CmaCh04G021100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G021100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ubiquitin-conjugating enzyme E2 variant 1A-like
Location	Cma_Chr04: 14743638 .. 14745745 (+)
RNA-Seq Expression	CmaCh04G021100
Synteny	CmaCh04G021100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACGAGGCCGCGAAGGTAGTCGGTGAGTCTTTGAAACCCCAATCTATCCGATTCCACCATTCGATAATTTCTATCTTGTTAGGTTTTTTCTTCTTTCTGATGCGAATTCTGATTCTGCAACGCCTTTTTTTTTTTTGTTTGTTCTTTTTCGGGATGTTGGAGTTTGTTCTGTTCGGGAATCAACTTTTATTATGATTTTTCACTCTCTCGCCAACGTAATTTCCAAATATTGTGTTTGGGATATGCTTGGATTTTTTTGTTTACTCCAAATTGGAAGAGTGTGGTGATATGGATGGATGAGACTATTTTCGTTTCATTTTCTAATTGAAGTAATCATTTGGTTCGCTTTATCTTATGTTGTCTGCTTTACATTGGATAGATACATTTTGAAAATGAATCTATTTGTTTAGTTTCCGTTGCTATCTTCATGTTATTTCTTCAACAATCTGTAATTTGTTCTTCGAAAGATTGTGGTGGTTTGAGGACAGTAAATGACGATGTATGAGAACTCGTCATACATCTTAATGATTTTTTTTCACCTTGTTCACAGGAGTTTATAATTGTTGCACCATGAGATCTAATTTTGTTTATTTGTTATTATCATTTTGCAGTTCCCCGAAACTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACAATTATAGGGCCACCTAATGTAAGTTCATTTTTCATCCATTTTGTTCATTGCTTATTGTCTCTGATGACATCTTGGTCGACTGCTATAAATCTTGATATGGATAGTTTCAAAAAATGATGGAAATATCATACTCCACAGTATCAATTGTAGGAGTTCACAGAAATGTAAACTTTGTTAGCCTTTGGGTGTTGAAAGATTTCCAACATACTGTTTTGGCTCATCACCCCTTCAAACATTTTAAAGCTTTGCTCGGAAAATGGCATTAGCGGTTTTTTGGATTTGGAAAGAGCAAAATCAGCAGGTCTTCTTGGACAAAGATCAATCTCATGCTAGGATCTTTGACCTTGTTGTTTACCTTGTTATTTCTTGGTGTAAATTGTCTTCTACTTTGCTTCCTATGGCTTTTCCTCCGTCCTAACAAATTGGGAAAATCTTTTGTAATCATCACAAATTAACGTCCCTTTTGTAGATTTCATACATAAAAGAAATTGTTCCTTATATATATAAAAAAAAAGTATACATGATCTTTTTGGACTTGATTTATGTCCTTGGTATTTTGAAAATGATCTAAATTGAGTTTTTCCAGAGTACATTATTCTCTGATCTTTGTGCTCCCTCTATTTATTATTATTATTATTATTTTTTTTTTTTTGTAGTTTGTAAATTCTATCTTCAGTCTCTGCCTCCTAAAATCTCCTAAAAAGTGCACAGAGGGTCTGTGATGCCAGTTTGATGTACTTAATTTTTGGGAAGTGTAGTTACATAACTAACTTTCTAATTGTCTTTACCTTGAAAATTCATCACAAAAGAAAATTGATATTTTTGAGTACCTTCCTCATGTTGATGAAAATGAGCATTGCGGTTTCATTGCGTTGGTGGAAGTTGATGTATTCTTCTTTATTATTGTTGTTGTTGGGGAGAGCACGAATAGAATTGTAAATTGAATCGTTGCTTTCTTGCTTTTCAGACTGTTCATGAAGGACGGATTTATCAACTCAAGCTATTCTGTGGACAGGATTATCCTGATAATCCTCCCAGCGTGAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGTGTGGTATGTGATGATTTTGTGAAACGCTTGCTGCATTGTGACGAAAATAAATTAACAGCTTAGCTGAATGACTAGGTGGAACCAAGCCTTTTTCCCATGCTTTCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAGTTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTGAGTTTATTCATTTATTCACTTCTCATTATGGACAGCACACTCCTCTCGTTAATATATACAGCAGATTGAATTGA

mRNA sequence

ATGGGTGACGAGGCCGCGAAGGTAGTCGTTCCCCGAAACTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACAATTATAGGGCCACCTAATACTGTTCATGAAGGACGGATTTATCAACTCAAGCTATTCTGTGGACAGGATTATCCTGATAATCCTCCCAGCGTGAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGTGTGGTGGAACCAAGCCTTTTTCCCATGCTTTCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAGTTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTGAGTTTATTCATTTATTCACTTCTCATTATGGACAGCACACTCCTCTCGTTAATATATACAGCAGATTGAATTGA

Coding sequence (CDS)

ATGGGTGACGAGGCCGCGAAGGTAGTCGTTCCCCGAAACTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACGGGAACAATTATAGGGCCACCTAATACTGTTCATGAAGGACGGATTTATCAACTCAAGCTATTCTGTGGACAGGATTATCCTGATAATCCTCCCAGCGTGAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGTGTGGTGGAACCAAGCCTTTTTCCCATGCTTTCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAGTTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTGAGTTTATTCATTTATTCACTTCTCATTATGGACAGCACACTCCTCTCGTTAATATATACAGCAGATTGAATTGA

Protein sequence

MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN

Homology

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BLAST of CmaCh04G021100 vs. ExPASy Swiss-Prot
Match: Q93YP0 (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.9e-66
Identity = 114/141 (80.85%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           M  E AKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYM SWTGTI+GPPNT +E
Sbjct: 1   MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           G+I+QLKLFCG++YP++PP+VRFQTRINM CVNPETGVVEPSLFPML+NW+RE+TMEDIL
Sbjct: 61  GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           ++LKKEM +  NR+L+QP EG
Sbjct: 121 VKLKKEMMTSHNRKLAQPPEG 141

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BLAST of CmaCh04G021100 vs. ExPASy Swiss-Prot
Match: Q9CAB6 (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-63
Identity = 112/141 (79.43%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MG E  KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           G+I+QLKLFCG+DYP++PP+VRFQ+RINM CVNPE GVV+PS FPMLSNW+RE TMED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           +QLKKEM S QNR+L+QP EG
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEG 141

[Close]

BLAST of CmaCh04G021100 vs. ExPASy Swiss-Prot
Match: Q9SVD7 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.3e-61
Identity = 107/141 (75.89%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           +G   + VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM SWTGTIIGP NTVHE
Sbjct: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFC +DYP+ PP+VRF +R+NM CVN ETGVV+P  F +L+NWQRE+TMEDIL
Sbjct: 63  GRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDIL 122

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           +QLKKEM++  NR+L QP EG
Sbjct: 123 VQLKKEMSTSHNRKLVQPPEG 143

[Close]

BLAST of CmaCh04G021100 vs. ExPASy Swiss-Prot
Match: Q9SJ44 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.6e-59
Identity = 106/138 (76.81%), Postives = 119/138 (86.23%), Query Frame = 0


Query: 6   AKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQ 65
           + VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM SWTGTIIGP NTVHEGRIYQ
Sbjct: 7   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 66

Query: 66  LKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDILMQLKK 125
           LKLFC +DYP+ PP+VRF +RINMTCVN +TGVV+   F +L+NWQR++TMEDIL QLKK
Sbjct: 67  LKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKK 126

Query: 126 EMTSPQNRRLSQPSEGEF 144
           EM +  NR+L QP EG F
Sbjct: 127 EMAASHNRKLVQPPEGTF 144

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BLAST of CmaCh04G021100 vs. ExPASy Swiss-Prot
Match: Q54D06 (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-42
Identity = 74/132 (56.06%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 10  VPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLF 69
           +PRNF LLEELE GEK  GDGT+SYG++  DDI ++SW GTIIGP NT  + R Y LKL+
Sbjct: 4   IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLY 63

Query: 70  CGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDILMQLKKEMTS 129
           C +DYP+ PP+VRF T+IN+ CVN + GVV+P   P+LSNW  ++ +++IL +L++EM+S
Sbjct: 64  CDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSS 123

Query: 130 PQNRRLSQPSEG 142
             N++L QP EG
Sbjct: 124 SSNKKLVQPPEG 135

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BLAST of CmaCh04G021100 vs. ExPASy TrEMBL
Match: A0A6J1JNZ0 (ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487038 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 6.5e-93
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN 166
           MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN 165

[Close]

BLAST of CmaCh04G021100 vs. ExPASy TrEMBL
Match: A0A6J1JLS9 (ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487038 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEG 141

[Close]

BLAST of CmaCh04G021100 vs. ExPASy TrEMBL
Match: A0A6J1HM74 (ubiquitin-conjugating enzyme E2 variant 1B isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464879 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.0e-77
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEA KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEG 141

[Close]

BLAST of CmaCh04G021100 vs. ExPASy TrEMBL
Match: A0A5D3C2X2 (Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3042G00070 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.5e-77
Identity = 138/141 (97.87%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPP+VRFQTR+NMTCVNPETGVVEPSLFPML+NWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEG 141

[Close]

BLAST of CmaCh04G021100 vs. ExPASy TrEMBL
Match: A0A1S4E671 (uncharacterized protein LOC103483035 OS=Cucumis melo OX=3656 GN=LOC103483035 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.5e-77
Identity = 138/141 (97.87%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 565 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 624

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPP+VRFQTR+NMTCVNPETGVVEPSLFPML+NWQREHTMEDIL
Sbjct: 625 GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 684

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 685 MQLKKEMTSPQNRRLSQPSEG 705

[Close]

BLAST of CmaCh04G021100 vs. NCBI nr
Match: XP_022990018.1 (ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 [Cucurbita maxima] >XP_022990019.1 ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 [Cucurbita maxima] >XP_022990020.1 ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 349.7 bits (896), Expect = 1.3e-92
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN 166
           MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN 165

[Close]

BLAST of CmaCh04G021100 vs. NCBI nr
Match: XP_023540949.1 (ubiquitin-conjugating enzyme E2 variant 1A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540958.1 ubiquitin-conjugating enzyme E2 variant 1A isoform X1 [Cucurbita pepo subsp. pepo] >XP_023540965.1 ubiquitin-conjugating enzyme E2 variant 1A isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.9 bits (886), Expect = 1.9e-91
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEA KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVNIYSRLN 166
           MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLV+IYSRLN
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGEFIHLFTSHYGQHTPLVSIYSRLN 165

[Close]

BLAST of CmaCh04G021100 vs. NCBI nr
Match: XP_022990021.1 (ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 298.9 bits (764), Expect = 2.7e-77
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEG 141

[Close]

BLAST of CmaCh04G021100 vs. NCBI nr
Match: XP_022964925.1 (ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_022964933.1 ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_022964940.1 ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_023540973.1 ubiquitin-conjugating enzyme E2 variant 1B isoform X2 [Cucurbita pepo subsp. pepo] >KAG7032565.1 Ubiquitin-conjugating enzyme E2 variant 1B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEA KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEG 141

[Close]

BLAST of CmaCh04G021100 vs. NCBI nr
Match: KAG6601851.1 (Ubiquitin-conjugating enzyme E2 variant 1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEA KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           MQLKKEMTSPQNRRLSQPSEG
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEG 141

[Close]

BLAST of CmaCh04G021100 vs. TAIR 10
Match: AT1G23260.1 (MMS ZWEI homologue 1 )

HSP 1 Score: 252.7 bits (644), Expect = 2.1e-67
Identity = 114/141 (80.85%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           M  E AKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYM SWTGTI+GPPNT +E
Sbjct: 1   MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           G+I+QLKLFCG++YP++PP+VRFQTRINM CVNPETGVVEPSLFPML+NW+RE+TMEDIL
Sbjct: 61  GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           ++LKKEM +  NR+L+QP EG
Sbjct: 121 VKLKKEMMTSHNRKLAQPPEG 141

[Close]

BLAST of CmaCh04G021100 vs. TAIR 10
Match: AT1G70660.2 (MMS ZWEI homologue 2 )

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-65
Identity = 115/148 (77.70%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MG E  KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           G+I+QLKLFCG+DYP++PP+VRFQ+RINM CVNPE GVV+PS FPMLSNW+RE TMED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG--EFIHL 147
           +QLKKEM S QNR+L+QP EG  EFI +
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEGNEEFIRI 148

[Close]

BLAST of CmaCh04G021100 vs. TAIR 10
Match: AT1G70660.1 (MMS ZWEI homologue 2 )

HSP 1 Score: 244.2 bits (622), Expect = 7.3e-65
Identity = 112/141 (79.43%), Postives = 127/141 (90.07%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MG E  KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           G+I+QLKLFCG+DYP++PP+VRFQ+RINM CVNPE GVV+PS FPMLSNW+RE TMED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           +QLKKEM S QNR+L+QP EG
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEG 141

[Close]

BLAST of CmaCh04G021100 vs. TAIR 10
Match: AT3G52560.1 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-62
Identity = 107/141 (75.89%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           +G   + VVVPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM SWTGTIIGP NTVHE
Sbjct: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62

Query: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120
           GRIYQLKLFC +DYP+ PP+VRF +R+NM CVN ETGVV+P  F +L+NWQRE+TMEDIL
Sbjct: 63  GRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDIL 122

Query: 121 MQLKKEMTSPQNRRLSQPSEG 142
           +QLKKEM++  NR+L QP EG
Sbjct: 123 VQLKKEMSTSHNRKLVQPPEG 143

[Close]

BLAST of CmaCh04G021100 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 234.6 bits (597), Expect = 5.8e-62
Identity = 106/135 (78.52%), Postives = 124/135 (91.85%), Query Frame = 0


Query: 7   KVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQL 66
           +++VPRNFRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +EG+I+QL
Sbjct: 443 ELLVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQL 502

Query: 67  KLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDILMQLKKE 126
           KLFCG+DYP++PP+VRFQ+RINM CVNPE GVV+PS FPMLSNW+RE TMED+L+QLKKE
Sbjct: 503 KLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKE 562

Query: 127 MTSPQNRRLSQPSEG 142
           M S QNR+L+QP EG
Sbjct: 563 MMSSQNRKLAQPLEG 577

The following BLAST results are available for this feature:

BLAST of CmaCh04G021100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YP0	2.9e-66	80.85	Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9CAB6	1.0e-63	79.43	Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SVD7	6.3e-61	75.89	Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SJ44	2.6e-59	76.81	Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q54D06	3.8e-42	56.06	Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=...	[more]

BLAST of CmaCh04G021100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNZ0	6.5e-93	100.00	ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1JLS9	1.3e-77	100.00	ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1HM74	5.0e-77	99.29	ubiquitin-conjugating enzyme E2 variant 1B isoform X1 OS=Cucurbita moschata OX=3...	[more]
A0A5D3C2X2	8.5e-77	97.87	Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4E671	8.5e-77	97.87	uncharacterized protein LOC103483035 OS=Cucumis melo OX=3656 GN=LOC103483035 PE=...	[more]

BLAST of CmaCh04G021100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022990018.1	1.3e-92	100.00	ubiquitin-conjugating enzyme E2 variant 1A-like isoform X1 [Cucurbita maxima] >X...	[more]
XP_023540949.1	1.9e-91	98.79	ubiquitin-conjugating enzyme E2 variant 1A isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022990021.1	2.7e-77	100.00	ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 [Cucurbita maxima]	[more]
XP_022964925.1	1.0e-76	99.29	ubiquitin-conjugating enzyme E2 variant 1B isoform X1 [Cucurbita moschata] >XP_0...	[more]
KAG6601851.1	1.0e-76	99.29	Ubiquitin-conjugating enzyme E2 variant 1A, partial [Cucurbita argyrosperma subs...	[more]

BLAST of CmaCh04G021100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23260.1	2.1e-67	80.85	MMS ZWEI homologue 1	[more]
AT1G70660.2	2.5e-65	77.70	MMS ZWEI homologue 2	[more]
AT1G70660.1	7.3e-65	79.43	MMS ZWEI homologue 2	[more]
AT3G52560.1	4.5e-62	75.89	ubiquitin E2 variant 1D-4	[more]
AT1G70650.2	5.8e-62	78.52	Ran BP2/NZF zinc finger-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 14..156 e-value: 6.2E-13 score: 59.0
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 8..145
None	No IPR available	PANTHER	PTHR24068:SF344	UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE	coord: 8..145
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 41..134 e-value: 2.9E-16 score: 59.4
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 11..165 score: 33.681286
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 2..144 e-value: 6.1E-44 score: 151.1
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 9..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G021100.1	CmaCh04G021100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0070534	protein K63-linked ubiquitination
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding