CmaCh04G020690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G020690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 13926891 .. 13931508 (+)
RNA-Seq ExpressionCmaCh04G020690
SyntenyCmaCh04G020690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCGGTTCGAGTATGTGAGTGTGTGGGTCTGGGTCGAAGGATAGGTGAGCCATGGGTTGCAAATGCGAGGTGGGCTGGGGATGTGTAACTTGGTCAAAGAGAGGCTGTTTGATCCAGGATCAATGAACTTTTAAGCTCTATTTAGGAAGCTGTTTAGTGCTGAAGGGATCTAAAATGGGAAGACTTACACTTGATTCCGCAGTGGAGATTCATCCAAATTCAATTGCATTATCACTCAAGAAAGCTTCTCGTCGTTTCATTCCTCACAAGCTTGGTTGAAAGCAAATCCAGCCTCAGATCCAAGGCGGAACCTCCAATTCCGGCCCAGATTACGTCGTAAATGGCGAAGGAGAAGGAGGTATCGCAACGAGAACATTGTATTTGCCGTCGGAATGGTGATGGAGGAATTTAATGCCTATAATTCCATGACGCAGCAGCCGTATTGGCCATGCCCGCACCGCCGTCAACTTCGATGTCGTCTACAGGTTTACCTATTTCTACATTTAGTATCTCTATAATATGCAATTGATTGTAGATACGATCAATTTTTAGATAACGAGGCTGTAAATAGCGTCTGGATATCAAGGTTCCAGGAGTTATATATTACATTACACCTTTCTGGAACTGTTTGGTTTTTATTTGTCTTATTTAGCCTAACTATCAGAGAAAGTAGTCGAACTACTGTTTCTGGTAACTCAGTTCTTCGTTGCTCTGTAAAATTTAGTTAGTCTGTGATTCTGGAACAATTGAAGATGCTCTTTCATTTTTTTAGTGGTGATTTGACTTGTACGAATGAATTAGGTGCCACAAAAAGATGTCAACGATGCTTGATTGATAATTAAAGATTTTGGAGTGGGGATATGAATGTGAGCTGCTAACTGTGAGCCTATAAGCTTGTAGACAATTTGCTAAATACGCATTTTCTCTGGAGTTCTGTAAGGCTCATTACTCTATAATAAACTTTCTGAGTGAGAAAATCTTTACCTCTTCATAATTATTTTCTGAAAAGGATGAGCATCTGTCTAGATGAGCTCTTGAAATAATGTGACAGAAAGAGAGAAAGAGAATGTTAAAGGGCTGAGTTGCCCCGGATAAGTTCGATCAGTTTCTTACTTCTATTTGGACGACTCTGAAGTTATTGCCGAAGACCAATTCAACAAGTGCTAATACAGACGGTCAGAGACAGCAGCAGATAAAAGAGCATCTAGCCCCCTTGGTTGGTTCGGGTCGGTTCTTTCCCTCAAAAAGAATGGAAGTAGGATTCAAGCATCTTTGGGATATTGTATTGTTCACACGTTGATCTATTGGGATATAAGATAGTTAATATTTTAGATGTATAGAATACCTTTGCAGAGTGAATCTTGGAAAATTATTGCAGCACTATGTTGCAATAGGATAGTGAAGGAAAAATACAACTTTGGTTCTCAACAGCCTGATTATATTAGCAGCATCAATTAGGATGAAGTGCCATTTTTTGGTCTTTTGTGCATTTTAGCTACGCTTAGACAGCTTGGAGTCAAAGCTAAGTTAATGATTGCAAATGTTTGTTTTGTGGAAAAGTCTCTAAAGATGCATTTCATGACCAAGAACAACAAACAATACTGGCTATGCTACTACCAATGCAATTTGTTTCTACTGCAATTCATAGAATCATTGTAAGGTGGACCTACCGCTCTTCTTGATCCTCATCTAAATTTCTTATTAATTTTGTTCCCTTTCTACTTAAACTCATTTTGGTTTAGCTTTTTATGTGCTCCTCTGGGAAAGATTTAGCTTTATTGTTTTTATTTGTAATTTTTTTGGAAAGAGATTCTTGAAATGCATAAAGGATGACACGGCAACAATTTTCCGATGGAGGAGTGAGTTAGTTTCTCCTGTGTTGTAGAAAATTTGGAGCCAATACATTTGAATCATCCCATAATTTAGCCTTGGTGACAAGTATAATGTCGTTATTGCTTAATTTTTCTACTCTTAACATTTAGCCTTGAGGTTGCTATTCTAACTATTTAACAGATAATTCAACGGGAAAATGAATTGGAGGAGAATCCAGTGACGTTAAGTGACTGCTTTTGCCCAAGAATATCTTGCGGACATGGCCGATCTCCAGTGCCTTTCTCCTACACATCAACCTTGTGTGTCTGATCACATGGAATAAATCAAGGATATGATGACTCAGGTATGTATCTTTATGCCTACTCAATGATTAATTTTTTTAAGTTTACTTTCTGAAAGTTGCAATTATAAGATTCAAACCAGGGTAGTCCCACAATGAAATCCATTGAAAGATCATCCCATATTCGTTCGGAAATAAACCAACTGGAGCTTCAGTTCCCTCGTTCAATTTGTTTCTCATTGCAACCAAAATAGGATCAATTTGCGGTTGGTCTAAAATTAGCTTCAAATTCATACTTCCAAGCCACACTAATTGCCGTACATTCTAGTGTTTGAGGAAGTCTTGATAAACCATCAGCTGCCCTATTCTCTTTTCCTGGTTTGTGCACAATTTCAATGTTGAATCCCATTAATTTTTTCATCAACTTATGATATTCTCAACCCACCATTCGTTGATCCAATATTAATTTATGATATTCTTCACCTGGGGAACATGAGAAAAGCACAAACAACCGAACACCTTCAAAATTTTCAGGTTTGGTTTGGTATTAAACTAAGTTTCGTAGTGTGTCATCTTCTCCAATACACTTGGAACAACCAAGCACCTTCATATAAAGACTGTTGTGTTTGCTGTTTCAACCCAAAACTCATTCAATAAGTTCCTCTCATGCAACATACCTCTTGTCATCTCCATAATACTCCAGTTCTTCCTCTTAGTAACTCTGTTTTGAATTATAGTATATGAAACAGTGAACTGATACTGTATCCCAACTTTTCATTAAAGGAATTAAACCTTTGTGATGTGCATTCATTCCCGTTATCAAACTCCAACATTTGAATTTTACTGTGATTTTCTACCTGCCTTTTAAACTTCAGAAGCACTTTAGCTACTTCAAACTTCTGCTTCATGAAGTAAATGTTAGAGTTGGTTGAGGTCCACACAAGCCAGTGTGGATGAGCTGCAACTTCTCTCCGTTGTTTTCATTGAATGACAATCTTGTTTGCTTCCACGTCAAACAAGCCATGTAGTCTGTTTTCAACTCCTCTGGAATTGGTACTCCTACACAACTCTCTATTGACACTATGCTCTTCCCTTTCACTTCTAGATACTCACTATTCCCTATCTTCACCCTTGACTTGAATGACTTGTCAAAGTCCTTGAAAAACTCCTTGTCCCCTGTCTTGTGATTTGTTCACCACTATCAACCAACCATCACATTGAGTGGCAGATGAGAAACTAGTAACCACGAGGAGTTGAGCTTCTTGTTATGTTGTAGCATTTACTCCTTGTTGTAGCATTTGCTCCAAGTTCATGTGCCCCATTAAATGACACTTACAGTTCACATCTGGCTTCTCCAGCATCTGAAGTGTGGATGATTATGCTTCCCAAAATGCTTGTATGCATTGTACTTATTGTCCTTGTAACCTGCGAGATCTTACATCGGTTGGGTAGGAGAAACATCATTTTATAAACTTCCTAGTAGACGCATTTTAAAAACCTTGAGAGGAAGTCAGAAAGGGAAAGCCCAAAGTGGGCAATATCTGTTAGCAGTGGGCTTGATCTGTTACAAATGGTATCAGAGCCAGACACCAGACAATGTGCCAGTGAGGAGGCTGAGTCCCAAAAGGGGTGGACACAAGGTGGTGTACCAGTAAGGACGCTGAGCCCTGAAGGAGGTGGATTTGGGGGTCCCACATCGATTAGACAAGGAACCGAGTGCCAGCGAGGACGCTGGGCCCCAAGGGGGTAGATTGTGAAATTCCACATCGATTGGGTAGGAGAAGGAAACATTCTTTATAAGGGTTTGGAAATCTCTCCCTAACCGACGCATTTTAAAAATCTTAGGAAAAACTTGAAAGGTAAAGTCCTCGGCAATATCGAGCTATTAGAGTTAGAGTTAATGCTGCCACTTTTCTTTTTTCCTTTTTCCTTTTTTCCTTTTCCACTTTTTCTTTGCTACGTTCTTATTTCAGTGCCGCCTTGTGTACCAAGGCCATAGTCTTCCTCAATTGCTTCCCAATATTCACAATCCTCAATGTAGACTTCCATTTTGATAGCCCATATTCACAAACCTCTATGTTGGCTTTCATTTTGATAGCCCATATTCACAACCTTCCATGAGGGCATTCATTTTGAATAACCCATGTTTCGTAAGTGTTCTCCATCAAACACAGGTGGAGCTAGTGAAGAAAGACCCTTGTGGCTCAGTCTCACTCAATTCTCATAGATGTATCACTCGGTTTCTCTCAGACATATCTCACTAATTCTCACTCACAACCTCCTTTAAAATTTAAATATGATACCTGTTGCTCCAAAGAGTGGGAGAAGAATTAGAAAAGTGTACCATTTCATTCATTCACAGCTCCCTTTTCTAAATATTAGTAAAGCTTGCCCACCTTATACTTTAGAGCAAGAACACCTATTTCTTCTCTCCCAATATTTTTCTTCACCTTTCTTGGACCTTAATTGTATGTGATGACTTGGGACTTGGGACATGTTTG

mRNA sequence

ATGGATCGGTTCGATGGAGATTCATCCAAATTCAATTGCATTATCACTCAAGAAAGCTTCTCGTCGTTTCATTCCTCACAAGCTTGGTTGAAAGCAAATCCAGCCTCAGATCCAAGGCGGAACCTCCAATTCCGGCCCAGATTACGTCGTAAATGGCGAAGGAGAAGGAGGTATCGCAACGAGAACATTGTATTTGCCGTCGGAATGGTGATGGAGGAATTTAATGCCTATAATTCCATGACGCAGCAGCCGTATTGGCCATGCCCGCACCGCCGTCAACTTCGATGTCGTCTACAGATAATTCAACGGGAAAATGAATTGGAGGAGAATCCAGTGACGTTAAGTGACTGCTTTTGCCCAAGAATATCTTGCGGACATGGCCGATCTCCAGTGCCTTTCTCCTACACATCAACCTTGTGTGTCTGATCACATGGAATAAATCAAGGATATGATGACTCAGGTATGTATCTTTATGCCTACTCAATGATTAATTTTTTTAAGTTTACTTTCTGAAAGTTGCAATTATAAGATTCAAACCAGGGTAGTCCCACAATGAAATCCATTGAAAGATCATCCCATATTCGTTCGGAAATAAACCAACTGGAGCTTCAGTTCCCTCGTTCAATTTGTTTCTCATTGCAACCAAAATAGGATCAATTTGCGGTTGGTCTAAAATTAGCTTCAAATTCATACTTCCAAGCCACACTAATTGCCGTACATTCTAGTGTTTGAGGAAGTCTTGATAAACCATCAGCTGCCCTATTCTCTTTTCCTGGTTTGTGCACAATTTCAATGTTGAATCCCATTAATTTTTTCATCAACTTATGATATTCTCAACCCACCATTCGTTGATCCAATATTAATTTATGATATTCTTCACCTGGGGAACATGAGAAAAGCACAAACAACCGAACACCTTCAAAATTTTCAGGTTTGGTTTGGTATTAAACTAAGTTTCGTAGTGTGTCATCTTCTCCAATACACTTGGAACAACCAAGCACCTTCATATAAAGACTGTTGTGTTTGCTGTTTCAACCCAAAACTCATTCAATAAGTTCCTCTCATGCAACATACCTCTTGTCATCTCCATAATACTCCAGTTCTTCCTCTTAGTAACTCTGTTTTGAATTATAGTATATGAAACAGTGAACTGATACTGTATCCCAACTTTTCATTAAAGGAATTAAACCTTTGTGATGTGCATTCATTCCCGTTATCAAACTCCAACATTTGAATTTTACTGTGATTTTCTACCTGCCTTTTAAACTTCAGAAGCACTTTAGCTACTTCAAACTTCTGCTTCATGAAGTAAATGTTAGAGTTGGTTGAGGTCCACACAAGCCAGTGTGGATGAGCTGCAACTTCTCTCCGTTGTTTTCATTGAATGACAATCTTGTTTGCTTCCACGTCAAACAAGCCATGTAGTCTGTTTTCAACTCCTCTGGAATTGGTACTCCTACACAACTCTCTATTGACACTATGCTCTTCCCTTTCACTTCTAGATACTCACTATTCCCTATCTTCACCCTTGACTTGAATGACTTGTCAAAGTCCTTGAAAAACTCCTTGTCCCCTGTCTTGTGATTTGTTCACCACTATCAACCAACCATCACATTGAGTGGCAGATGAGAAACTAGTAACCACGAGGAGTTGAGCTTCTTGTTATGTTGTAGCATTTACTCCTTGTTGTAGCATTTGCTCCAAGTTCATGTGCCCCATTAAATGACACTTACAGTTCACATCTGGCTTCTCCAGCATCTGAAGTGTGGATGATTATGCTTCCCAAAATGCTTGTATGCATTGTACTTATTGTCCTTGTAACCTGCGAGATCTTACATCGGTTGGGTAGGAGAAACATCATTTTATAAACTTCCTAGTAGACGCATTTTAAAAACCTTGAGAGGAAGTCAGAAAGGGAAAGCCCAAAGTGGGCAATATCTGTTAGCAGTGGGCTTGATCTGTTACAAATGGTATCAGAGCCAGACACCAGACAATGTGCCAGTGAGGAGGCTGAGTCCCAAAAGGGGTGGACACAAGGTGGTGTACCAGTAAGGACGCTGAGCCCTGAAGGAGGTGGATTTGGGGGTCCCACATCGATTAGACAAGGAACCGAGTGCCAGCGAGGACGCTGGGCCCCAAGGGGGTAGATTGTGAAATTCCACATCGATTGGGTAGGAGAAGGAAACATTCTTTATAAGGGTTTGGAAATCTCTCCCTAACCGACGCATTTTAAAAATCTTAGGAAAAACTTGAAAGGTAAAGTCCTCGGCAATATCGAGCTATTAGAGTTAGAGTTAATGCTGCCACTTTTCTTTTTTCCTTTTTCCTTTTTTCCTTTTCCACTTTTTCTTTGCTACGTTCTTATTTCAGTGCCGCCTTGTGTACCAAGGCCATAGTCTTCCTCAATTGCTTCCCAATATTCACAATCCTCAATGTAGACTTCCATTTTGATAGCCCATATTCACAAACCTCTATGTTGGCTTTCATTTTGATAGCCCATATTCACAACCTTCCATGAGGGCATTCATTTTGAATAACCCATGTTTCGTAAGTGTTCTCCATCAAACACAGGTGGAGCTAGTGAAGAAAGACCCTTGTGGCTCAGTCTCACTCAATTCTCATAGATGTATCACTCGGTTTCTCTCAGACATATCTCACTAATTCTCACTCACAACCTCCTTTAAAATTTAAATATGATACCTGTTGCTCCAAAGAGTGGGAGAAGAATTAGAAAAGTGTACCATTTCATTCATTCACAGCTCCCTTTTCTAAATATTAGTAAAGCTTGCCCACCTTATACTTTAGAGCAAGAACACCTATTTCTTCTCTCCCAATATTTTTCTTCACCTTTCTTGGACCTTAATTGTATGTGATGACTTGGGACTTGGGACATGTTTG

Coding sequence (CDS)

ATGGATCGGTTCGATGGAGATTCATCCAAATTCAATTGCATTATCACTCAAGAAAGCTTCTCGTCGTTTCATTCCTCACAAGCTTGGTTGAAAGCAAATCCAGCCTCAGATCCAAGGCGGAACCTCCAATTCCGGCCCAGATTACGTCGTAAATGGCGAAGGAGAAGGAGGTATCGCAACGAGAACATTGTATTTGCCGTCGGAATGGTGATGGAGGAATTTAATGCCTATAATTCCATGACGCAGCAGCCGTATTGGCCATGCCCGCACCGCCGTCAACTTCGATGTCGTCTACAGATAATTCAACGGGAAAATGAATTGGAGGAGAATCCAGTGACGTTAAGTGACTGCTTTTGCCCAAGAATATCTTGCGGACATGGCCGATCTCCAGTGCCTTTCTCCTACACATCAACCTTGTGTGTCTGA

Protein sequence

MDRFDGDSSKFNCIITQESFSSFHSSQAWLKANPASDPRRNLQFRPRLRRKWRRRRRYRNENIVFAVGMVMEEFNAYNSMTQQPYWPCPHRRQLRCRLQIIQRENELEENPVTLSDCFCPRISCGHGRSPVPFSYTSTLCV
Homology
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BLAST of CmaCh04G020690 vs. NCBI nr
Match: KAG7032521.1 (hypothetical protein SDJN02_06570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 89  PHRRQLRCRL---QIIQRENELEENPVTLSDCFCPRISC 125
           P +  +R +L    IIQR+NELEENPVTLSDCFCPRISC
Sbjct: 54  PRQLGVRAKLMIANIIQRKNELEENPVTLSDCFCPRISC 92

The following BLAST results are available for this feature:
BLAST of CmaCh04G020690 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G020690 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G020690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032521.12.0e-0469.23hypothetical protein SDJN02_06570, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh04G020690 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G020690.1CmaCh04G020690.1mRNA