CmaCh04G021140 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G021140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Dynein light chain
Location	Cma_Chr04: 14761578 .. 14763143 (-)
RNA-Seq Expression	CmaCh04G021140
Synteny	CmaCh04G021140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGTGGAAATGGAGCTTGAGCGGCGTACTAAGTTTCTAAATGGCCTTATTTTGAAGAAGAAGGCGGTGGAGCAGCAAGACCAGCCCCATCCTCCTCTTAATGTTCGCGTCAGAGCCTCCGATATGTCATTTCCCTTGCAGAATCGCGCTTTTACCTCCGCTCGTCAACTCCTCGATTCCATGCCTGCCAAGCTCGATACCAAACGCCTCGCTCTCGCCCTTAAAAAGGTTACCCAAAAAAATGCGTTTTCATGGTTGCGATTTCCTGACAACTGCAGCTTCCTTATCCAGTTTTCTTTTCAAACTTTGGGTTAGAGAGTTTTTTCAGGGATCCTTATTGGACTGTTTCGAGTAGTGTCTGGAAGGTGTTTGATGAAATGCCTTTTATTTTTATTTTTTTTGGTATGAACTAAATTTGTTTATGGGATTTTGAGTGTGAGATTTCTGGGATCTCTTCAATTTAGGCATACAATTAAGGGTTTTCTGTTTCATTGCACTTGTTTCAGTTGTGATTCATGGAAGTACTCGGATATTGAAGGGGTCTGTCTGAATTTAATTAACTGGCTCTGGTACCGTGCATGGGTTCACCTAATTTGAACATTTCCAAACTTTGGGATTGGCTTTTCAATTCTAATTGTAGGTAGCAAATTAAATGTCCTTTATTGCTCTACAGTCCTCTCTAGACTTACACTTCCGTAGAAGGAAAGTTGGGGGCATGGTGAGGACGACGGGATGCCATTAAAGAAGATGTGCACATGGCAATTCCAGTGGGAATTTGCTGCCCACCATTAATTCCCACTGGAATATTCTTGTGCTTGGGACAAAGTCCATTCAGTGTTCTAAGTTGGGACTTTTTTGTTTTGTGTTAGCCTCCCTATGATTTAACATTTGAAATCTACTTTCACCGTCTCTAAACACTGTTTAGTTCCTAAGGTTAGAATATGTGAGTTTTTAAGTTTGACTTAGTGATTAACCTAGAGCAATTTTAGGATAATTATTTTTAAGAACTTGAGGATGAAGTTTAGGAGATCGGTTCTTTGTTTCGTTTTTATGGTACTGAAAAATGTGCTTTTCACGAAAGATATTGACAAAGTTTAAAATTTTCACTTTTTTTTATGAGATATCCACAGCTTGTAAGTAGCTTTATGGTTCACTTCAATTTTGTTCATTAGTATTGAAATAAGACTAACTTTAAATGTTTGTAGGATTTATGGTTCACTTCAATTTTGTTCATTAGTATTGAAATAAGACTAACTTTAAATGTCTGTAGGATCAAGCAATTGTTGATGGTTTTAGCCGTGAGTATAATAAGCAGCTTAATACCCCAAAAAGTAAAAGAATATTAAGATAAGGTTTGATGGTAATAAGGTTTCACTGGGTTTTCAGGAATTCGATTCCTCCTATGGTCCTGCCTGGCATTGCATTGTGGGAACTTGCTTTGGCTCCTATGTAACACATTCTCTAGGTGGCTTCTTGTATTTTTCAATAGATAAAGTTTACATCCTTCTCTTCAAAACGTCAGTCGAGCCCCTGACGCGTGCAACCTCGTTAAAAGATTGA

mRNA sequence

ATGGAGGGAGTGGAAATGGAGCTTGAGCGGCGTACTAAGTTTCTAAATGGCCTTATTTTGAAGAAGAAGGCGGTGGAGCAGCAAGACCAGCCCCATCCTCCTCTTAATGTTCGCGTCAGAGCCTCCGATATGTCATTTCCCTTGCAGAATCGCGCTTTTACCTCCGCTCGTCAACTCCTCGATTCCATGCCTGCCAAGCTCGATACCAAACGCCTCGCTCTCGCCCTTAAAAAGGAATTCGATTCCTCCTATGGTCCTGCCTGGCATTGCATTGTGGGAACTTGCTTTGGCTCCTATGTAACACATTCTCTAGGTGGCTTCTTGTATTTTTCAATAGATAAAGTTTACATCCTTCTCTTCAAAACGTCAGTCGAGCCCCTGACGCGTGCAACCTCGTTAAAAGATTGA

Coding sequence (CDS)

ATGGAGGGAGTGGAAATGGAGCTTGAGCGGCGTACTAAGTTTCTAAATGGCCTTATTTTGAAGAAGAAGGCGGTGGAGCAGCAAGACCAGCCCCATCCTCCTCTTAATGTTCGCGTCAGAGCCTCCGATATGTCATTTCCCTTGCAGAATCGCGCTTTTACCTCCGCTCGTCAACTCCTCGATTCCATGCCTGCCAAGCTCGATACCAAACGCCTCGCTCTCGCCCTTAAAAAGGAATTCGATTCCTCCTATGGTCCTGCCTGGCATTGCATTGTGGGAACTTGCTTTGGCTCCTATGTAACACATTCTCTAGGTGGCTTCTTGTATTTTTCAATAGATAAAGTTTACATCCTTCTCTTCAAAACGTCAGTCGAGCCCCTGACGCGTGCAACCTCGTTAAAAGATTGA

Protein sequence

MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLFKTSVEPLTRATSLKD

Homology

[Close]

BLAST of CmaCh04G021140 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 39  VRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGS 98
           ++ +DMS  +Q  A   A Q L+    + D   +A  +KKEFD  Y P WHCIVG  FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 99  YVTHSLGGFLYFSIDKVYILLFKT 123
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CmaCh04G021140 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 39  VRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGS 98
           ++ +DMS  +Q  A   A Q L+    + D   +A  +KKEFD  Y P WHCIVG  FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 99  YVTHSLGGFLYFSIDKVYILLFKT 123
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CmaCh04G021140 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-13
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 39  VRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGS 98
           ++ +DMS  +Q  A   A Q L+    + D   +A  +KKEFD  Y P WHCIVG  FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 99  YVTHSLGGFLYFSIDKVYILLFKT 123
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CmaCh04G021140 vs. ExPASy Swiss-Prot
Match: Q3MHR3 (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 39  VRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGS 98
           ++ +DMS  +Q  A   A Q ++    + D   +A  +KKEFD  Y P WHCIVG  FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 99  YVTHSLGGFLYFSIDKVYILLFKT 123
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CmaCh04G021140 vs. ExPASy Swiss-Prot
Match: Q96FJ2 (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 39  VRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGS 98
           ++ +DMS  +Q  A   A Q ++    + D   +A  +KKEFD  Y P WHCIVG  FGS
Sbjct: 8   IKNADMSEDMQQDAVDCATQAMEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 99  YVTHSLGGFLYFSIDKVYILLFKT 123
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of CmaCh04G021140 vs. ExPASy TrEMBL
Match: A0A6J1JTB7 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111487659 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.3e-69
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL
Sbjct: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF
Sbjct: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KTSVEPLTRATSLKD
Sbjct: 121 KTSVEPLTRATSLKD 135

[Close]

BLAST of CmaCh04G021140 vs. ExPASy TrEMBL
Match: A0A6J1E6W8 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111431264 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVEMELERRTKFLNGLILKKKAVE Q+QPHPPLNVRVRASDMSFPLQNRAFTSARQLL
Sbjct: 1   MEGVEMELERRTKFLNGLILKKKAVELQEQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKV+ILLF
Sbjct: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVHILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KTSVEPL+RATSLKD
Sbjct: 121 KTSVEPLSRATSLKD 135

[Close]

BLAST of CmaCh04G021140 vs. ExPASy TrEMBL
Match: A0A0A0KPF8 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.8e-56
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           M+G EMELERR+KFLNGLILKKKA EQQ+Q    LNVRVRASDM+FPLQNRAF+ AR+LL
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQ-RDRLNVRVRASDMAFPLQNRAFSCARELL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMP KLD+KRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKVYILLF
Sbjct: 61  DSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KT+VEPL+R  SLKD
Sbjct: 121 KTAVEPLSRGASLKD 134

[Close]

BLAST of CmaCh04G021140 vs. ExPASy TrEMBL
Match: A0A1S3CSY6 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 8.8e-56
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           M+G EMELERR+KFLNGLILKKKA EQQ+Q    LNVRVRASDM+FPLQNRAF+ AR+LL
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQ-RDRLNVRVRASDMAFPLQNRAFSCARELL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMP KLD+KRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKVYILLF
Sbjct: 61  DSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KT+VEPL+R  SLKD
Sbjct: 121 KTAVEPLSRGASLKD 134

[Close]

BLAST of CmaCh04G021140 vs. ExPASy TrEMBL
Match: A0A6J1CWZ8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.1e-55
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEG EMELERR+KFLNGLI KKKAVEQQ++    LN+RVRASDM FPLQNRAF+ AR+LL
Sbjct: 1   MEGAEMELERRSKFLNGLIQKKKAVEQQEE-RDRLNIRVRASDMPFPLQNRAFSCARELL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMP KLD+KR ALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKVYILLF
Sbjct: 61  DSMPGKLDSKRFALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KT+VEPL+R TSLKD
Sbjct: 121 KTAVEPLSRGTSLKD 134

[Close]

BLAST of CmaCh04G021140 vs. NCBI nr
Match: XP_022990909.1 (dynein light chain 2, cytoplasmic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL
Sbjct: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF
Sbjct: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KTSVEPLTRATSLKD
Sbjct: 121 KTSVEPLTRATSLKD 135

[Close]

BLAST of CmaCh04G021140 vs. NCBI nr
Match: XP_023532540.1 (dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 1.8e-66
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL
Sbjct: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKV+ILLF
Sbjct: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVHILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KTSVEPL+RATSLKD
Sbjct: 121 KTSVEPLSRATSLKD 135

[Close]

BLAST of CmaCh04G021140 vs. NCBI nr
Match: XP_022923609.1 (dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVEMELERRTKFLNGLILKKKAVE Q+QPHPPLNVRVRASDMSFPLQNRAFTSARQLL
Sbjct: 1   MEGVEMELERRTKFLNGLILKKKAVELQEQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKV+ILLF
Sbjct: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVHILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KTSVEPL+RATSLKD
Sbjct: 121 KTSVEPLSRATSLKD 135

[Close]

BLAST of CmaCh04G021140 vs. NCBI nr
Match: KAG6601867.1 (Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032568.1 Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVEMELERRTKFLNGLILKKKA EQQ+QPHPPLNVRVRASDMSFPLQNRAFTSARQLL
Sbjct: 1   MEGVEMELERRTKFLNGLILKKKAGEQQEQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKV+ILLF
Sbjct: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVHILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KTSVEPL+RATSLKD
Sbjct: 121 KTSVEPLSRATSLKD 135

[Close]

BLAST of CmaCh04G021140 vs. NCBI nr
Match: XP_004150121.1 (dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo] >KGN51478.1 hypothetical protein Csa_008341 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 1.8e-55
Identity = 115/135 (85.19%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           M+G EMELERR+KFLNGLILKKKA EQQ+Q    LNVRVRASDM+FPLQNRAF+ AR+LL
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQ-RDRLNVRVRASDMAFPLQNRAFSCARELL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           DSMP KLD+KRLALALKKEFDSSYGPAWHCIVGT FGSYVTHSLGGFLYFSIDKVYILLF
Sbjct: 61  DSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLF 120

Query: 121 KTSVEPLTRATSLKD 136
           KT+VEPL+R  SLKD
Sbjct: 121 KTAVEPLSRGASLKD 134

[Close]

BLAST of CmaCh04G021140 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-48
Identity = 95/127 (74.80%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 1   MEGVEMELERRTKFLNGLILKKKAVEQQDQPHPPLNVRVRASDMSFPLQNRAFTSARQLL 60
           MEGVE+ELERR+KFLN LI KKKA EQQDQ     NVRVRASDM  P QNRAF+ +R++L
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQ-KDEFNVRVRASDMPLPQQNRAFSLSREIL 60

Query: 61  DSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLF 120
           ++ P K D KRLA ALKK+FDS+YGPAWHCIVGT FGSYVTHS GGFLYF IDKVY+LLF
Sbjct: 61  NATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLF 120

Query: 121 KTSVEPL 128
           KT+VEPL
Sbjct: 121 KTAVEPL 126

[Close]

BLAST of CmaCh04G021140 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-25
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 35  LNVRVRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGT 94
           L VR+ A+DM   +Q  AF  AR  LDS+  K  +K +A  LKKEFD  YGPAWHCIVG+
Sbjct: 115 LTVRILAADMPGFMQAHAFRCARMTLDSL-EKFSSKHMAFNLKKEFDKGYGPAWHCIVGS 174

Query: 95  CFGSYVTHSLGGFLYFSIDKVYILLFKTSVEP 127
            FGS+VTHS G F+YFS+DK+Y+LLFKT V P
Sbjct: 175 SFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRP 205

[Close]

BLAST of CmaCh04G021140 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-13
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 39  VRASDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGS 98
           V  SDM   +Q +A   A Q LD      D K +A  +KKEFD  YG  W C+VG+ FG 
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALDLFDV-FDCKSIAGHIKKEFDERYGSGWQCVVGSNFGC 67

Query: 99  YVTHSLGGFLYFSIDKVYILLFKTSVEP 127
           + THS G F+YF ++ +  L+FK +  P
Sbjct: 68  FFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of CmaCh04G021140 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.1e-13
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 42  SDMSFPLQNRAFTSARQLLDSMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVT 101
           +DM   ++  A + A + LD       T ++A  +KKEFD SYG  W CIVGT FGS+VT
Sbjct: 11  TDMKQTMKEDALSLASKALDCFDVTEPT-QIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 70

Query: 102 HSLGGFLYFSIDKVYILLFKTSV 125
           H  G F++FS+  + ILLFK SV
Sbjct: 71  HCSGCFIHFSVGSLTILLFKGSV 92

[Close]

BLAST of CmaCh04G021140 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-13
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 10  RRTKFLNG------LILKKKAVEQQDQPHPPLNVR--VRASDMSFPLQNRAFTSARQLLD 69
           RR K +NG      ++  +++   + +  PP   R  ++++DM   +Q  A   A    +
Sbjct: 5   RRKKSVNGGAPAQTILDDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFE 64

Query: 70  SMPAKLDTKRLALALKKEFDSSYGPAWHCIVGTCFGSYVTHSLGGFLYFSIDKVYILLFK 123
               + D   +A  +KKEFD  +G  WHCIVG  FGSYVTH    F+YF +D+  +LLFK
Sbjct: 65  KYSVEKD---IAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK 122

The following BLAST results are available for this feature:

BLAST of CmaCh04G021140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q22799	5.2e-13	46.43	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	6.8e-13	46.43	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
O96860	6.8e-13	46.43	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q3MHR3	1.2e-12	45.24	Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1	[more]
Q96FJ2	1.2e-12	45.24	Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1	[more]

BLAST of CmaCh04G021140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTB7	5.3e-69	100.00	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111487659 PE=3 SV=1	[more]
A0A6J1E6W8	1.6e-65	96.30	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111431264 PE=3 SV=1	[more]
A0A0A0KPF8	8.8e-56	85.19	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1	[more]
A0A1S3CSY6	8.8e-56	85.19	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1	[more]
A0A6J1CWZ8	1.1e-55	84.44	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1	[more]

BLAST of CmaCh04G021140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990909.1	1.1e-68	100.00	dynein light chain 2, cytoplasmic-like isoform X1 [Cucurbita maxima]	[more]
XP_023532540.1	1.8e-66	97.78	dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022923609.1	3.3e-65	96.30	dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita moschata]	[more]
KAG6601867.1	3.3e-65	96.30	Dynein light chain 1, cytoplasmic, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004150121.1	1.8e-55	85.19	dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: d...	[more]

BLAST of CmaCh04G021140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23220.1	2.3e-48	74.80	Dynein light chain type 1 family protein	[more]
AT5G20110.1	2.7e-25	59.78	Dynein light chain type 1 family protein	[more]
AT1G52240.2	3.1e-13	42.05	RHO guanyl-nucleotide exchange factor 11	[more]
AT4G27360.1	3.1e-13	46.99	Dynein light chain type 1 family protein	[more]
AT4G15930.1	7.0e-13	34.71	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 32..122 e-value: 1.1E-37 score: 141.2
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 37..122 e-value: 1.2E-27 score: 96.1
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..128
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 25..123 e-value: 5.1E-31 score: 108.5
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 30..122
None	No IPR available	PANTHER	PTHR11886:SF39	DYNEIN LIGHT CHAIN	coord: 1..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G021140.1	CmaCh04G021140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding