CmaCh04G020690 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020690
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 13926891 .. 13931508 (+)
RNA-Seq Expression	CmaCh04G020690
Synteny	CmaCh04G020690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGGTTCGAGTATGTGAGTGTGTGGGTCTGGGTCGAAGGATAGGTGAGCCATGGGTTGCAAATGCGAGGTGGGCTGGGGATGTGTAACTTGGTCAAAGAGAGGCTGTTTGATCCAGGATCAATGAACTTTTAAGCTCTATTTAGGAAGCTGTTTAGTGCTGAAGGGATCTAAAATGGGAAGACTTACACTTGATTCCGCAGTGGAGATTCATCCAAATTCAATTGCATTATCACTCAAGAAAGCTTCTCGTCGTTTCATTCCTCACAAGCTTGGTTGAAAGCAAATCCAGCCTCAGATCCAAGGCGGAACCTCCAATTCCGGCCCAGATTACGTCGTAAATGGCGAAGGAGAAGGAGGTATCGCAACGAGAACATTGTATTTGCCGTCGGAATGGTGATGGAGGAATTTAATGCCTATAATTCCATGACGCAGCAGCCGTATTGGCCATGCCCGCACCGCCGTCAACTTCGATGTCGTCTACAGGTTTACCTATTTCTACATTTAGTATCTCTATAATATGCAATTGATTGTAGATACGATCAATTTTTAGATAACGAGGCTGTAAATAGCGTCTGGATATCAAGGTTCCAGGAGTTATATATTACATTACACCTTTCTGGAACTGTTTGGTTTTTATTTGTCTTATTTAGCCTAACTATCAGAGAAAGTAGTCGAACTACTGTTTCTGGTAACTCAGTTCTTCGTTGCTCTGTAAAATTTAGTTAGTCTGTGATTCTGGAACAATTGAAGATGCTCTTTCATTTTTTTAGTGGTGATTTGACTTGTACGAATGAATTAGGTGCCACAAAAAGATGTCAACGATGCTTGATTGATAATTAAAGATTTTGGAGTGGGGATATGAATGTGAGCTGCTAACTGTGAGCCTATAAGCTTGTAGACAATTTGCTAAATACGCATTTTCTCTGGAGTTCTGTAAGGCTCATTACTCTATAATAAACTTTCTGAGTGAGAAAATCTTTACCTCTTCATAATTATTTTCTGAAAAGGATGAGCATCTGTCTAGATGAGCTCTTGAAATAATGTGACAGAAAGAGAGAAAGAGAATGTTAAAGGGCTGAGTTGCCCCGGATAAGTTCGATCAGTTTCTTACTTCTATTTGGACGACTCTGAAGTTATTGCCGAAGACCAATTCAACAAGTGCTAATACAGACGGTCAGAGACAGCAGCAGATAAAAGAGCATCTAGCCCCCTTGGTTGGTTCGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCAAGCATCTTTGGGATATTGTATTGTTCACACGTTGATCTATTGGGATATAAGATAGTTAATATTTTAGATGTATAGAATACCTTTGCAGAGTGAATCTTGGAAAATTATTGCAGCACTATGTTGCAATAGGATAGTGAAGGAAAAATACAACTTTGGTTCTCAACAGCCTGATTATATTAGCAGCATCAATTAGGATGAAGTGCCATTTTTTGGTCTTTTGTGCATTTTAGCTACGCTTAGACAGCTTGGAGTCAAAGCTAAGTTAATGATTGCAAATGTTTGTTTTGTGGAAAAGTCTCTAAAGATGCATTTCATGACCAAGAACAACAAACAATACTGGCTATGCTACTACCAATGCAATTTGTTTCTACTGCAATTCATAGAATCATTGTAAGGTGGACCTACCGCTCTTCTTGATCCTCATCTAAATTTCTTATTAATTTTGTTCCCTTTCTACTTAAACTCATTTTGGTTTAGCTTTTTATGTGCTCCTCTGGGAAAGATTTAGCTTTATTGTTTTTATTTGTAATTTTTTTGGAAAGAGATTCTTGAAATGCATAAAGGATGACACGGCAACAATTTTCCGATGGAGGAGTGAGTTAGTTTCTCCTGTGTTGTAGAAAATTTGGAGCCAATACATTTGAATCATCCCATAATTTAGCCTTGGTGACAAGTATAATGTCGTTATTGCTTAATTTTTCTACTCTTAACATTTAGCCTTGAGGTTGCTATTCTAACTATTTAACAGATAATTCAACGGGAAAATGAATTGGAGGAGAATCCAGTGACGTTAAGTGACTGCTTTTGCCCAAGAATATCTTGCGGACATGGCCGATCTCCAGTGCCTTTCTCCTACACATCAACCTTGTGTGTCTGATCACATGGAATAAATCAAGGATATGATGACTCAGGTATGTATCTTTATGCCTACTCAATGATTAATTTTTTTAAGTTTACTTTCTGAAAGTTGCAATTATAAGATTCAAACCAGGGTAGTCCCACAATGAAATCCATTGAAAGATCATCCCATATTCGTTCGGAAATAAACCAACTGGAGCTTCAGTTCCCTCGTTCAATTTGTTTCTCATTGCAACCAAAATAGGATCAATTTGCGGTTGGTCTAAAATTAGCTTCAAATTCATACTTCCAAGCCACACTAATTGCCGTACATTCTAGTGTTTGAGGAAGTCTTGATAAACCATCAGCTGCCCTATTCTCTTTTCCTGGTTTGTGCACAATTTCAATGTTGAATCCCATTAATTTTTTCATCAACTTATGATATTCTCAACCCACCATTCGTTGATCCAATATTAATTTATGATATTCTTCACCTGGGGAACATGAGAAAAGCACAAACAACCGAACACCTTCAAAATTTTCAGGTTTGGTTTGGTATTAAACTAAGTTTCGTAGTGTGTCATCTTCTCCAATACACTTGGAACAACCAAGCACCTTCATATAAAGACTGTTGTGTTTGCTGTTTCAACCCAAAACTCATTCAATAAGTTCCTCTCATGCAACATACCTCTTGTCATCTCCATAATACTCCAGTTCTTCCTCTTAGTAACTCTGTTTTGAATTATAGTATATGAAACAGTGAACTGATACTGTATCCCAACTTTTCATTAAAGGAATTAAACCTTTGTGATGTGCATTCATTCCCGTTATCAAACTCCAACATTTGAATTTTACTGTGATTTTCTACCTGCCTTTTAAACTTCAGAAGCACTTTAGCTACTTCAAACTTCTGCTTCATGAAGTAAATGTTAGAGTTGGTTGAGGTCCACACAAGCCAGTGTGGATGAGCTGCAACTTCTCTCCGTTGTTTTCATTGAATGACAATCTTGTTTGCTTCCACGTCAAACAAGCCATGTAGTCTGTTTTCAACTCCTCTGGAATTGGTACTCCTACACAACTCTCTATTGACACTATGCTCTTCCCTTTCACTTCTAGATACTCACTATTCCCTATCTTCACCCTTGACTTGAATGACTTGTCAAAGTCCTTGAAAAACTCCTTGTCCCCTGTCTTGTGATTTGTTCACCACTATCAACCAACCATCACATTGAGTGGCAGATGAGAAACTAGTAACCACGAGGAGTTGAGCTTCTTGTTATGTTGTAGCATTTACTCCTTGTTGTAGCATTTGCTCCAAGTTCATGTGCCCCATTAAATGACACTTACAGTTCACATCTGGCTTCTCCAGCATCTGAAGTGTGGATGATTATGCTTCCCAAAATGCTTGTATGCATTGTACTTATTGTCCTTGTAACCTGCGAGATCTTACATCGGTTGGGTAGGAGAAACATCATTTTATAAACTTCCTAGTAGACGCATTTTAAAAACCTTGAGAGGAAGTCAGAAAGGGAAAGCCCAAAGTGGGCAATATCTGTTAGCAGTGGGCTTGATCTGTTACAAATGGTATCAGAGCCAGACACCAGACAATGTGCCAGTGAGGAGGCTGAGTCCCAAAAGGGGTGGACACAAGGTGGTGTACCAGTAAGGACGCTGAGCCCTGAAGGAGGTGGATTTGGGGGTCCCACATCGATTAGACAAGGAACCGAGTGCCAGCGAGGACGCTGGGCCCCAAGGGGGTAGATTGTGAAATTCCACATCGATTGGGTAGGAGAAGGAAACATTCTTTATAAGGGTTTGGAAATCTCTCCCTAACCGACGCATTTTAAAAATCTTAGGAAAAACTTGAAAGGTAAAGTCCTCGGCAATATCGAGCTATTAGAGTTAGAGTTAATGCTGCCACTTTTCTTTTTTCCTTTTTCCTTTTTTCCTTTTCCACTTTTTCTTTGCTACGTTCTTATTTCAGTGCCGCCTTGTGTACCAAGGCCATAGTCTTCCTCAATTGCTTCCCAATATTCACAATCCTCAATGTAGACTTCCATTTTGATAGCCCATATTCACAAACCTCTATGTTGGCTTTCATTTTGATAGCCCATATTCACAACCTTCCATGAGGGCATTCATTTTGAATAACCCATGTTTCGTAAGTGTTCTCCATCAAACACAGGTGGAGCTAGTGAAGAAAGACCCTTGTGGCTCAGTCTCACTCAATTCTCATAGATGTATCACTCGGTTTCTCTCAGACATATCTCACTAATTCTCACTCACAACCTCCTTTAAAATTTAAATATGATACCTGTTGCTCCAAAGAGTGGGAGAAGAATTAGAAAAGTGTACCATTTCATTCATTCACAGCTCCCTTTTCTAAATATTAGTAAAGCTTGCCCACCTTATACTTTAGAGCAAGAACACCTATTTCTTCTCTCCCAATATTTTTCTTCACCTTTCTTGGACCTTAATTGTATGTGATGACTTGGGACTTGGGACATGTTTG

mRNA sequence

ATGGATCGGTTCGATGGAGATTCATCCAAATTCAATTGCATTATCACTCAAGAAAGCTTCTCGTCGTTTCATTCCTCACAAGCTTGGTTGAAAGCAAATCCAGCCTCAGATCCAAGGCGGAACCTCCAATTCCGGCCCAGATTACGTCGTAAATGGCGAAGGAGAAGGAGGTATCGCAACGAGAACATTGTATTTGCCGTCGGAATGGTGATGGAGGAATTTAATGCCTATAATTCCATGACGCAGCAGCCGTATTGGCCATGCCCGCACCGCCGTCAACTTCGATGTCGTCTACAGATAATTCAACGGGAAAATGAATTGGAGGAGAATCCAGTGACGTTAAGTGACTGCTTTTGCCCAAGAATATCTTGCGGACATGGCCGATCTCCAGTGCCTTTCTCCTACACATCAACCTTGTGTGTCTGATCACATGGAATAAATCAAGGATATGATGACTCAGGTATGTATCTTTATGCCTACTCAATGATTAATTTTTTTAAGTTTACTTTCTGAAAGTTGCAATTATAAGATTCAAACCAGGGTAGTCCCACAATGAAATCCATTGAAAGATCATCCCATATTCGTTCGGAAATAAACCAACTGGAGCTTCAGTTCCCTCGTTCAATTTGTTTCTCATTGCAACCAAAATAGGATCAATTTGCGGTTGGTCTAAAATTAGCTTCAAATTCATACTTCCAAGCCACACTAATTGCCGTACATTCTAGTGTTTGAGGAAGTCTTGATAAACCATCAGCTGCCCTATTCTCTTTTCCTGGTTTGTGCACAATTTCAATGTTGAATCCCATTAATTTTTTCATCAACTTATGATATTCTCAACCCACCATTCGTTGATCCAATATTAATTTATGATATTCTTCACCTGGGGAACATGAGAAAAGCACAAACAACCGAACACCTTCAAAATTTTCAGGTTTGGTTTGGTATTAAACTAAGTTTCGTAGTGTGTCATCTTCTCCAATACACTTGGAACAACCAAGCACCTTCATATAAAGACTGTTGTGTTTGCTGTTTCAACCCAAAACTCATTCAATAAGTTCCTCTCATGCAACATACCTCTTGTCATCTCCATAATACTCCAGTTCTTCCTCTTAGTAACTCTGTTTTGAATTATAGTATATGAAACAGTGAACTGATACTGTATCCCAACTTTTCATTAAAGGAATTAAACCTTTGTGATGTGCATTCATTCCCGTTATCAAACTCCAACATTTGAATTTTACTGTGATTTTCTACCTGCCTTTTAAACTTCAGAAGCACTTTAGCTACTTCAAACTTCTGCTTCATGAAGTAAATGTTAGAGTTGGTTGAGGTCCACACAAGCCAGTGTGGATGAGCTGCAACTTCTCTCCGTTGTTTTCATTGAATGACAATCTTGTTTGCTTCCACGTCAAACAAGCCATGTAGTCTGTTTTCAACTCCTCTGGAATTGGTACTCCTACACAACTCTCTATTGACACTATGCTCTTCCCTTTCACTTCTAGATACTCACTATTCCCTATCTTCACCCTTGACTTGAATGACTTGTCAAAGTCCTTGAAAAACTCCTTGTCCCCTGTCTTGTGATTTGTTCACCACTATCAACCAACCATCACATTGAGTGGCAGATGAGAAACTAGTAACCACGAGGAGTTGAGCTTCTTGTTATGTTGTAGCATTTACTCCTTGTTGTAGCATTTGCTCCAAGTTCATGTGCCCCATTAAATGACACTTACAGTTCACATCTGGCTTCTCCAGCATCTGAAGTGTGGATGATTATGCTTCCCAAAATGCTTGTATGCATTGTACTTATTGTCCTTGTAACCTGCGAGATCTTACATCGGTTGGGTAGGAGAAACATCATTTTATAAACTTCCTAGTAGACGCATTTTAAAAACCTTGAGAGGAAGTCAGAAAGGGAAAGCCCAAAGTGGGCAATATCTGTTAGCAGTGGGCTTGATCTGTTACAAATGGTATCAGAGCCAGACACCAGACAATGTGCCAGTGAGGAGGCTGAGTCCCAAAAGGGGTGGACACAAGGTGGTGTACCAGTAAGGACGCTGAGCCCTGAAGGAGGTGGATTTGGGGGTCCCACATCGATTAGACAAGGAACCGAGTGCCAGCGAGGACGCTGGGCCCCAAGGGGGTAGATTGTGAAATTCCACATCGATTGGGTAGGAGAAGGAAACATTCTTTATAAGGGTTTGGAAATCTCTCCCTAACCGACGCATTTTAAAAATCTTAGGAAAAACTTGAAAGGTAAAGTCCTCGGCAATATCGAGCTATTAGAGTTAGAGTTAATGCTGCCACTTTTCTTTTTTCCTTTTTCCTTTTTTCCTTTTCCACTTTTTCTTTGCTACGTTCTTATTTCAGTGCCGCCTTGTGTACCAAGGCCATAGTCTTCCTCAATTGCTTCCCAATATTCACAATCCTCAATGTAGACTTCCATTTTGATAGCCCATATTCACAAACCTCTATGTTGGCTTTCATTTTGATAGCCCATATTCACAACCTTCCATGAGGGCATTCATTTTGAATAACCCATGTTTCGTAAGTGTTCTCCATCAAACACAGGTGGAGCTAGTGAAGAAAGACCCTTGTGGCTCAGTCTCACTCAATTCTCATAGATGTATCACTCGGTTTCTCTCAGACATATCTCACTAATTCTCACTCACAACCTCCTTTAAAATTTAAATATGATACCTGTTGCTCCAAAGAGTGGGAGAAGAATTAGAAAAGTGTACCATTTCATTCATTCACAGCTCCCTTTTCTAAATATTAGTAAAGCTTGCCCACCTTATACTTTAGAGCAAGAACACCTATTTCTTCTCTCCCAATATTTTTCTTCACCTTTCTTGGACCTTAATTGTATGTGATGACTTGGGACTTGGGACATGTTTG

Coding sequence (CDS)

ATGGATCGGTTCGATGGAGATTCATCCAAATTCAATTGCATTATCACTCAAGAAAGCTTCTCGTCGTTTCATTCCTCACAAGCTTGGTTGAAAGCAAATCCAGCCTCAGATCCAAGGCGGAACCTCCAATTCCGGCCCAGATTACGTCGTAAATGGCGAAGGAGAAGGAGGTATCGCAACGAGAACATTGTATTTGCCGTCGGAATGGTGATGGAGGAATTTAATGCCTATAATTCCATGACGCAGCAGCCGTATTGGCCATGCCCGCACCGCCGTCAACTTCGATGTCGTCTACAGATAATTCAACGGGAAAATGAATTGGAGGAGAATCCAGTGACGTTAAGTGACTGCTTTTGCCCAAGAATATCTTGCGGACATGGCCGATCTCCAGTGCCTTTCTCCTACACATCAACCTTGTGTGTCTGA

Protein sequence

MDRFDGDSSKFNCIITQESFSSFHSSQAWLKANPASDPRRNLQFRPRLRRKWRRRRRYRNENIVFAVGMVMEEFNAYNSMTQQPYWPCPHRRQLRCRLQIIQRENELEENPVTLSDCFCPRISCGHGRSPVPFSYTSTLCV

Homology

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BLAST of CmaCh04G020690 vs. NCBI nr
Match: KAG7032521.1 (hypothetical protein SDJN02_06570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 89  PHRRQLRCRL---QIIQRENELEENPVTLSDCFCPRISC 125
           P +  +R +L    IIQR+NELEENPVTLSDCFCPRISC
Sbjct: 54  PRQLGVRAKLMIANIIQRKNELEENPVTLSDCFCPRISC 92

The following BLAST results are available for this feature:

BLAST of CmaCh04G020690 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020690 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032521.1	2.0e-04	69.23	hypothetical protein SDJN02_06570, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh04G020690 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020690.1	CmaCh04G020690.1	mRNA