CmaCh04G020890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	homeobox-leucine zipper protein HOX3-like
Location	Cma_Chr04: 14499939 .. 14501662 (+)
RNA-Seq Expression	CmaCh04G020890
Synteny	CmaCh04G020890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTTTGCCCATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCCGGCTCCTCCCCGCCTCGTCCTCCTTTCGGTACCCTCTTCAATTATTATAACATCATTGTTTGAATCTCCAATTTTATATTTTTTGTGTATTAGATTGGGAATGATTAAATTTTGGTTTGCATGTTGATTAAATGGAAAGTGGGTGGTTGTGCAGTGCGAGAATTTGACATGAACCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAGAGCTGCATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAGTAACCAAAATCATCTCAAAATTAATGATCTTTGAGTTTCTTAATCATGTATTTTATAAATAAAATTGATTATTTTTTATTTATTTTACAGAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGTTTGTATTTTTATTCTCTCCTATATTCATTTCTTAGCTCAACAAAATGGTTTTTTTATTATTATTATTTTTTTAATCTAAGTTTCCTTTTAAAAATAATCGATCCGAGCGTTTTACGAAGTTAAATAATTTGTATTAGATGCGTTGAATTGTTAATCTGGATTAAGGAAATTTGTGTTGGGATGTAGAGATATTTAATCTCGATTTTGAAAGTTTGTGTTCGAAGTGTAAAGTTTTTAACGTCGAGGTCCGAGTTTGAAGTTTGTGTTTATATGAATATTTTTTTTATATCTTTTCAAATGTTAAATAAAACAAGAATGTTTTTAATTATTTTTATTGTTTTTTAAAATGTAAATGGAAATATCATAATTATAAAAAATAAACATGAAATGAGGCCTTTTAGCCACTTTAACCCGACCTAAATTAGGGTTAAACACGTTTTAAGTTTGTTAGAGTTTCGTGAATCAAACATCTCTTAAATTCAATTTAAATCTCGTGGATCTTTAGAGACACTAATATTTAACTATTAAACTATCTTTGATTATATCTCTCAAAACTTAACTAAATTTTGGATATATCTTTTTTTTCGTGAATAATGGAACCATTAATCTTTTAAAATAATTATGTTATACACCGAAATTAACAACTTTTAAATGTATACTATATATATATATTTGTTGGCTTAATAAGAAAGGAAAATTAATTACCTAATGTGCATGGGCCTTAATCAATGCATTTGCTGGCCTAAATGTTTGATAGTTATCATGTTAATTGAATTACATAAATACCTATACCTATAAAGACAAGAATTAGTATTTGAGAGGATTTTTTTTGTGTAATAATAATAATAATAATAATATTGTAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGTCTCCGGCAGGAACTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACCGCGGTCGTCTCAGGTCACGGCCGACAGCCACCCCTCCCGATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGTGTAAGTGCATCCACTATAACATACGGTAAAGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

mRNA sequence

ATGGCAATTTTGCCCATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCCGGCTCCTCCCCGCCTCGTCCTCCTTTCGTGCGAGAATTTGACATGAACCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAGAGCTGCATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGTCTCCGGCAGGAACTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACCGCGGTCGTCTCAGGTCACGGCCGACAGCCACCCCTCCCGATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGTGTAAGTGCATCCACTATAACATACGGTAAAGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

Coding sequence (CDS)

ATGGCAATTTTGCCCATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCCGGCTCCTCCCCGCCTCGTCCTCCTTTCGTGCGAGAATTTGACATGAACCGGTTGCCGGAGGTGGGAGACGGCGAGGAGGAGTGGGCGGAGGAAGAAGAAGAGAGCTGCATTAATGACTGTAAGCCAAGGAAAAAGCTTCGTCTATCAAAAGATCAGTCTCGGCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCAAAGCAGAAGGAAGCTTTGGCTATGGAGTTGAAGCTGAAGCCAAGGCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCCAGGAGCAAGCTGAAGCAAACTGAGAGGGAATGTGAGTATTTGAAGAGATGGTTTGGATCATTGACAGAGCAAAACCGCCGTCTCCGGCAGGAACTGGAGGAGCTGAGAGCCATGAAGGTTGCTCCGACCGCGGTCGTCTCAGGTCACGGCCGACAGCCACCCCTCCCGATTTCTGCAATAACCATGTGTCCCCGATGTGAGCGTGTAAGTGCATCCACTATAACATACGGTAAAGGTGCGAGCAGCGCCAGCACAATGCCACCGGAAGCATTTCTGTCCGCCCTCAAACTGCGGCAGCCGTCGTGA

Protein sequence

MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS

Homology

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BLAST of CmaCh04G020890 vs. ExPASy Swiss-Prot
Match: Q8S9N6 (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana OX=3702 GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-51
Identity = 124/213 (58.22%), Postives = 144/213 (67.61%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVRE----------FDMNRLPEVGDGEEEWAEEE 60
           MAILP NSSNLDL+IS+PG S    P   E           DMNRLP   DG++E    +
Sbjct: 74  MAILPENSSNLDLTISVPGFS--SSPLSDEGSGGGRDQLRLDMNRLPSSEDGDDEEFSHD 133

Query: 61  EESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNR 120
           + S      PRKKLRL+++QSRLLE+SFR NHTLNPKQKE LA  L L+PRQ+EVWFQNR
Sbjct: 134 DGS----APPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNR 193

Query: 121 RARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPIS 180
           RARSKLKQTE ECEYLKRWFGSLTE+N RL +E+EELRAMKV PT V S          S
Sbjct: 194 RARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNSA---------S 253

Query: 181 AITMCPRCERV--SASTITYGKGASSASTMPPE 202
           ++TMCPRCERV  +AS         +  T PP+
Sbjct: 254 SLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQ 271

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BLAST of CmaCh04G020890 vs. ExPASy Swiss-Prot
Match: Q9XH38 (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica OX=39946 GN=HOX3 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-51
Identity = 112/163 (68.71%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 28  VREFDMNRLPEVGDGEEEW-----AEEEEESCINDCKPRKKLRLSKDQSRLLEESFRLNH 87
           +R+ D+N+ P  G  EEE+      E+EEE  +      KKLRLSK+QSRLLEESFRLNH
Sbjct: 40  MRDLDINQ-PASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNH 99

Query: 88  TLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQ 147
           TL PKQKEALA++LKL+PRQVEVWFQNRRAR+KLKQTE ECEYLKR FGSLTE+NRRL++
Sbjct: 100 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQR 159

Query: 148 ELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCERVSAST 186
           E+EELRAM+VAP  V+S H RQ PLP SA+TMCPRCER++A+T
Sbjct: 160 EVEELRAMRVAPPTVLSPHTRQ-PLPASALTMCPRCERITAAT 200

[Close]

BLAST of CmaCh04G020890 vs. ExPASy Swiss-Prot
Match: Q0JKX1 (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX3 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.8e-51
Identity = 112/163 (68.71%), Postives = 134/163 (82.21%), Query Frame = 0


Query: 28  VREFDMNRLPEVGDGEEEW-----AEEEEESCINDCKPRKKLRLSKDQSRLLEESFRLNH 87
           +R+ D+N+ P  G  EEE+      E+EEE  +      KKLRLSK+QSRLLEESFRLNH
Sbjct: 40  MRDLDINQ-PASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNH 99

Query: 88  TLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQ 147
           TL PKQKEALA++LKL+PRQVEVWFQNRRAR+KLKQTE ECEYLKR FGSLTE+NRRL++
Sbjct: 100 TLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQR 159

Query: 148 ELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCERVSAST 186
           E+EELRAM+VAP  V+S H RQ PLP SA+TMCPRCER++A+T
Sbjct: 160 EVEELRAMRVAPPTVLSPHTRQ-PLPASALTMCPRCERITAAT 200

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BLAST of CmaCh04G020890 vs. ExPASy Swiss-Prot
Match: Q8GXM7 (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana OX=3702 GN=ATHB-X PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.1e-41
Identity = 112/214 (52.34%), Postives = 137/214 (64.02%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPF-----VREFDMNRLPEVGDGEEEW-----AEEE 60
           MA+ P NSS+LDL+IS+P  S P P       +R+FD+N+ P+  + + EW         
Sbjct: 1   MALSP-NSSSLDLTISIPSFS-PSPSLGDHHGMRDFDINQTPKT-EEDREWMIGATPHVN 60

Query: 61  EESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNR 120
           E+   +  + RKKLRL+K+QS LLEESF  NHTL PKQK+ LA  LKL  RQVEVWFQNR
Sbjct: 61  EDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNR 120

Query: 121 RARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPIS 180
           RARSKLK TE ECEYLKRWFGSL EQNRRL+ E+EELRA+K              P   S
Sbjct: 121 RARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK--------------PSSTS 180

Query: 181 AITMCPRCERVS------ASTITYGKGASSASTM 199
           A+TMCPRCERV+      ++ +  G   SS S M
Sbjct: 181 ALTMCPRCERVTDAVDNDSNAVQEGAVLSSRSRM 197

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BLAST of CmaCh04G020890 vs. ExPASy Swiss-Prot
Match: Q40691 (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica OX=39946 GN=HOX1 PE=1 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 3.8e-34
Identity = 89/184 (48.37%), Postives = 118/184 (64.13%), Query Frame = 0


Query: 18  PGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKPRKKLRLSKDQSRLLEES 77
           PG+S P             P         A ++E+S       RKKLRLSKDQ+ +LE++
Sbjct: 116 PGASSPNSTLSSLSGKRGAPSAATAAAAAASDDEDS---GGGSRKKLRLSKDQAAVLEDT 175

Query: 78  FRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTERECEYLKRWFGSLTEQN 137
           F+ ++TLNPKQK ALA +L LKPRQVEVWFQNRRAR+KLKQTE +CE LKR   +LT++N
Sbjct: 176 FKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTDEN 235

Query: 138 RRLRQELEELRAMKVAPTAVVSGH--GRQPPLPISAITMCPRCERVSASTITYGKGASSA 197
           RRL +EL+ELRA+K+A  A    H  G + P P + +TMCP CERV+++  T    + +A
Sbjct: 236 RRLHRELQELRALKLATAAAAPHHLYGARVP-PPTTLTMCPSCERVASAATTTRNNSGAA 295

Query: 198 STMP 200
              P
Sbjct: 296 PARP 295

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BLAST of CmaCh04G020890 vs. ExPASy TrEMBL
Match: A0A6J1JHC4 (homeobox-leucine zipper protein ATHB-17-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487015 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.6e-112
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60
           MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP
Sbjct: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60

Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE
Sbjct: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
           RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER
Sbjct: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180

Query: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           VSASTITYGKGASSASTMPPEAFLSALKLRQPS
Sbjct: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 213

[Close]

BLAST of CmaCh04G020890 vs. ExPASy TrEMBL
Match: A0A6J1JLP7 (homeobox-leucine zipper protein HOX3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487015 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.2e-110
Identity = 213/218 (97.71%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPF-----VREFDMNRLPEVGDGEEEWAEEEEESCI 60
           MAILPINSSNLDLSISMPGSSPPRPPF     VREFDMNRLPEVGDGEEEWAEEEEESCI
Sbjct: 1   MAILPINSSNLDLSISMPGSSPPRPPFVGGCAVREFDMNRLPEVGDGEEEWAEEEEESCI 60

Query: 61  NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 120
           NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK
Sbjct: 61  NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 120

Query: 121 LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC 180
           LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC
Sbjct: 121 LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC 180

Query: 181 PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS
Sbjct: 181 PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS 218

[Close]

BLAST of CmaCh04G020890 vs. ExPASy TrEMBL
Match: A0A6J1HI65 (homeobox-leucine zipper protein ATHB-17-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463804 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60
           MAI+PINSSNLDLSISMPGSSP RPPFVREFDMNRLPEVGDGEEEWAEEEEES INDCKP
Sbjct: 1   MAIIPINSSNLDLSISMPGSSPSRPPFVREFDMNRLPEVGDGEEEWAEEEEESYINDCKP 60

Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE
Sbjct: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
           RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVS HGRQPPLPISAITMCPRCER
Sbjct: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCER 180

Query: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           +SASTITYGKGASSAST+PPEAFLSALKLRQPS
Sbjct: 181 MSASTITYGKGASSASTLPPEAFLSALKLRQPS 213

[Close]

BLAST of CmaCh04G020890 vs. ExPASy TrEMBL
Match: A0A6J1HI55 (homeobox-leucine zipper protein HOX3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463804 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.8e-107
Identity = 207/218 (94.95%), Postives = 210/218 (96.33%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPF-----VREFDMNRLPEVGDGEEEWAEEEEESCI 60
           MAI+PINSSNLDLSISMPGSSP RPPF     VREFDMNRLPEVGDGEEEWAEEEEES I
Sbjct: 1   MAIIPINSSNLDLSISMPGSSPSRPPFVDGCAVREFDMNRLPEVGDGEEEWAEEEEESYI 60

Query: 61  NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 120
           NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK
Sbjct: 61  NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 120

Query: 121 LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC 180
           LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVS HGRQPPLPISAITMC
Sbjct: 121 LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMC 180

Query: 181 PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           PRCER+SASTITYGKGASSAST+PPEAFLSALKLRQPS
Sbjct: 181 PRCERMSASTITYGKGASSASTLPPEAFLSALKLRQPS 218

[Close]

BLAST of CmaCh04G020890 vs. ExPASy TrEMBL
Match: A0A6J1DFP4 (homeobox-leucine zipper protein HOX3-like OS=Momordica charantia OX=3673 GN=LOC111020071 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.4e-76
Identity = 163/225 (72.44%), Postives = 182/225 (80.89%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPG--SSPPRPPFVREFDMNRLPEVGDGEEEWA------EEEEE 60
           MA+ PINSS+L+LSISMPG  SSP RP F RE DMNR+P     EEEWA      EEEEE
Sbjct: 1   MAVSPINSSSLELSISMPGFASSPARPSFARELDMNRVPAGAVAEEEWAVALSTEEEEEE 60

Query: 61  SCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRA 120
           S  N  +PRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRA
Sbjct: 61  SSANGGRPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRA 120

Query: 121 RSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAI 180
           RSKLKQTE ECEYLKRWFG+LT+QNRRLR ELEELRA+KVAP A++S   RQP LP S +
Sbjct: 121 RSKLKQTEMECEYLKRWFGTLTDQNRRLRLELEELRAIKVAPPALISAPTRQPTLPASTV 180

Query: 181 TMCPRCERVSASTITYGKGASSA----STMPPEAFLSALKLRQPS 214
           TMCP CERV+A++I  GK A+ A    +TMP +A L+A KLR+PS
Sbjct: 181 TMCPHCERVTAASIISGKAAAPATAVTATMPSKALLTAHKLRRPS 225

[Close]

BLAST of CmaCh04G020890 vs. NCBI nr
Match: XP_022989987.1 (homeobox-leucine zipper protein ATHB-17-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 3.3e-112
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60
           MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP
Sbjct: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60

Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE
Sbjct: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
           RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER
Sbjct: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180

Query: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           VSASTITYGKGASSASTMPPEAFLSALKLRQPS
Sbjct: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 213

[Close]

BLAST of CmaCh04G020890 vs. NCBI nr
Match: XP_022989986.1 (homeobox-leucine zipper protein HOX3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110
Identity = 213/218 (97.71%), Postives = 213/218 (97.71%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPF-----VREFDMNRLPEVGDGEEEWAEEEEESCI 60
           MAILPINSSNLDLSISMPGSSPPRPPF     VREFDMNRLPEVGDGEEEWAEEEEESCI
Sbjct: 1   MAILPINSSNLDLSISMPGSSPPRPPFVGGCAVREFDMNRLPEVGDGEEEWAEEEEESCI 60

Query: 61  NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 120
           NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK
Sbjct: 61  NDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSK 120

Query: 121 LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC 180
           LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC
Sbjct: 121 LKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMC 180

Query: 181 PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS
Sbjct: 181 PRCERVSASTITYGKGASSASTMPPEAFLSALKLRQPS 218

[Close]

BLAST of CmaCh04G020890 vs. NCBI nr
Match: XP_022963500.1 (homeobox-leucine zipper protein ATHB-17-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 402.5 bits (1033), Expect = 2.2e-108
Identity = 207/213 (97.18%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60
           MAI+PINSSNLDLSISMPGSSP RPPFVREFDMNRLPEVGDGEEEWAEEEEES INDCKP
Sbjct: 1   MAIIPINSSNLDLSISMPGSSPSRPPFVREFDMNRLPEVGDGEEEWAEEEEESYINDCKP 60

Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE
Sbjct: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
           RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVS HGRQPPLPISAITMCPRCER
Sbjct: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCER 180

Query: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           +SASTITYGKGASSAST+PPEAFLSALKLRQPS
Sbjct: 181 MSASTITYGKGASSASTLPPEAFLSALKLRQPS 213

[Close]

BLAST of CmaCh04G020890 vs. NCBI nr
Match: XP_023520823.1 (homeobox-leucine zipper protein ATHB-17-like [Cucurbita pepo subsp. pepo] >XP_023520937.1 homeobox-leucine zipper protein ATHB-17-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520980.1 homeobox-leucine zipper protein ATHB-17-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 401.4 bits (1030), Expect = 5.0e-108
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60
           MAI+PINSSNLDLSISMPGSSP RPPFVREFDMNRLPEVGDGEEEWAEEEEES INDCKP
Sbjct: 1   MAIIPINSSNLDLSISMPGSSPSRPPFVREFDMNRLPEVGDGEEEWAEEEEESYINDCKP 60

Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE
Sbjct: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
           RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVS HGRQPPLPISAITMCPRCER
Sbjct: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCER 180

Query: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           +SASTITY KGASSASTMPPEAFLSALKLRQPS
Sbjct: 181 MSASTITYSKGASSASTMPPEAFLSALKLRQPS 213

[Close]

BLAST of CmaCh04G020890 vs. NCBI nr
Match: KAG7032540.1 (Homeobox-leucine zipper protein ATHB-17, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 401.4 bits (1030), Expect = 5.0e-108
Identity = 207/213 (97.18%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVREFDMNRLPEVGDGEEEWAEEEEESCINDCKP 60
           MAI+PINSSNLDLSISMPGSSP RPPFVREFDMNRLPEVGDGEEEWAEEEEES INDCKP
Sbjct: 1   MAIIPINSSNLDLSISMPGSSPSRPPFVREFDMNRLPEVGDGEEEWAEEEEESYINDCKP 60

Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALA ELKLKPRQVEVWFQNRRARSKLKQTE
Sbjct: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALATELKLKPRQVEVWFQNRRARSKLKQTE 120

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
           RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVS HGRQPPLPISAITMCPRCER
Sbjct: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSAHGRQPPLPISAITMCPRCER 180

Query: 181 VSASTITYGKGASSASTMPPEAFLSALKLRQPS 214
           +SASTITYGKGASSASTMPPEAFLSALKLRQPS
Sbjct: 181 MSASTITYGKGASSASTMPPEAFLSALKLRQPS 213

[Close]

BLAST of CmaCh04G020890 vs. TAIR 10
Match: AT2G01430.1 (homeobox-leucine zipper protein 17 )

HSP 1 Score: 204.5 bits (519), Expect = 8.3e-53
Identity = 124/213 (58.22%), Postives = 144/213 (67.61%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPFVRE----------FDMNRLPEVGDGEEEWAEEE 60
           MAILP NSSNLDL+IS+PG S    P   E           DMNRLP   DG++E    +
Sbjct: 74  MAILPENSSNLDLTISVPGFS--SSPLSDEGSGGGRDQLRLDMNRLPSSEDGDDEEFSHD 133

Query: 61  EESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNR 120
           + S      PRKKLRL+++QSRLLE+SFR NHTLNPKQKE LA  L L+PRQ+EVWFQNR
Sbjct: 134 DGS----APPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNR 193

Query: 121 RARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPIS 180
           RARSKLKQTE ECEYLKRWFGSLTE+N RL +E+EELRAMKV PT V S          S
Sbjct: 194 RARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNSA---------S 253

Query: 181 AITMCPRCERV--SASTITYGKGASSASTMPPE 202
           ++TMCPRCERV  +AS         +  T PP+
Sbjct: 254 SLTMCPRCERVTPAASPSRAVVPVPAKKTFPPQ 271

[Close]

BLAST of CmaCh04G020890 vs. TAIR 10
Match: AT1G70920.1 (homeobox-leucine zipper protein 18 )

HSP 1 Score: 168.7 bits (426), Expect = 5.1e-42
Identity = 112/214 (52.34%), Postives = 137/214 (64.02%), Query Frame = 0


Query: 1   MAILPINSSNLDLSISMPGSSPPRPPF-----VREFDMNRLPEVGDGEEEW-----AEEE 60
           MA+ P NSS+LDL+IS+P  S P P       +R+FD+N+ P+  + + EW         
Sbjct: 1   MALSP-NSSSLDLTISIPSFS-PSPSLGDHHGMRDFDINQTPKT-EEDREWMIGATPHVN 60

Query: 61  EESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNR 120
           E+   +  + RKKLRL+K+QS LLEESF  NHTL PKQK+ LA  LKL  RQVEVWFQNR
Sbjct: 61  EDDSNSGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNR 120

Query: 121 RARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPIS 180
           RARSKLK TE ECEYLKRWFGSL EQNRRL+ E+EELRA+K              P   S
Sbjct: 121 RARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK--------------PSSTS 180

Query: 181 AITMCPRCERVS------ASTITYGKGASSASTM 199
           A+TMCPRCERV+      ++ +  G   SS S M
Sbjct: 181 ALTMCPRCERVTDAVDNDSNAVQEGAVLSSRSRM 197

[Close]

BLAST of CmaCh04G020890 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-34
Identity = 82/148 (55.41%), Postives = 106/148 (71.62%), Query Frame = 0


Query: 50  EEESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQN 109
           ++E   N    RKKLRLSKDQ+ +LEE+F+ + TLNPKQK ALA +L L+ RQVEVWFQN
Sbjct: 151 DDEDGGNGDGSRKKLRLSKDQALVLEETFKEHSTLNPKQKLALAKQLNLRARQVEVWFQN 210

Query: 110 RRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPI 169
           RRAR+KLKQTE +CEYLKR   +LTE+NRRL++E+ ELRA+K++P      H      P 
Sbjct: 211 RRARTKLKQTEVDCEYLKRCCDNLTEENRRLQKEVSELRALKLSP------HLYMHMTPP 270

Query: 170 SAITMCPRCERVSASTITYGKGASSAST 198
           + +TMCP CERVS+S  T     S+ +T
Sbjct: 271 TTLTMCPSCERVSSSAATVTAAPSTTTT 292

[Close]

BLAST of CmaCh04G020890 vs. TAIR 10
Match: AT3G60390.1 (homeobox-leucine zipper protein 3 )

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-34
Identity = 86/168 (51.19%), Postives = 118/168 (70.24%), Query Frame = 0


Query: 47  AEEEEESCINDCKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVW 106
           +++E+ S   D   RKKLRLSK+Q+ +LEE+F+ + TLNPKQK ALA +L L+ RQVEVW
Sbjct: 147 SDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKEHSTLNPKQKMALAKQLNLRTRQVEVW 206

Query: 107 FQNRRARSKLKQTERECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPP 166
           FQNRRAR+KLKQTE +CEYLKR   +LT++NRRL++E+ ELRA+K++P      H     
Sbjct: 207 FQNRRARTKLKQTEVDCEYLKRCCENLTDENRRLQKEVSELRALKLSP------HLYMHM 266

Query: 167 LPISAITMCPRCERV---SASTITYGKGASSASTMPPEAFLSALKLRQ 212
            P + +TMCP CERV   S+S+       +S+S M P +  +A+ LRQ
Sbjct: 267 KPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGPMSPWAAMPLRQ 308

[Close]

BLAST of CmaCh04G020890 vs. TAIR 10
Match: AT5G06710.1 (homeobox from Arabidopsis thaliana )

HSP 1 Score: 141.7 bits (356), Expect = 6.6e-34
Identity = 77/124 (62.10%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 61  RKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTE 120
           RKKLRLSKDQS  LE+SF+ + TLNPKQK ALA +L L+PRQVEVWFQNRRAR+KLKQTE
Sbjct: 189 RKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTE 248

Query: 121 RECEYLKRWFGSLTEQNRRLRQELEELRAMKVAPTAVVSGHGRQPPLPISAITMCPRCER 180
            +CEYLKR   SLTE+NRRL++E++ELR +K +    +        LP + +TMCP CER
Sbjct: 249 VDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ-------LPATTLTMCPSCER 305

Query: 181 VSAS 185
           V+ S
Sbjct: 309 VATS 305

The following BLAST results are available for this feature:

BLAST of CmaCh04G020890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S9N6	1.2e-51	58.22	Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana OX=3702 GN=ATHB-...	[more]
Q9XH38	5.8e-51	68.71	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica OX=39946 GN=H...	[more]
Q0JKX1	5.8e-51	68.71	Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q8GXM7	7.1e-41	52.34	Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana OX=3702 GN=ATHB-X...	[more]
Q40691	3.8e-34	48.37	Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica OX=39946 GN=H...	[more]

BLAST of CmaCh04G020890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JHC4	1.6e-112	100.00	homeobox-leucine zipper protein ATHB-17-like isoform X2 OS=Cucurbita maxima OX=3...	[more]
A0A6J1JLP7	1.2e-110	97.71	homeobox-leucine zipper protein HOX3-like isoform X1 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HI65	1.1e-108	97.18	homeobox-leucine zipper protein ATHB-17-like isoform X2 OS=Cucurbita moschata OX...	[more]
A0A6J1HI55	7.8e-107	94.95	homeobox-leucine zipper protein HOX3-like isoform X1 OS=Cucurbita moschata OX=36...	[more]
A0A6J1DFP4	5.4e-76	72.44	homeobox-leucine zipper protein HOX3-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]

BLAST of CmaCh04G020890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989987.1	3.3e-112	100.00	homeobox-leucine zipper protein ATHB-17-like isoform X2 [Cucurbita maxima]	[more]
XP_022989986.1	2.4e-110	97.71	homeobox-leucine zipper protein HOX3-like isoform X1 [Cucurbita maxima]	[more]
XP_022963500.1	2.2e-108	97.18	homeobox-leucine zipper protein ATHB-17-like isoform X2 [Cucurbita moschata]	[more]
XP_023520823.1	5.0e-108	97.18	homeobox-leucine zipper protein ATHB-17-like [Cucurbita pepo subsp. pepo] >XP_02...	[more]
KAG7032540.1	5.0e-108	97.18	Homeobox-leucine zipper protein ATHB-17, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of CmaCh04G020890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01430.1	8.3e-53	58.22	homeobox-leucine zipper protein 17	[more]
AT1G70920.1	5.1e-42	52.34	homeobox-leucine zipper protein 18	[more]
AT2G44910.1	3.0e-34	55.41	homeobox-leucine zipper protein 4	[more]
AT3G60390.1	6.6e-34	51.19	homeobox-leucine zipper protein 3	[more]
AT5G06710.1	6.6e-34	62.10	homeobox from Arabidopsis thaliana	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 130..153
None	No IPR available	GENE3D	1.10.10.60		coord: 67..113 e-value: 8.1E-19 score: 69.1
None	No IPR available	PANTHER	PTHR45714	FAMILY NOT NAMED	coord: 1..191
None	No IPR available	PANTHER	PTHR45714:SF8	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17	coord: 1..191
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 117..160 e-value: 1.5E-18 score: 77.7
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 117..151 e-value: 1.3E-9 score: 38.1
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 59..121 e-value: 9.4E-17 score: 71.7
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 61..115 e-value: 8.8E-17 score: 60.7
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 57..117 score: 16.908318
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 60..118 e-value: 3.49978E-16 score: 68.0388
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 92..115
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 55..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020890.1	CmaCh04G020890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding