|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. TTTCCAGCGATTTTGGGGAGGTTGAGCCCTACGCGGGGCGCTTATGATTCGGGAATGCGAATATGCGCGCCGTCCAACAAGAACATTCTTTTCTCTAATTCGCATCTTCTTATTCTTATTCTGATTCTTATTTTGATTCTCCTCCATTTTCCACTTCCAGCACCCAAACTCCACTTTATCTCGCCTCTGAAACTGAACCACCGCGCCTCTACTCAATCTAGCCGCCGGCATCTCCATCAATATCTTCGTCGTCTTCTTTCAGGGTACCTATAACTACCCATTGTATTCATGAATGAAGTTTTCTATTTCTCTCCCCTTTCGTATCTCAAATATTTTCCCTCAATTTCAATCTGGAATCCCTTCTGGGTTTCCCCTTTTTTGTGTTTAGTTTCCTGAAATGTCGGATTTCTTAGGCCCCCATGCGTTCGTTTCATCTTAAGTACGCGTCATGCCAATGGGAGTTTAGAAATGCCGACAAGGTGTTTGATAATATGCATCATATTTGTTTTCCCTCCATCCTGCTTCCAAATTGAGCTTCCAATGATTCAAAAACAAAGATTAAATAATGGGCATGAGTTTTTTATTCAACTTTTTATAATTTTAAATTTTGTTTTGGGAGGTGTTCTTCAGTGATTTGATTTAGAAGTGAGTTATAACTCTGCTTTTTACTTGTGCAGTTGA mRNA sequence TTTCCAGCGATTTTGGGGAGGTTGAGCCCTACGCGGGGCGCTTATGATTCGGGAATGCGAATATGCGCGCCGTCCAACAAGAACATTCTTTTCTCTAATTCGCATCTTCTTATTCTTATTCTGATTCTTATTTTGATTCTCCTCCATTTTCCACTTCCAGCACCCAAACTCCACTTTATCTCGCCTCTGAAACTGAACCACCGCGCCTCTACTCAATCTAGCCGCCGGCATCTCCATCAATATCTTCGTCGTCTTCTTTCAGGTTGA Coding sequence (CDS) ATGCGAATATGCGCGCCGTCCAACAAGAACATTCTTTTCTCTAATTCGCATCTTCTTATTCTTATTCTGATTCTTATTTTGATTCTCCTCCATTTTCCACTTCCAGCACCCAAACTCCACTTTATCTCGCCTCTGAAACTGAACCACCGCGCCTCTACTCAATCTAGCCGCCGGCATCTCCATCAATATCTTCGTCGTCTTCTTTCAGGTTGA Protein sequence MRICAPSNKNILFSNSHLLILILILILILLHFPLPAPKLHFISPLKLNHRASTQSSRRHLHQYLRRLLSG
Homology
BLAST of CmaCh04G021260 vs. NCBI nr
Match: KAG7032579.1 (hypothetical protein SDJN02_06628, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 106.7 bits (265), Expect = 8.3e-20 Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0
Query: 1 MRICAPSNK--NILFSNSHLLILILILILILLHFPLPAPKLHFISPLKLNHRASTQSSRR 60
MRICAPSNK ILF+NSHL LILIL+LLHFPLPAPKLHFISPLK NHRASTQS RR
Sbjct: 24 MRICAPSNKKMRILFTNSHL----LILILLLLHFPLPAPKLHFISPLKPNHRASTQSRRR 83
Query: 61 HLHQYLRRLLSG 71
HLHQYL RLLSG
Sbjct: 84 HLHQYLPRLLSG 91
BLAST of CmaCh04G021260 vs. NCBI nr
Match: KAG6601878.1 (hypothetical protein SDJN03_07111, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 106.7 bits (265), Expect = 8.3e-20 Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0
Query: 1 MRICAPSNK--NILFSNSHLLILILILILILLHFPLPAPKLHFISPLKLNHRASTQSSRR 60
MRICAPSNK ILF+NSHL LILIL+LLHFPLPAPKLHFISPLK NHRASTQS RR
Sbjct: 24 MRICAPSNKKMRILFTNSHL----LILILLLLHFPLPAPKLHFISPLKPNHRASTQSRRR 83
Query: 61 HLHQYLRRLLSG 71
HLHQYL RLLSG
Sbjct: 84 HLHQYLPRLLSG 91
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG7032579.1 | 8.3e-20 | 83.33 | hypothetical protein SDJN02_06628, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6601878.1 | 8.3e-20 | 83.33 | hypothetical protein SDJN03_07111, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
