CmaCh04G020730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	MAG2-interacting protein 2-like
Location	Cma_Chr04: 14105807 .. 14106220 (-)
RNA-Seq Expression	CmaCh04G020730
Synteny	CmaCh04G020730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGCTCGAACAGAAAGTACTTTACGAAACTCGTCGCCACGCCGCGAGACCATTCTATTCCAACTATCCTCCTCACCAGGTCTGTACTTCACTCCTTTCTTCTTACCTCTCACTGATTCGAAGTATATAACCCCAATTCCGTTGTGTTCAATTTGTTTTTCTAGATTTCCTTGTTGTTGTATTATGTGTGTATTTCTCCGTTCGTATTTAGGCGATCGCAGGTTCCAAAGGGAGTTTCCTTTCTCTGTTTCGCATGGGAGGTGTGTTGCATTACTGTTCAATTGTGATGTAATTGGGATCGATTCAAGTTAAGATGAATTAGAAATGTCCAAAGTTATCATTGAAGAATGTGTATCTTGTGAGTGGGTGTGTTATTCAAATCACCTCGTTTCAAGATAACGATCATTGA

mRNA sequence

ATGGAGGAGCTCGAACAGAAAGTACTTTACGAAACTCGTCGCCACGCCGCGAGACCATTCTATTCCAACTATCCTCCTCACCAGGTCTGTACTTCACTCCTTTCTTCTTACCTCTCACTGATTCGAAGCGATCGCAGGTTCCAAAGGGAGTTTCCTTTCTCTGTTTCGCATGGGAGGTGTGTTGCATTACTGTTCAATTGTGATAATGTGTATCTTGTGAGTGGGTGTGTTATTCAAATCACCTCGTTTCAAGATAACGATCATTGA

Coding sequence (CDS)

ATGGAGGAGCTCGAACAGAAAGTACTTTACGAAACTCGTCGCCACGCCGCGAGACCATTCTATTCCAACTATCCTCCTCACCAGGTCTGTACTTCACTCCTTTCTTCTTACCTCTCACTGATTCGAAGCGATCGCAGGTTCCAAAGGGAGTTTCCTTTCTCTGTTTCGCATGGGAGGTGTGTTGCATTACTGTTCAATTGTGATAATGTGTATCTTGTGAGTGGGTGTGTTATTCAAATCACCTCGTTTCAAGATAACGATCATTGA

Protein sequence

MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQREFPFSVSHGRCVALLFNCDNVYLVSGCVIQITSFQDNDH

Homology

[Close]

BLAST of CmaCh04G020730 vs. ExPASy TrEMBL
Match: A0A6J1I490 (MAG2-interacting protein 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111470491 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-09
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELEQKVLYETRRHAARPFYSNYPPHQ       S+LSL R   R +
Sbjct: 1  MEELEQKVLYETRRHAARPFYSNYPPHQAIAGSKGSFLSLFRIGGRLR 48

[Close]

BLAST of CmaCh04G020730 vs. ExPASy TrEMBL
Match: A0A6J1H784 (MAG2-interacting protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111460242 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.8e-08
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELEQKVLYETRRHA+RPF  NYPPHQV      S+LSL R   R +
Sbjct: 1  MEELEQKVLYETRRHASRPFRPNYPPHQVIAGSKGSFLSLFRIGGRLR 48

[Close]

BLAST of CmaCh04G020730 vs. ExPASy TrEMBL
Match: A0A6J1H5I1 (MAG2-interacting protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111460309 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQREF 52
          MEELEQKVLYETRRHA+RPF  NYPPHQ       S+LSL R   R + ++
Sbjct: 1  MEELEQKVLYETRRHASRPFRPNYPPHQAIVGSKWSFLSLFRIGGRLRNKW 51

[Close]

BLAST of CmaCh04G020730 vs. ExPASy TrEMBL
Match: A0A6J1I6S6 (MAG2-interacting protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470491 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.8e-07
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELE+KVLYETRRHA+RPF  NYPPHQ       S+LSL R   R +
Sbjct: 1  MEELEEKVLYETRRHASRPFRPNYPPHQAIAGSKGSFLSLFRIGGRLR 48

[Close]

BLAST of CmaCh04G020730 vs. ExPASy TrEMBL
Match: A0A1S3B8Q4 (MAG2-interacting protein 2 OS=Cucumis melo OX=3656 GN=LOC103487258 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQREFPFSVSH--- 60
          MEEL QKVLYETRRHA+RPF SNYPP+Q       S+LSL R   R + ++    +H   
Sbjct: 1  MEELHQKVLYETRRHASRPFPSNYPPNQANEGAKWSFLSLFRIGGRLKDKW-IGCNHMQR 60

Query: 61 -GRCVALLF--NCDNVYLVSGCVIQITSFQDN 87
           GR V+L    + + V +  G +I I   +D+
Sbjct: 61 IGRSVSLFISPSGERVAVAVGNLITILRKEDD 91

[Close]

BLAST of CmaCh04G020730 vs. NCBI nr
Match: XP_022971816.1 (MAG2-interacting protein 2 isoform X3 [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 3.7e-09
Identity = 34/48 (70.83%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELEQKVLYETRRHAARPFYSNYPPHQ       S+LSL R   R +
Sbjct: 1  MEELEQKVLYETRRHAARPFYSNYPPHQAIAGSKGSFLSLFRIGGRLR 48

[Close]

BLAST of CmaCh04G020730 vs. NCBI nr
Match: KAG6601818.1 (MAG2-interacting protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELEQKVLYETRRHA+RPF  NYPPHQV      S+LSL R   R +
Sbjct: 1  MEELEQKVLYETRRHASRPFRPNYPPHQVIAGSKGSFLSLFRIGGRLR 48

[Close]

BLAST of CmaCh04G020730 vs. NCBI nr
Match: XP_022959174.1 (MAG2-interacting protein 2-like [Cucurbita moschata] >XP_022959184.1 MAG2-interacting protein 2-like [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELEQKVLYETRRHA+RPF  NYPPHQV      S+LSL R   R +
Sbjct: 1  MEELEQKVLYETRRHASRPFRPNYPPHQVIAGSKGSFLSLFRIGGRLR 48

[Close]

BLAST of CmaCh04G020730 vs. NCBI nr
Match: XP_022959283.1 (MAG2-interacting protein 2-like [Cucurbita moschata])

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-07
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQREF 52
          MEELEQKVLYETRRHA+RPF  NYPPHQ       S+LSL R   R + ++
Sbjct: 1  MEELEQKVLYETRRHASRPFRPNYPPHQAIVGSKWSFLSLFRIGGRLRNKW 51

[Close]

BLAST of CmaCh04G020730 vs. NCBI nr
Match: XP_022971815.1 (MAG2-interacting protein 2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 63.9 bits (154), Expect = 7.8e-07
Identity = 30/48 (62.50%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MEELEQKVLYETRRHAARPFYSNYPPHQVCTSLLSSYLSLIRSDRRFQ 49
          MEELE+KVLYETRRHA+RPF  NYPPHQ       S+LSL R   R +
Sbjct: 1  MEELEEKVLYETRRHASRPFRPNYPPHQAIAGSKGSFLSLFRIGGRLR 48

The following BLAST results are available for this feature:

BLAST of CmaCh04G020730 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I490	1.8e-09	70.83	MAG2-interacting protein 2 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11147049...	[more]
A0A6J1H784	5.8e-08	66.67	MAG2-interacting protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111460242 PE...	[more]
A0A6J1H5I1	2.2e-07	60.78	MAG2-interacting protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111460309 PE...	[more]
A0A6J1I6S6	3.8e-07	62.50	MAG2-interacting protein 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11147049...	[more]
A0A1S3B8Q4	2.4e-06	43.48	MAG2-interacting protein 2 OS=Cucumis melo OX=3656 GN=LOC103487258 PE=4 SV=1	[more]

BLAST of CmaCh04G020730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971816.1	3.7e-09	70.83	MAG2-interacting protein 2 isoform X3 [Cucurbita maxima]	[more]
KAG6601818.1	1.2e-07	66.67	MAG2-interacting protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022959174.1	1.2e-07	66.67	MAG2-interacting protein 2-like [Cucurbita moschata] >XP_022959184.1 MAG2-intera...	[more]
XP_022959283.1	4.6e-07	60.78	MAG2-interacting protein 2-like [Cucurbita moschata]	[more]
XP_022971815.1	7.8e-07	62.50	MAG2-interacting protein 2 isoform X2 [Cucurbita maxima]	[more]

BLAST of CmaCh04G020730 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020730.1	CmaCh04G020730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport