CmaCh04G020820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type domain-containing protein
Location	Cma_Chr04: 14402244 .. 14402812 (-)
RNA-Seq Expression	CmaCh04G020820
Synteny	CmaCh04G020820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTACAGACCCAACTCAACGACTTCTCCTCCGACTCACTCCCTCTCTTCTTCCTCTCTCTCCTTGCCAATTTCCTCTCCCTCCTCCGCCGCTCTTTCCTCTCCTCCGCCGCTCCGTCTGCCGATTCCGATATTTCCCCTCTCCCCCACCATCTTCATCTCAATCGCCTTCTCTCCCACCGCTACGCCGATTCCGCCGCCTCCGACTGTGTCGTCTGCCTCTGTCCCCTCTCCGCTGGTAACCTCGTCCGCCGTCTCCCCTGCAACCACATCTTCCACAAGGACTGCCTCGATGGTTGGCTTCATCATCTCAACTTCAACTGCCCTCTCTGCCGCTCCCCCATCCACTTACACCAGCGCGTACCATTCACGCTCCACTCTCCTCTCCCCCACCACGTTCTCGCCTAATTCTCCGTCTCCACGATCCTACGGTTCTGCTCCTGCCACGTGTTCGCATCCTCTGAGCTGAGCATCATTTTTTTTTTTTTTATGACTTTTTAGGTGGTCCCTTATGGCAGTTTTGACCATGGGCTTTTTTTTTTCTTTCTTTTTATATATAGATTTAA

mRNA sequence

ATGGGTTTACAGACCCAACTCAACGACTTCTCCTCCGACTCACTCCCTCTCTTCTTCCTCTCTCTCCTTGCCAATTTCCTCTCCCTCCTCCGCCGCTCTTTCCTCTCCTCCGCCGCTCCGTCTGCCGATTCCGATATTTCCCCTCTCCCCCACCATCTTCATCTCAATCGCCTTCTCTCCCACCGCTACGCCGATTCCGCCGCCTCCGACTGTGTCGTCTGCCTCTGTCCCCTCTCCGCTGGTAACCTCGTCCGCCGTCTCCCCTGCAACCACATCTTCCACAAGGACTGCCTCGATGGTTGGCTTCATCATCTCAACTTCAACTGCCCTCTCTGCCGCTCCCCCATCCACTTACACCAGCGCATTTAA

Coding sequence (CDS)

ATGGGTTTACAGACCCAACTCAACGACTTCTCCTCCGACTCACTCCCTCTCTTCTTCCTCTCTCTCCTTGCCAATTTCCTCTCCCTCCTCCGCCGCTCTTTCCTCTCCTCCGCCGCTCCGTCTGCCGATTCCGATATTTCCCCTCTCCCCCACCATCTTCATCTCAATCGCCTTCTCTCCCACCGCTACGCCGATTCCGCCGCCTCCGACTGTGTCGTCTGCCTCTGTCCCCTCTCCGCTGGTAACCTCGTCCGCCGTCTCCCCTGCAACCACATCTTCCACAAGGACTGCCTCGATGGTTGGCTTCATCATCTCAACTTCAACTGCCCTCTCTGCCGCTCCCCCATCCACTTACACCAGCGCATTTAA

Protein sequence

MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSAAPSADSDISPLPHHLHLNRLLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPIHLHQRI

Homology

[Close]

BLAST of CmaCh04G020820 vs. ExPASy Swiss-Prot
Match: Q9ZU51 (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 SV=2)

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-33
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSAAP--SADSDISPLPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNR
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 60

Query: 61  LLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI- 120
           L S+RY+D+AASDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP+ 
Sbjct: 61  LFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of CmaCh04G020820 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-25
Identity = 66/131 (50.38%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL---SSAAPSADSD----------IS 60
           MGLQ QL+D SSDS+PL  LSLLA F++ LR   L   S + P+   D          I 
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  PLPHHLHLNRLLSHRYAD--SAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHL 117
            L   L LNRL S+R  D     SDCVVCL  L  G  VR+L C H+FHK CL+GWLH  
Sbjct: 61  VLADQLSLNRLFSYRCGDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQF 120

[Close]

BLAST of CmaCh04G020820 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.4e-09
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 62  RYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI 117
           R    A ++C VCL      + + +L C H+FHK CL+ W+ + N  CPLCR+P+
Sbjct: 94  RCKKQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh04G020820 vs. ExPASy Swiss-Prot
Match: Q93Z92 (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 69  SDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCR 114
           ++C +CLC    G  +R LPCNH FH  C+D WL H+N  CPLC+
Sbjct: 336 AECCICLCEYEDGVELRELPCNHHFHCTCIDKWL-HINSRCPLCK 379

[Close]

BLAST of CmaCh04G020820 vs. ExPASy Swiss-Prot
Match: Q9H0F5 (E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens OX=9606 GN=RNF38 PE=1 SV=4)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-07
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 71  CVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRS 115
           CVVC+C   +  L+R LPCNH FH  C+D WL   N  CP+CR+
Sbjct: 463 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL-KANRTCPICRA 505

[Close]

BLAST of CmaCh04G020820 vs. ExPASy TrEMBL
Match: A0A251SN01 (Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr14g0459201 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.2e-30
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFLS----SAAPSADSDISPLPHHLHLN 60
           MGLQ  L D SSDSLPL  L+ +A  +S LR  F +    S  PS D  +  L HHL+LN
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDDPMLLTLSHHLNLN 60

Query: 61  RLLSHRY-ADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSP 120
            LLS+++  D   SDCVVCL  L+AG  VR+LPC+H+FHK+C DGWLHHLNFNCPLCRSP
Sbjct: 61  SLLSYKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNCPLCRSP 120

Query: 121 IHLHQRI 123
           +   +R+
Sbjct: 121 VVFDERV 127

[Close]

BLAST of CmaCh04G020820 vs. ExPASy TrEMBL
Match: D7LR04 (RING-type domain-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_484022 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 72/125 (57.60%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL--SSAAP----SADSDISPLPHHLH 60
           MGLQ QL+D SSDS+PL  L+LLA F+  +R   L  SSAAP       S++S L   L+
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFIRHVRSLLLLPSSAAPVVVVVVSSNLSVLADQLN 60

Query: 61  LNRLLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRS 120
           LNRL S+RY+D+AAS+C+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRS
Sbjct: 61  LNRLFSYRYSDNAASECIVCLSTLKTGEQVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRS 120

[Close]

BLAST of CmaCh04G020820 vs. ExPASy TrEMBL
Match: A0A384KIF8 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g00110 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSAAP--SADSDISPLPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNR
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 60

Query: 61  LLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI- 120
           L S+RY+D+AASDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP+ 
Sbjct: 61  LFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of CmaCh04G020820 vs. ExPASy TrEMBL
Match: A0A654EQW0 (RING-type domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS7160 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSAAP--SADSDISPLPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNR
Sbjct: 50  MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 109

Query: 61  LLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI- 120
           L S+RY+D+AASDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP+ 
Sbjct: 110 LFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 169

[Close]

BLAST of CmaCh04G020820 vs. ExPASy TrEMBL
Match: A0A1P8B060 (RING-H2 finger protein 2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSAAP--SADSDISPLPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNR
Sbjct: 27  MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 86

Query: 61  LLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI- 120
           L S+RY+D+AASDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP+ 
Sbjct: 87  LFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 146

[Close]

BLAST of CmaCh04G020820 vs. NCBI nr
Match: KAG7032532.1 (E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.0 bits (606), Expect = 4.2e-59
Identity = 115/123 (93.50%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSAAPSADSDISPLPHHLHLNRLLS 60
           MGLQ+QLNDFSSDSLPLFFLSLLANFLSLLRRSFLSS APS DSDISPL  HLHLNRLLS
Sbjct: 1   MGLQSQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSTAPSPDSDISPLHQHLHLNRLLS 60

Query: 61  HR-YADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPIHLH 120
           HR YADSAASDCVVCLCPLSAGN VRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPIHLH
Sbjct: 61  HRYYADSAASDCVVCLCPLSAGNPVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPIHLH 120

Query: 121 QRI 123
           QR+
Sbjct: 121 QRV 123

[Close]

BLAST of CmaCh04G020820 vs. NCBI nr
Match: KAG7563173.1 (Zinc finger RING-type [Arabidopsis suecica])

HSP 1 Score: 144.1 bits (362), Expect = 8.2e-31
Identity = 73/124 (58.87%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL--SSAAP---SADSDISPLPHHLHL 60
           MGLQ QL+D SSDS+PL  L+LLA F+  +R   L  SSAAP      S++S L   L+L
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFIRHVRSLLLLPSSAAPVVVVVSSNLSVLADQLNL 60

Query: 61  NRLLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSP 120
           NRL S+RY+D+AASDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP
Sbjct: 61  NRLFSYRYSDNAASDCIVCLSSLKTGEQVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSP 120

[Close]

BLAST of CmaCh04G020820 vs. NCBI nr
Match: XP_010513818.1 (PREDICTED: E3 ubiquitin-protein ligase RHA2B-like [Camelina sativa])

HSP 1 Score: 143.3 bits (360), Expect = 1.4e-30
Identity = 71/121 (58.68%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFLSSAAP---SADSDISPLPHHLHLNR 60
           MGLQ QL+D SSDS+PL  ++LLA F   +R   L  +AP   S  S+IS L   L+LNR
Sbjct: 1   MGLQGQLSDVSSDSIPLMLVALLATFFRHVRSLLLLPSAPVVTSGLSNISALADQLNLNR 60

Query: 61  LLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPIH 119
           L S+RYAD+A+SDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP+ 
Sbjct: 61  LFSYRYADNASSDCIVCLSTLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of CmaCh04G020820 vs. NCBI nr
Match: XP_022006424.1 (E3 ubiquitin-protein ligase RHA2B [Helianthus annuus] >KAF5777337.1 putative transcription factor C2H2 family [Helianthus annuus])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFLS----SAAPSADSDISPLPHHLHLN 60
           MGLQ  L D SSDSLPL  L+ +A  +S LR  F +    S  PS D  +  L HHL+LN
Sbjct: 1   MGLQNHLTDVSSDSLPLLLLATIATAVSYLRSLFFTFLGISPYPSDDPMLLTLSHHLNLN 60

Query: 61  RLLSHRY-ADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSP 120
            LLS+++  D   SDCVVCL  L+AG  VR+LPC+H+FHK+C DGWLHHLNFNCPLCRSP
Sbjct: 61  SLLSYKHDPDPVDSDCVVCLNRLTAGEHVRKLPCHHVFHKECFDGWLHHLNFNCPLCRSP 120

Query: 121 IHLHQRI 123
           +   +R+
Sbjct: 121 VVFDERV 127

[Close]

BLAST of CmaCh04G020820 vs. NCBI nr
Match: KAG7558343.1 (Zinc finger RING-type [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 72/124 (58.06%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL--SSAAP---SADSDISPLPHHLHL 60
           MGLQ QL+D SSDS+PL  L+LLA F+  +R   L  SSAAP      S++S L   L+L
Sbjct: 22  MGLQGQLSDVSSDSIPLMLLALLATFIRHVRSLLLLPSSAAPVVVVVSSNLSVLADQLNL 81

Query: 61  NRLLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSP 120
           NRL S+RY+D+AAS+C+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP
Sbjct: 82  NRLFSYRYSDNAASECIVCLSSLKTGEQVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSP 141

[Close]

BLAST of CmaCh04G020820 vs. TAIR 10
Match: AT2G01150.1 (RING-H2 finger protein 2B )

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-34
Identity = 73/125 (58.40%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL-SSAAP--SADSDISPLPHHLHLNR 60
           MGLQ QL+D SSDS+PL  L+LLA F   +R   L  S+AP     S++S L   L+LNR
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLALLATFFRHVRSLLLFPSSAPVVVVTSNLSVLADQLNLNR 60

Query: 61  LLSHRYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI- 120
           L S+RY+D+AASDC+VCL  L  G  VR+L C H+FHK CL+GWL HLNFNCPLCRSP+ 
Sbjct: 61  LFSYRYSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLL 120

[Close]

BLAST of CmaCh04G020820 vs. TAIR 10
Match: AT1G15100.1 (RING-H2 finger A2A )

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-26
Identity = 66/131 (50.38%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 1   MGLQTQLNDFSSDSLPLFFLSLLANFLSLLRRSFL---SSAAPSADSD----------IS 60
           MGLQ QL+D SSDS+PL  LSLLA F++ LR   L   S + P+   D          I 
Sbjct: 1   MGLQGQLSDVSSDSIPLMLLSLLAVFINHLRSFLLRLTSKSNPNLPVDDVSIASGLANII 60

Query: 61  PLPHHLHLNRLLSHRYAD--SAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHL 117
            L   L LNRL S+R  D     SDCVVCL  L  G  VR+L C H+FHK CL+GWLH  
Sbjct: 61  VLADQLSLNRLFSYRCGDGGGGGSDCVVCLSKLKEGEEVRKLECRHVFHKKCLEGWLHQF 120

[Close]

BLAST of CmaCh04G020820 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-10
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 62  RYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI 117
           R    A ++C VCL      + + +L C H+FHK CL+ W+ + N  CPLCR+P+
Sbjct: 94  RCKKQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh04G020820 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-10
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 62  RYADSAASDCVVCLCPLSAGNLVRRLPCNHIFHKDCLDGWLHHLNFNCPLCRSPI 117
           R    A ++C VCL      + + +L C H+FHK CL+ W+ + N  CPLCR+P+
Sbjct: 94  RCKKQADNECSVCLSKFQGDSEINKLKCGHLFHKTCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmaCh04G020820 vs. TAIR 10
Match: AT5G45290.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 35/89 (39.33%), Postives = 47/89 (52.81%), Query Frame = 0


Query: 35  LSSAAPSADSDIS-PLPHHLHLNRLLSHRYADSAASD---CVVCLCPLSAGNLVRRLPCN 94
           LSS  PS  S  S P P+ + ++ L    Y  S + D   C +CL      + +R LPC+
Sbjct: 451 LSSQQPSVSSIGSVPAPNDV-VDLLPIKLYTKSQSEDPSQCYICLVEYEEADSIRTLPCH 510

Query: 95  HIFHKDCLDGWLHHLNFNCPLCRSPIHLH 120
           H FHK C+D WL  ++  CPLCR  I  H
Sbjct: 511 HEFHKTCVDKWLKEIHRVCPLCRGDICRH 538

The following BLAST results are available for this feature:

BLAST of CmaCh04G020820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZU51	5.3e-33	58.40	E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=1 ...	[more]
Q9ZT50	5.4e-25	50.38	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]
Q9SI09	5.4e-09	40.00	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q93Z92	2.7e-08	51.11	E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g116...	[more]
Q9H0F5	1.3e-07	52.27	E3 ubiquitin-protein ligase RNF38 OS=Homo sapiens OX=9606 GN=RNF38 PE=1 SV=4	[more]

BLAST of CmaCh04G020820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251SN01	1.2e-30	55.91	Putative zinc finger, RING/FYVE/PHD-type OS=Helianthus annuus OX=4232 GN=HannXRQ...	[more]
D7LR04	1.5e-30	57.60	RING-type domain-containing protein OS=Arabidopsis lyrata subsp. lyrata OX=81972...	[more]
A0A384KIF8	2.0e-30	58.40	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g...	[more]
A0A654EQW0	2.0e-30	58.40	RING-type domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS...	[more]
A0A1P8B060	2.0e-30	58.40	RING-H2 finger protein 2B OS=Arabidopsis thaliana OX=3702 GN=RHA2B PE=4 SV=1	[more]

BLAST of CmaCh04G020820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032532.1	4.2e-59	93.50	E3 ubiquitin-protein ligase RHA2B, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7563173.1	8.2e-31	58.87	Zinc finger RING-type [Arabidopsis suecica]	[more]
XP_010513818.1	1.4e-30	58.68	PREDICTED: E3 ubiquitin-protein ligase RHA2B-like [Camelina sativa]	[more]
XP_022006424.1	2.4e-30	55.91	E3 ubiquitin-protein ligase RHA2B [Helianthus annuus] >KAF5777337.1 putative tra...	[more]
KAG7558343.1	2.4e-30	58.06	Zinc finger RING-type [Arabidopsis thaliana x Arabidopsis arenosa]	[more]

BLAST of CmaCh04G020820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01150.1	3.8e-34	58.40	RING-H2 finger protein 2B	[more]
AT1G15100.1	3.8e-26	50.38	RING-H2 finger A2A	[more]
AT2G04240.1	3.8e-10	40.00	RING/U-box superfamily protein	[more]
AT2G04240.2	3.8e-10	40.00	RING/U-box superfamily protein	[more]
AT5G45290.1	1.1e-09	39.33	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 71..112 e-value: 4.2E-6 score: 36.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 70..113 e-value: 1.0E-11 score: 45.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 71..113 score: 12.282736
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 35..118 e-value: 4.7E-18 score: 66.7
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 1..36 coord: 39..121
None	No IPR available	PANTHER	PTHR45969:SF5	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 1..36
None	No IPR available	PANTHER	PTHR45969:SF5	E3 UBIQUITIN-PROTEIN LIGASE RHA2A	coord: 39..121
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 70..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020820.1	CmaCh04G020820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009789	positive regulation of abscisic acid-activated signaling pathway
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0047484	regulation of response to osmotic stress
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0061630	ubiquitin protein ligase activity