH GD+ +L A  VK L   V      V FPQKG R   +E +G 
Sbjct: 654 SGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGG 713

Query: 871 DLDGDLYFVCWDPE-LTCIRPIKP-MSYEP--------APTIQLDHDVTLEEVQEYF--A 930
           D DGD+YF+  +PE L   +P +P +S  P        AP+ QL  +   EE+ E F  A
Sbjct: 714 DFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPS-QLSPEELEEELFEMFLTA 773

Query: 931 NYMVNDGLGGIANAHTVFAD---------MKPKKAMSAECIELAKLFSIAVDFPKTGVPA 969
            +  ++ +G  A++     D          + K  M  + +EL  ++  A+D PK G   
Sbjct: 774 GFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKV 833

[Close]

BLAST of CmaCh04G021320 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-29
Identity = 141/517 (27.27%), Postives = 219/517 (42.36%), Query Frame = 0


Query: 522 DAEVERKNIKYCF-SDGIGKISEALAEM---------------VAEK---------CGLI 581
           D +V  KN K C  SDG G ISE LA M               +  K         CG  
Sbjct: 389 DKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCGQE 448

Query: 582 SHTPSAFQIRYAGYKGVVAVDPTSKK----KLSLRKSMLKY--------MSLDTQLDVLS 641
                 F+I Y GY  V     T+KK     + +R SM+K         +S    L+V++
Sbjct: 449 PPLLIQFRIFYNGY-AVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVT 508

Query: 642 WSK-YQPCFLNRQVINLLSTLGIRDDVFVKQQKKAVDQLDSILRDPSKALEVLELMSPGE 701
            S   +   L+R ++ LLS  G+ +D F+   +  +++  +I      A +        +
Sbjct: 509 TSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQ 568

Query: 702 MTSVLKDMLLFYNPHEEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLE 761
            T+   DM+L   P +EP+L   L      +   L+   R  + +   +MG +D T  L+
Sbjct: 569 YTA---DMILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELK 628

Query: 762 YGQ--VFIHCSVPGRSSESNFVVKGKVVVAKNPCLHPGDVRVLDAVDVKTLHHMVD---- 821
             +  V +H             + G V+V +NP LH GD+ VL A  VK L   V     
Sbjct: 629 ENEICVILHSG----------QISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKF 688

Query: 822 CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPE-LTCIRPIKPMSYEPAPT--------I 881
            V FPQKG R   +E +G D DGD+YF+  +P+ L   +P +P      P+         
Sbjct: 689 AVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKPS 748

Query: 882 QLDHDVTLEEVQEYF--ANYMVNDGLG-------GIANAHTVFAD--MKPKKAMSAECIE 941
           +L  +   EE+ + F  A +   D +G       GI +      D   K K       ++
Sbjct: 749 ELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNILK 808

Query: 942 LAKLFSIAVDFPKTGVPANLPRSLRVHEYPDFMEKPNKRTYISNGVIGKLFRGV------ 969
           L  ++  A+D PK G   +LP  L +  +P +ME+  KR + S  ++G +F  V      
Sbjct: 809 LIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAE 868

The following BLAST results are available for this feature:

BLAST of CmaCh04G021320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQV2	0.0e+00	57.38	RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1	[more]
Q0DXS3	2.4e-265	63.54	Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
O82504	1.1e-217	39.93	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1	[more]
Q7XM31	1.7e-210	41.45	Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9SG02	2.0e-163	36.54	RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1	[more]

BLAST of CmaCh04G021320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTB1	0.0e+00	100.00	RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111487656 PE=3 SV...	[more]
A0A6J1EB47	0.0e+00	96.53	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111430971 PE=3 ...	[more]
A0A6J1FF44	0.0e+00	81.82	RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 ...	[more]
A0A6J1K1Q3	0.0e+00	81.36	RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111489826 PE=3 SV...	[more]
A0A0S1YCZ4	0.0e+00	79.59	RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1	[more]

BLAST of CmaCh04G021320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990904.1	0.0e+00	100.00	probable RNA-dependent RNA polymerase 1 [Cucurbita maxima]	[more]
KAG7032582.1	0.0e+00	96.80	RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
KAG6601883.1	0.0e+00	97.40	RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022923210.1	0.0e+00	96.53	probable RNA-dependent RNA polymerase 1 [Cucurbita moschata]	[more]
XP_023524048.1	0.0e+00	96.26	probable RNA-dependent RNA polymerase 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh04G021320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14790.1	0.0e+00	57.38	RNA-dependent RNA polymerase 1	[more]
AT4G11130.1	7.8e-219	39.93	RNA-dependent RNA polymerase 2	[more]
AT3G49500.1	1.5e-164	36.54	RNA-dependent RNA polymerase 6	[more]
AT2G19930.1	5.5e-31	25.41	RNA-dependent RNA polymerase family protein	[more]
AT2G19910.1	1.0e-29	27.27	RNA-dependent RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PFAM	PF05183	RdRP	coord: 370..931 e-value: 1.3E-184 score: 615.1
IPR007855	RNA-dependent RNA polymerase, eukaryotic-type	PANTHER	PTHR23079	RNA-DEPENDENT RNA POLYMERASE	coord: 5..1102
None	No IPR available	PANTHER	PTHR23079:SF27	RNA-DEPENDENT RNA POLYMERASE	coord: 5..1102
None	No IPR available	CDD	cd00590	RRM_SF	coord: 8..69 e-value: 1.14369E-4 score: 39.5957
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G021320.1	CmaCh04G021320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0001172	transcription, RNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding