CmaCh04G020760 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTAA ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTAA ATGGCGTCGCTTCTCAAATTCAAGCTCCTCCCGACCCACTGCGGCGTCGCTCAGAGTCCCACCTTGAGCCCTAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCCTCCGGATGCTCCTCACTCGGAATTCCGCCCGCCGCCGCGCCTTGCCGGATAAGAAACGAGACGACCACAAGGATTTATCACGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCACCGCCGTATGATGAATCCGACGGCGAGATTAACGAGACCGTTGCGGCGGCTCCGATCCGGAACGTGACTCCGGTTTGTAGGGAGGAGGATGGTGAGATTGGACCGACCGGTTGGCATCCAGGTTCGCCTAGACCGGGTTGGACCGGTTTCCGATACAAATACTTGCTCCGGAAAACCTGGCGGCCACTGCTCGCCGGAATCCCCGAGTAA MASLLKFKLLPTHCGVAQSPTLSPRTSPLVHLRRRKTTLRMLLTRNSARRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDESDGEINETVAAAPIRNVTPVCREEDGEIGPTGWHPGSPRPGWTGFRYKYLLRKTWRPLLAGIPE Homology
BLAST of CmaCh04G020760 vs. ExPASy TrEMBL
Match: A0A6J1I9M9 (uncharacterized protein LOC111470493 OS=Cucurbita maxima OX=3661 GN=LOC111470493 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 1.8e-78 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of CmaCh04G020760 vs. ExPASy TrEMBL
Match: A0A6J1HGM7 (uncharacterized protein LOC111463373 OS=Cucurbita moschata OX=3662 GN=LOC111463373 PE=4 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75 Identity = 143/150 (95.33%), Postives = 144/150 (96.00%), Query Frame = 0
BLAST of CmaCh04G020760 vs. ExPASy TrEMBL
Match: A0A6J1DFV6 (uncharacterized protein LOC111020064 OS=Momordica charantia OX=3673 GN=LOC111020064 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 2.9e-60 Identity = 125/152 (82.24%), Postives = 131/152 (86.18%), Query Frame = 0
BLAST of CmaCh04G020760 vs. ExPASy TrEMBL
Match: A0A0A0KPK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576820 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 4.6e-58 Identity = 118/153 (77.12%), Postives = 130/153 (84.97%), Query Frame = 0
BLAST of CmaCh04G020760 vs. ExPASy TrEMBL
Match: A0A5D3BMD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00090 PE=4 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 6.0e-58 Identity = 120/155 (77.42%), Postives = 131/155 (84.52%), Query Frame = 0
BLAST of CmaCh04G020760 vs. NCBI nr
Match: XP_022971824.1 (uncharacterized protein LOC111470493 [Cucurbita maxima]) HSP 1 Score: 301.6 bits (771), Expect = 3.7e-78 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of CmaCh04G020760 vs. NCBI nr
Match: KAG7032525.1 (hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76 Identity = 146/150 (97.33%), Postives = 146/150 (97.33%), Query Frame = 0
BLAST of CmaCh04G020760 vs. NCBI nr
Match: KAG6601820.1 (hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 293.5 bits (750), Expect = 1.0e-75 Identity = 145/150 (96.67%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of CmaCh04G020760 vs. NCBI nr
Match: XP_023513243.1 (uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 290.8 bits (743), Expect = 6.5e-75 Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0
BLAST of CmaCh04G020760 vs. NCBI nr
Match: XP_022963063.1 (uncharacterized protein LOC111463373 [Cucurbita moschata]) HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74 Identity = 143/150 (95.33%), Postives = 144/150 (96.00%), Query Frame = 0
BLAST of CmaCh04G020760 vs. TAIR 10
Match: AT1G68430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 84.7 bits (208), Expect = 6.6e-17 Identity = 67/156 (42.95%), Postives = 80/156 (51.28%), Query Frame = 0
BLAST of CmaCh04G020760 vs. TAIR 10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 81.3 bits (199), Expect = 7.3e-16 Identity = 69/163 (42.33%), Postives = 86/163 (52.76%), Query Frame = 0
BLAST of CmaCh04G020760 vs. TAIR 10
Match: AT5G16200.1 (50S ribosomal protein-related ) HSP 1 Score: 60.1 bits (144), Expect = 1.7e-09 Identity = 65/174 (37.36%), Postives = 90/174 (51.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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