CmaCh04G021200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G021200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
Location	Cma_Chr04: 14832901 .. 14834146 (-)
RNA-Seq Expression	CmaCh04G021200
Synteny	CmaCh04G021200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCCTTTTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTCTGGGAGTGAACAGAGTTCAGTTTTGAATATGAACTTCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCCCCCTTTAAGCTCCTCAAACTGCCCTCCAACTCAACCTCCATTAATGTCCTCTCTCTTTCTCTCTCTTCTTCTCTCTCTCTCTCTCTCTCTCTTGTTTCTCTCTCTTAACATGTATTTTCTTTCTGGGTTTAGTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTAAGCAAGTTTCAAATGTTACCCTTTTGCTTTTTCTCATTCTCAATTTTAAAATTGGATTAAAAATGAAATCGGAGCAGGTTGCGGAGCCGGCAAATGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCAGTATGAATTTCCCCTAAACATTTGGTTTCTTTTTCTCTCAGTTTCTTGTGAAATTAAGTTGCATAAGATTTGGTTTTCTGGGTGAAATTTGCAGCCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTTCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGGTACGTCCATTTATAACTACATCCTTTTTTTCCCCATATAATCATATCTTTCTTCTAAGCTGTGACTGAACAAACTGTGCAGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCATCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAACTATTTGTAAAAATGCCTCTTCCAATTTCCAAATTCAAACTCAACCTCCCTTCCCACGACCAACTGCTGCCTTTTTATTCAGCTCATTATGCTCTGTATTTTTGTATAATCGATGCTTCTAATGGAAATATATGGTCCTGTTGAATATTGTTGTTTGTTTGATGGGTCACTTACTGTGCACATTTGGTTCATTTTCTAGGCTTAGGATTAAACTGATATAAGGGAAGAATCCAT

mRNA sequence

TGTCCTTTTGTGGTGTGGCCATGGAGAAAGAAAGATAAGAGAGAGAGAGAGAGAAGAAAAGGGTATGAATTATGATGGAGTTGTGGTTCTGGGAGTGAACAGAGTTCAGTTTTGAATATGAACTTCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCCCCCTTTAAGCTCCTCAAACTGCCCTCCAACTCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAAATGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTTCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCATCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAACTATTTGTAAAAATGCCTCTTCCAATTTCCAAATTCAAACTCAACCTCCCTTCCCACGACCAACTGCTGCCTTTTTATTCAGCTCATTATGCTCTGTATTTTTGTATAATCGATGCTTCTAATGGAAATATATGGTCCTGTTGAATATTGTTGTTTGTTTGATGGGTCACTTACTGTGCACATTTGGTTCATTTTCTAGGCTTAGGATTAAACTGATATAAGGGAAGAATCCAT

Coding sequence (CDS)

ATGAACTTCTCCCTTGGCCTCCACATCCCCAAGGCCCTGCCTTCTCTCTCCTCCCCCTTTAAGCTCCTCAAACTGCCCTCCAACTCAACCTCCATTAATTTTCAGGTGGTGGCAAGCATCAGAGAAGACCCCATTGCCTTTCTTCGCCAAAAGAAAACCAGTTTGTCTCTTCAATTTGCTGCCCTTTTAGCCACTGTTGCGGAGCCGGCAAATGCTGTAACAGGGGACAACAACCATGAGGTTCCACTGACATGGATTTTGACACAATTAGGCATTGTTGGATTCTTTTACTTCCTTGTCTTTCCACCAATCATCATGAACTGGTTGAGGATAAGATGGTATAGAAGAAATTTGTTGGAAATGTATGTTCAATTCATGTGCGTCTTCCTTTGCTTCCCTGGCATTCTATTGTGGGCGCCATTTCTGAACTTCAGAAAGTTCCCACGAGATCCATCGATGAAGTATCCATGGTCGACGCCCCAAGAGCCATCTCAGATCAAAAATGGATACTTGAAGTACCCATTTGCCAAGCCTGAAGATTACGACTGGTAA

Protein sequence

MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPEDYDW

Homology

[Close]

BLAST of CmaCh04G021200 vs. ExPASy Swiss-Prot
Match: Q9CAC5 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhL PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 6.1e-49
Identity = 102/185 (55.14%), Postives = 124/185 (67.03%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSPFKLLKLPSNSTSIN------FQVVASIREDPIAFLRQKKTSLSL 63
           SLGL+ P ALPSLS   + +K P   TS           V  +R      L  KKT L+ 
Sbjct: 6   SLGLYAPNALPSLSLKPRSVKSPFCITSHTKPNDTLLHNVNKMRAKACDILGAKKTILAA 65

Query: 64  QFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRN 123
           Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFLV PPIIMNWLR+RWYRR 
Sbjct: 66  QLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRVRWYRRK 125

Query: 124 LLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAK 183
             EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLKYP+A 
Sbjct: 126 FFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYLKYPYAT 185

[Close]

BLAST of CmaCh04G021200 vs. ExPASy Swiss-Prot
Match: Q10W93 (NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=ndhL PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-05
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 0


Query: 97  YFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 146
           YFLV P I+  +L+ RWY  + +E    +  +FL FPG+L+ +PFLNFR
Sbjct: 22  YFLVMPAIVYAYLKTRWYVVSSIERVFMYFLMFLFFPGMLVLSPFLNFR 70

[Close]

BLAST of CmaCh04G021200 vs. ExPASy Swiss-Prot
Match: Q7U620 (NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX=84588 GN=ndhL PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.4e-05
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 86  ILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 145
           ++    ++G  Y LV P  +  W+  RW R   +E  + +  VFL FPG++++APFLNFR
Sbjct: 17  VILAYALLGGLYLLVVPLALFFWMNSRWTRMGKIERLLVYGLVFLFFPGMVVFAPFLNFR 76

[Close]

BLAST of CmaCh04G021200 vs. ExPASy Swiss-Prot
Match: B0C6G0 (NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=ndhL PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.1e-05
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 86  ILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 145
           ++  LG++G  Y LV P I   +L+ RWY  + LE    +  VF  FP +LL +PFLNFR
Sbjct: 5   LILLLGLLG-GYLLVMPAITYFYLQKRWYVASSLERGFMYFLVFFFFPSLLLLSPFLNFR 64

Query: 146 KFPR 150
             PR
Sbjct: 65  PQPR 67

[Close]

BLAST of CmaCh04G021200 vs. ExPASy Swiss-Prot
Match: Q8DKZ3 (NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=ndhL PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 7.1e-05
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 86  ILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFR 145
           +L   G +   Y LV P I+  +L  RWY  +  E    +  V   FPG+LL APF+NFR
Sbjct: 9   VLGVYGALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFR 68

Query: 146 KFPR 150
             PR
Sbjct: 69  PQPR 72

[Close]

BLAST of CmaCh04G021200 vs. ExPASy TrEMBL
Match: A0A6J1JKK4 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487750 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.2e-101
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA
Sbjct: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 183

[Close]

BLAST of CmaCh04G021200 vs. ExPASy TrEMBL
Match: A0A6J1JV10 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487750 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.9e-98
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSIN  VVASIREDPIAFLRQKKTSLSLQFA
Sbjct: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSIN--VVASIREDPIAFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 181

[Close]

BLAST of CmaCh04G021200 vs. ExPASy TrEMBL
Match: A0A6J1GQ88 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.1e-97
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MN SLGLHIPKALPSLSSPFKLLKLPSN TSI+FQVVA IREDPI FLRQKKTSLSLQFA
Sbjct: 1   MNCSLGLHIPKALPSLSSPFKLLKLPSNPTSISFQVVACIREDPIGFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 183

[Close]

BLAST of CmaCh04G021200 vs. ExPASy TrEMBL
Match: A0A6J1GNR4 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.9e-95
Identity = 177/193 (91.71%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSS----------PFKLLKLPSNSTSINFQVVASIREDPIAFLRQ 60
           MN SLGLHIPKALPSLSS          PFKLLKLPSN TSI+FQVVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSISFQVVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 184
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of CmaCh04G021200 vs. ExPASy TrEMBL
Match: A0A6J1GNU1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111456098 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.3e-94
Identity = 175/183 (95.63%), Postives = 176/183 (96.17%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MN SLGLHIPKALPSLSSPFKLLKLPSN TSI+  VVA IREDPI FLRQKKTSLSLQFA
Sbjct: 1   MNCSLGLHIPKALPSLSSPFKLLKLPSNPTSIS--VVACIREDPIGFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 181

[Close]

BLAST of CmaCh04G021200 vs. NCBI nr
Match: XP_022991037.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 377.5 bits (968), Expect = 6.6e-101
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA
Sbjct: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 183

[Close]

BLAST of CmaCh04G021200 vs. NCBI nr
Match: XP_022991038.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 368.2 bits (944), Expect = 4.0e-98
Identity = 181/183 (98.91%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSIN  VVASIREDPIAFLRQKKTSLSLQFA
Sbjct: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSIN--VVASIREDPIAFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 181

[Close]

BLAST of CmaCh04G021200 vs. NCBI nr
Match: XP_022953639.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 [Cucurbita moschata])

HSP 1 Score: 364.8 bits (935), Expect = 4.4e-97
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSSPFKLLKLPSNSTSINFQVVASIREDPIAFLRQKKTSLSLQFA 60
           MN SLGLHIPKALPSLSSPFKLLKLPSN TSI+FQVVA IREDPI FLRQKKTSLSLQFA
Sbjct: 1   MNCSLGLHIPKALPSLSSPFKLLKLPSNPTSISFQVVACIREDPIGFLRQKKTSLSLQFA 60

Query: 61  ALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120
           ALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE
Sbjct: 61  ALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRNLLE 120

Query: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180
           MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED
Sbjct: 121 MYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAKPED 180

Query: 181 YDW 184
           YDW
Sbjct: 181 YDW 183

[Close]

BLAST of CmaCh04G021200 vs. NCBI nr
Match: XP_023527074.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 179/193 (92.75%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSS----------PFKLLKLPSNSTSINFQVVASIREDPIAFLRQ 60
           MN SLGLHIPKALPSLSS          PFKLLKLPS  TSINFQVVASIREDPIAFLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSKPTSINFQVVASIREDPIAFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 184
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of CmaCh04G021200 vs. NCBI nr
Match: XP_022953622.1 (NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 177/193 (91.71%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 1   MNFSLGLHIPKALPSLSS----------PFKLLKLPSNSTSINFQVVASIREDPIAFLRQ 60
           MN SLGLHIPKALPSLSS          PFKLLKLPSN TSI+FQVVA IREDPI FLRQ
Sbjct: 1   MNCSLGLHIPKALPSLSSSKTISPFLSAPFKLLKLPSNPTSISFQVVACIREDPIGFLRQ 60

Query: 61  KKTSLSLQFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120
           KKTSLSLQFAALLATVAEPA AVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR
Sbjct: 61  KKTSLSLQFAALLATVAEPATAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLR 120

Query: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180
           IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY
Sbjct: 121 IRWYRRNLLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGY 180

Query: 181 LKYPFAKPEDYDW 184
           LKYPFAKPEDYDW
Sbjct: 181 LKYPFAKPEDYDW 193

[Close]

BLAST of CmaCh04G021200 vs. TAIR 10
Match: AT1G70760.1 (inorganic carbon transport protein-related )

HSP 1 Score: 195.3 bits (495), Expect = 4.3e-50
Identity = 102/185 (55.14%), Postives = 124/185 (67.03%), Query Frame = 0


Query: 4   SLGLHIPKALPSLSSPFKLLKLPSNSTSIN------FQVVASIREDPIAFLRQKKTSLSL 63
           SLGL+ P ALPSLS   + +K P   TS           V  +R      L  KKT L+ 
Sbjct: 6   SLGLYAPNALPSLSLKPRSVKSPFCITSHTKPNDTLLHNVNKMRAKACDILGAKKTILAA 65

Query: 64  QFAALLATVAEPANAVTGDNNHEVPLTWILTQLGIVGFFYFLVFPPIIMNWLRIRWYRRN 123
           Q  A+LAT+  PA A+TG NN +  L+ ++  +GI+  +YFLV PPIIMNWLR+RWYRR 
Sbjct: 66  QLGAVLATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRVRWYRRK 125

Query: 124 LLEMYVQFMCVFLCFPGILLWAPFLNFRKFPRDPSMKYPWSTPQEPSQIKNGYLKYPFAK 183
             EMY+QFM VF+ FPG+LLWAPFLNFRKFPRDP+MK PW  P +P  IKN YLKYP+A 
Sbjct: 126 FFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYLKYPYAT 185

The following BLAST results are available for this feature:

BLAST of CmaCh04G021200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAC5	6.1e-49	55.14	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q10W93	4.1e-05	46.94	NAD(P)H-quinone oxidoreductase subunit L OS=Trichodesmium erythraeum (strain IMS...	[more]
Q7U620	5.4e-05	38.33	NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain WH8102) OX...	[more]
B0C6G0	7.1e-05	43.75	NAD(P)H-quinone oxidoreductase subunit L OS=Acaryochloris marina (strain MBIC 11...	[more]
Q8DKZ3	7.1e-05	40.63	NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strai...	[more]

BLAST of CmaCh04G021200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JKK4	3.2e-101	100.00	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita ...	[more]
A0A6J1JV10	1.9e-98	98.91	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 OS=Cucurbita ...	[more]
A0A6J1GQ88	2.1e-97	96.72	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 OS=Cucurbita ...	[more]
A0A6J1GNR4	5.9e-95	91.71	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 OS=Cucurbita ...	[more]
A0A6J1GNU1	1.3e-94	95.63	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X4 OS=Cucurbita ...	[more]

BLAST of CmaCh04G021200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991037.1	6.6e-101	100.00	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita ma...	[more]
XP_022991038.1	4.0e-98	98.91	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X2 [Cucurbita ma...	[more]
XP_022953639.1	4.4e-97	96.72	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X3 [Cucurbita mo...	[more]
XP_023527074.1	1.4e-95	92.75	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita pe...	[more]
XP_022953622.1	1.2e-94	91.71	NAD(P)H-quinone oxidoreductase subunit L, chloroplastic isoform X1 [Cucurbita mo...	[more]

BLAST of CmaCh04G021200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G70760.1	4.3e-50	55.14	inorganic carbon transport protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019654	NAD(P)H-quinone oxidoreductase subunit L	PFAM	PF10716	NdhL	coord: 78..150 e-value: 4.6E-29 score: 100.2
None	No IPR available	PANTHER	PTHR36727	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT L, CHLOROPLASTIC	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G021200.1	CmaCh04G021200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding