CmaCh04G021240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G021240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	conserved peptide upstream open reading frame 28
Location	Cma_Chr04: 14882265 .. 14882575 (+)
RNA-Seq Expression	CmaCh04G021240
Synteny	CmaCh04G021240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAAAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGTGTTGACCCTTGAGATCTCTTTCTCTCTAATCCATATACTCATTTGAAGGAATTTTCATTTTCTTTAAGTTTTTGCGATTTTACTCTCTCGATTTTTTGATACCGGCGCTAGCTTCGGTGAGTTTCTCGGGGCTATTGTCGTCGGTATCCGGTTCCCTGATTCGGATATAG

mRNA sequence

ATGGTTGAAAAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAATTTTCATTTTCTTTAAGTTTTTGCGATTTTACTCTCTCGATTTTTTGATACCGGCGCTAGCTTCGGTGAGTTTCTCGGGGCTATTGTCGTCGGTATCCGGTTCCCTGATTCGGATATAG

Coding sequence (CDS)

ATGGTTGAAAAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTGCTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAATTTTCATTTTCTTTAAGTTTTTGCGATTTTACTCTCTCGATTTTTTGATACCGGCGCTAGCTTCGGTGAGTTTCTCGGGGCTATTGTCGTCGGTATCCGGTTCCCTGATTCGGATATAG

Protein sequence

MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGIFIFFKFLRFYSLDFLIPALASVSFSGLLSSVSGSLIRI

Homology

[Close]

BLAST of CmaCh04G021240 vs. ExPASy TrEMBL
Match: A0A1S3CSS9 (uncharacterized protein LOC103504558 OS=Cucumis melo OX=3656 GN=LOC103504558 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGI 49
          MVE+NSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLG+
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGV 48

[Close]

BLAST of CmaCh04G021240 vs. ExPASy TrEMBL
Match: A0A5D3E3V5 (Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00320 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 41
          MVE+NSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 40

[Close]

BLAST of CmaCh04G021240 vs. ExPASy TrEMBL
Match: A0A251R6V3 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G329400 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-10
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 7  SSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGI 49
          S SN+MRSLL SRASA LP+SAAS+FAFGSCKEGWYYRCLG+
Sbjct: 6  SISNFMRSLLQSRASAFLPISAASAFAFGSCKEGWYYRCLGV 47

[Close]

BLAST of CmaCh04G021240 vs. ExPASy TrEMBL
Match: A0A5D2MAG5 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G186600v1 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.7e-08
Identity = 35/48 (72.92%), Postives = 37/48 (77.08%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGI 49
          MVE   S S  M SL  SRAS  LPLSAAS+FAFGSCKEGWYYRCLG+
Sbjct: 1  MVETIWSCSILMLSLCKSRASTLLPLSAASAFAFGSCKEGWYYRCLGL 48

[Close]

BLAST of CmaCh04G021240 vs. ExPASy TrEMBL
Match: A0A2P6R3E4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441831 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.7e-08
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 7  SSSNYMRSLLDSRASAR-LPLSAASSFAFGSCKEGWYYRCLGI 49
          S SN+MRS+  SRASA  LP+SAAS+F+FGSCKEGWYYRCLG+
Sbjct: 6  SISNFMRSIAQSRASAAILPVSAASAFSFGSCKEGWYYRCLGV 48

[Close]

BLAST of CmaCh04G021240 vs. NCBI nr
Match: XP_008467130.2 (PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo])

HSP 1 Score: 94.4 bits (233), Expect = 5.3e-16
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGI 49
          MVE+NSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLG+
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGV 48

[Close]

BLAST of CmaCh04G021240 vs. NCBI nr
Match: KAG7032577.1 (hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-15
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGIFIF 52
          MVE+NSSSSNYMRSLLDSRASARLPLSA SSFAFGSCKEGWYYRCLG+ ++
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLGMLLY 51

[Close]

BLAST of CmaCh04G021240 vs. NCBI nr
Match: KAA0046326.1 (senescence-associated protein [Cucumis melo var. makuwa] >TYK30489.1 senescence-associated protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 41
          MVE+NSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG
Sbjct: 1  MVEENSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEG 40

[Close]

BLAST of CmaCh04G021240 vs. NCBI nr
Match: XP_016647517.1 (PREDICTED: uncharacterized protein LOC107880498 [Prunus mume] >ONI31761.1 hypothetical protein PRUPE_1G329400 [Prunus persica])

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-10
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 7  SSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGI 49
          S SN+MRSLL SRASA LP+SAAS+FAFGSCKEGWYYRCLG+
Sbjct: 6  SISNFMRSLLQSRASAFLPISAASAFAFGSCKEGWYYRCLGV 47

[Close]

BLAST of CmaCh04G021240 vs. NCBI nr
Match: KAG6579252.1 (hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 47/80 (58.75%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGIFIFFKFLRFYSL 60
          MVE+NS SSNYMRSLLDSRASARLPLSAASSFAFGSCKEGW             L+ Y  
Sbjct: 1  MVEENSCSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWLSSVADSLFLGYNLKKYKK 60

Query: 61 DFLIPALASVSFSGLLSSVS 81
           F +    +V  + LL SV+
Sbjct: 61 GFGLKKNQNVKGNRLLISVN 80

[Close]

BLAST of CmaCh04G021240 vs. TAIR 10
Match: AT1G70782.1 (conserved peptide upstream open reading frame 28 )

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-09
Identity = 29/48 (60.42%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRASARLPLSAASSFAFGSCKEGWYYRCLGI 49
          MVE N     +  SL   RAS  LPLS +S FAFGSCKEGWY+RCLG+
Sbjct: 1  MVETNPIGGKFTLSLSIKRASFSLPLSTSSVFAFGSCKEGWYFRCLGL 48

[Close]

BLAST of CmaCh04G021240 vs. TAIR 10
Match: AT1G23149.1 (conserved peptide upstream open reading frame 29 )

HSP 1 Score: 50.4 bits (119), Expect = 8.1e-07
Identity = 26/49 (53.06%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 1  MVEKNSSSSNYMRSLLDSRAS-ARLPLSAASSFAFGSCKEGWYYRCLGI 49
          MVE N    N+  +L   RAS   +PLS  S F+FGSCKEGWY+RC+G+
Sbjct: 1  MVETNLIGDNHRLTLSTKRASFLIIPLSQDSVFSFGSCKEGWYFRCIGL 49

The following BLAST results are available for this feature:

BLAST of CmaCh04G021240 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G021240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CSS9	2.5e-16	95.83	uncharacterized protein LOC103504558 OS=Cucumis melo OX=3656 GN=LOC103504558 PE=...	[more]
A0A5D3E3V5	1.6e-10	97.50	Senescence-associated protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A251R6V3	3.6e-10	83.33	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G329400 PE=4 SV=1	[more]
A0A5D2MAG5	9.7e-08	72.92	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G186600v1 P...	[more]
A0A2P6R3E4	9.7e-08	74.42	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0441831 PE=4...	[more]

BLAST of CmaCh04G021240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008467130.2	5.3e-16	95.83	PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo]	[more]
KAG7032577.1	3.4e-15	88.24	hypothetical protein SDJN02_06626, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0046326.1	3.3e-10	97.50	senescence-associated protein [Cucumis melo var. makuwa] >TYK30489.1 senescence-...	[more]
XP_016647517.1	7.4e-10	83.33	PREDICTED: uncharacterized protein LOC107880498 [Prunus mume] >ONI31761.1 hypoth...	[more]
KAG6579252.1	1.3e-09	58.75	hypothetical protein SDJN03_23700, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh04G021240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70782.1	3.0e-09	60.42	conserved peptide upstream open reading frame 28	[more]
AT1G23149.1	8.1e-07	53.06	conserved peptide upstream open reading frame 29	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G021240.1	CmaCh04G021240.1	mRNA