CmaCh04G020560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reverse transcriptase domain-containing protein
Location	Cma_Chr04: 13690312 .. 13692111 (+)
RNA-Seq Expression	CmaCh04G020560
Synteny	CmaCh04G020560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAATCGCATGGATGGGTTGCCAATCACATATCTAATGTTTCGAGTGGCCTCGCTCGAAGAAAGAGTTGCTACTACAAGCAGCTCAAGACCTGCTGGTAGCCCTAATAGCTTTGTCGCGCACGAGGGAGGTGACGAAGAGTTCAACGTGCTACAAAATATCATGATGAGTTTGTTTAATGAATTAGCTGATGAATTTAGAACAACGATCGATGCCATCCAAGAAAAGATGGTCGACATGAACACCCGAATTGAGGTGACCATGAAAGCTGTGGAGAATGTCATGGCTGGGCAAACTCATACAGGATTCAACAAACTGAAGTTCCTAGACCTCAGACCCTTCAATGGGAACCGGGACACCAAAGAGTTGGAGAACTTCATCTTTGATGTCGAATAGTACTTTAAAGCCACAACGGCTTGTACCGACGACATAAAAGTGACAGTAGCATCAATGTATCTCATAGACGATGCAAAACTTTGGTGACGTACGAAGGTGCAAGACATCGAGAATGGATTGTGCACCATCGACTCGTGGAAAGACCTCAAGAGAGAGTTGAGGGACCAATTCTTCCCCGAAAACGTAGAACAAGCAATGGAAAAACTAATAACCCTAAAATAAAATGGAAGCATAAGGAACTATGTCAGACAGTTCTTGACCCTGCTACTAGATATCAGGGGCACGTTAGAGAAAGACAAGGTATTTTTCTTTATAAATGGGTTACAACCGTGGACCAAAACAAAAATACACGAGAAAAAGGTTCAAAACCTAGCTACCACAATTGCCAGCTCCGAGAGACTCCTAGACTTTGGGAACGAAGCGAGTTTCCAAAGAACAACAACACAGGCCTCAAACATTGTGGGCAAAACATATAAACCGCTAGGTCATCAAAATGAAGGCCCCAATAGGCCAAACAAAAGTAATGACAAACTAAGTGGGTGGACAGATAGACCTCTTCAGAATAACCAAGCGGGGACATCTCAAGGACCTTACCCTCAAAAGAACTACCCGACGACACCTTTACAATGCCTGTTGTGTAAAAGCCCCCACAAACTGTTCTATTCTCATTGGGCCTCTCTCAGTGCACTCCAAGTGTCCATTCAAGAGAGCAACGACACAGAAGTCGAGACTACGCCAGACAGGAGGGAAGATCAAGACAACCCCCGAATGGGTGTGCTTAAATTCTTGTCAGCCCTCCAACGAAAGGTCGACCCAAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCAACAATAAACTCCCGACCAAGCAAGAGTACCTTGATAGACTCAGGTGCGACCCACAACTTCATCGCCGACCAAGAAGCACGAAGATTGGGACTCACCATAGAAAAGAACCCCGAAAAAATGAAAGCTGTCAACTTTGAGGCCTTGCCTATTGTGGGAGTCTCCAAAAGAGTCCCCTTCAAATTAGAGGCCTGGATAGGAGAGATGAACCTTGTCGTGGTTTGCATGGACGACTTCGATGTGGTACTTGGGATGGACTTCCTCCTAGAACACAAAGTTATCCCAATGCCACTGGCGAAATACTTGGTGATTTCCGACCACAACCTCAGAGTAATACCTGCAAGCATCAAGCAACCAGATAATCTTAGAATGATCTTGACCATACAATTGAAAAGAGGACTCGCACGAGAGGATCCTACATTTATGGCTATACCCCTAATGGAAGAAATGACCACTGAGGAAACTATTCCAAGCGAAATCAAGGATGTACTAGACAGTTATGCTGAAATAATGCCAGAGAGCTTACCACAAACATTACCACCCCGTTGA

mRNA sequence

ATGAGCAATCGCATGGATGGGTTGCCAATCACATATCTAATGTTTCGAGTGGCCTCGCTCGAAGAAAGAGTTGCTACTACAAGCAGCTCAAGACCTGCTGGTAGCCCTAATAGCTTTGTCGCGCACGAGGGAGGTGACGAAGAGTTCAACGTGCTACAAAATATCATGATGAGTTTGTTTAATGAATTAGCTGATGAATTTAGAACAACGATCGATGCCATCCAAGAAAAGATGGTCGACATGAACACCCGAATTGAGGTGACCATGAAAGCTGTGGAGAATGTCATGGCTGGGCAAACTCATACAGGATTCAACAAACTGAAGTTCCTAGACCTCAGACCCTTCAATGGGAACCGGGACACCAAAGAGTTGGAGAACTTCATCTTTGATGTCGAATATGCACTCCAAGTGTCCATTCAAGAGAGCAACGACACAGAAGTCGAGACTACGCCAGACAGGAGGGAAGATCAAGACAACCCCCGAATGGGTGTGCTTAAATTCTTGTCAGCCCTCCAACGAAAGGTCGACCCAAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCAACAATAAACTCCCGACCAAGCAAGAGTACCTTGATAGACTCAGGTGCGACCCACAACTTCATCGCCGACCAAGAAGCACGAAGATTGGGACTCACCATAGAAAAGAACCCCGAAAAAATGAAAGCTGTCAACTTTGAGGCCTTGCCTATTGTGGGAGTCTCCAAAAGAGTCCCCTTCAAATTAGAGGCCTGGATAGGAGAGATGAACCTTGTCGTGGTTTGCATGGACGACTTCGATGTGGTACTTGGGATGGACTTCCTCCTAGAACACAAAGTTATCCCAATGCCACTGGCGAAATACTTGGTGATTTCCGACCACAACCTCAGAGTAATACCTGCAAGCATCAAGCAACCAGATAATCTTAGAATGATCTTGACCATACAATTGAAAAGAGGACTCGCACGAGAGGATCCTACATTTATGGCTATACCCCTAATGGAAGAAATGACCACTGAGGAAACTATTCCAAGCGAAATCAAGGATGTACTAGACAGTTATGCTGAAATAATGCCAGAGAGCTTACCACAAACATTACCACCCCGTTGA

Coding sequence (CDS)

ATGAGCAATCGCATGGATGGGTTGCCAATCACATATCTAATGTTTCGAGTGGCCTCGCTCGAAGAAAGAGTTGCTACTACAAGCAGCTCAAGACCTGCTGGTAGCCCTAATAGCTTTGTCGCGCACGAGGGAGGTGACGAAGAGTTCAACGTGCTACAAAATATCATGATGAGTTTGTTTAATGAATTAGCTGATGAATTTAGAACAACGATCGATGCCATCCAAGAAAAGATGGTCGACATGAACACCCGAATTGAGGTGACCATGAAAGCTGTGGAGAATGTCATGGCTGGGCAAACTCATACAGGATTCAACAAACTGAAGTTCCTAGACCTCAGACCCTTCAATGGGAACCGGGACACCAAAGAGTTGGAGAACTTCATCTTTGATGTCGAATATGCACTCCAAGTGTCCATTCAAGAGAGCAACGACACAGAAGTCGAGACTACGCCAGACAGGAGGGAAGATCAAGACAACCCCCGAATGGGTGTGCTTAAATTCTTGTCAGCCCTCCAACGAAAGGTCGACCCAAAGGAGATAATAGAGAAAGGGCTCATGTTCGTAGATGCAACAATAAACTCCCGACCAAGCAAGAGTACCTTGATAGACTCAGGTGCGACCCACAACTTCATCGCCGACCAAGAAGCACGAAGATTGGGACTCACCATAGAAAAGAACCCCGAAAAAATGAAAGCTGTCAACTTTGAGGCCTTGCCTATTGTGGGAGTCTCCAAAAGAGTCCCCTTCAAATTAGAGGCCTGGATAGGAGAGATGAACCTTGTCGTGGTTTGCATGGACGACTTCGATGTGGTACTTGGGATGGACTTCCTCCTAGAACACAAAGTTATCCCAATGCCACTGGCGAAATACTTGGTGATTTCCGACCACAACCTCAGAGTAATACCTGCAAGCATCAAGCAACCAGATAATCTTAGAATGATCTTGACCATACAATTGAAAAGAGGACTCGCACGAGAGGATCCTACATTTATGGCTATACCCCTAATGGAAGAAATGACCACTGAGGAAACTATTCCAAGCGAAATCAAGGATGTACTAGACAGTTATGCTGAAATAATGCCAGAGAGCTTACCACAAACATTACCACCCCGTTGA

Protein sequence

MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAHEGGDEEFNVLQNIMMSLFNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNRDTKELENFIFDVEYALQVSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNFIADQEARRLGLTIEKNPEKMKAVNFEALPIVGVSKRVPFKLEAWIGEMNLVVVCMDDFDVVLGMDFLLEHKVIPMPLAKYLVISDHNLRVIPASIKQPDNLRMILTIQLKRGLAREDPTFMAIPLMEEMTTEETIPSEIKDVLDSYAEIMPESLPQTLPPR

Homology

[Close]

BLAST of CmaCh04G020560 vs. ExPASy TrEMBL
Match: A0A6J1IEY4 (uncharacterized protein LOC111475733 OS=Cucurbita maxima OX=3661 GN=LOC111475733 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 6.9e-127
Identity = 292/602 (48.50%), Postives = 323/602 (53.65%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  LMFRV SLEERVA TSS +P+GSP+S VAH EG  EEF+VLQN MMSL
Sbjct: 52  MGNRLDGLPIAELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGEEFDVLQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNR 120
           FN LADEFRTTID IQE+M  M TRIEVTMKAVENV AGQT+TG +KL+F D R F GNR
Sbjct: 112 FNGLADEFRTTIDDIQERMASMGTRIEVTMKAVENVTAGQTNTGSSKLRFPDPRAFKGNR 171

Query: 121 DTKELENFIFDVEY---------------------------------------------- 180
           D KELENFIFDVE                                               
Sbjct: 172 DAKELENFIFDVEQYFKATTACTDDKKVTVASMYLTDDAKLWWRTKVQDIEDGLCTIDSW 231

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 232 EDLKKELRDQFLPENAGHLAMEKLVALKHTGGIRDYVRQFSTLMLDIRGTSEKDKVFFFI 291

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 292 NGLQPWAKTKLHENKVQTLAAAMACVERLLDYGNEAGSQRRITPAPNTGGKPYKPPSHRN 351

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 352 GSPNRPNGGNDRPSGWTDRPPQNNQAGTSREPYHQRNHPTTPLQCMLCKGPHKVSYCPHR 411

Query: 361 ----ALQVSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVD 372
               ALQVSIQESND  VET  D++EDQDNPRMG LKFLSALQRKV+PKEI+EKGLMFVD
Sbjct: 412 VSLTALQVSIQESNDARVETMLDKKEDQDNPRMGALKFLSALQRKVEPKEIVEKGLMFVD 471

[Close]

BLAST of CmaCh04G020560 vs. ExPASy TrEMBL
Match: A0A6J1IA31 (uncharacterized protein LOC111471475 OS=Cucurbita maxima OX=3661 GN=LOC111471475 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91
Identity = 183/225 (81.33%), Postives = 198/225 (88.00%), Query Frame = 0


Query: 147 VETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVDATINSRPSKSTLIDSGA 206
           VET  D++EDQDNPRMG LKFLSALQRKV+PKEIIEKGLMFVDATINSR SKSTLIDSGA
Sbjct: 2   VETMLDKKEDQDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRLSKSTLIDSGA 61

Query: 207 THNFIADQEARRLGLTIEKNPEKMKAVNFEALPIVGVSKRVPFKLEAWIGEMNLVVVCMD 266
           THNFI DQEARRLGLTI K+  KMK VN EALPIVGVSKRVPFK+  W GE++LVVV MD
Sbjct: 62  THNFIVDQEARRLGLTIGKDHGKMKVVNSEALPIVGVSKRVPFKIGDWTGELDLVVVRMD 121

Query: 267 DFDVVLGMDFLLEHKVIPMPLAKYLVISDHNLRVIPASIKQPDNLRMILTIQLKRGLARE 326
             DV+LGM+FLLEHKVIPMPLAK LVI+D N  VIP SIKQP NLRMI  I LKRGLARE
Sbjct: 122 --DVILGMEFLLEHKVIPMPLAKCLVITDRNPTVIPESIKQPGNLRMISAIPLKRGLARE 181

Query: 327 DPTFMAIPLMEEMTTEETIPSEIKDVLDSYAEIMPESLPQTLPPR 372
           +PTFMAIPLMEE TTEETIP+EIK+VL+SY +IMPESLPQTLPPR
Sbjct: 182 EPTFMAIPLMEEATTEETIPNEIKEVLNSYVDIMPESLPQTLPPR 224

[Close]

BLAST of CmaCh04G020560 vs. ExPASy TrEMBL
Match: A0A6J1ID35 (uncharacterized protein LOC111471473 OS=Cucurbita maxima OX=3661 GN=LOC111471473 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.1e-87
Identity = 239/602 (39.70%), Postives = 264/602 (43.85%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  LMFRV SLEERVA TSS +P+GSP+S VAH EG  EEF+VLQN MMSL
Sbjct: 52  MGNRLDGLPIAELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGEEFDVLQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNR 120
           FN LADEFRTTID IQE+M  M TRIEVTMKAVENV AGQ +TG NKL+F D R F  NR
Sbjct: 112 FNGLADEFRTTIDDIQERMASMGTRIEVTMKAVENVTAGQANTGSNKLRFPDPRAFKENR 171

Query: 121 DTKELENFIFDVEY---------------------------------------------- 180
           D KELENFIFDVE                                               
Sbjct: 172 DAKELENFIFDVEQYFKATTACTDDKKVTVASMYLIDDAKLWWRTKVQDIEDGLYTIDSW 231

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 232 EDLKKELRDKFLPENAGHLAMEKLVALKHTGGIRDYVRQFSTLMLDIMGTLEKDKMFFFI 291

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 292 NGLQPWAKTKLHENKVQTLAAAMACAERLLDYGNEAGSQRRITPAPNTGGKPYKPPSHRN 351

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 352 GSPNRPNGGNDRPSGWTDRPPQNNQAGTSRGPYHQRNHPTTPLQCMLCKGPHKVSYCPHR 411

Query: 361 ----ALQVSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVD 372
               ALQVSIQESNDT +ET  D++EDQDNPRMG LKFLSALQRKV+PKEI+EKGL+   
Sbjct: 412 ASLTALQVSIQESNDTRIETMLDKKEDQDNPRMGALKFLSALQRKVEPKEIVEKGLI--- 471

[Close]

BLAST of CmaCh04G020560 vs. ExPASy TrEMBL
Match: A0A6J1IDF7 (uncharacterized protein LOC111474215 OS=Cucurbita maxima OX=3661 GN=LOC111474215 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 2.4e-87
Identity = 239/602 (39.70%), Postives = 267/602 (44.35%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  LMF+V SLEERVA TSS +P+GSP+S VAH EG  EEF+VLQN MMSL
Sbjct: 52  MGNRLDGLPIAELMFQVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGEEFDVLQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNR 120
           FN LADEFRTTID IQE+M  M TRIEVTMKAVENV AGQT+TG NKL+F + R F GNR
Sbjct: 112 FNGLADEFRTTIDDIQERMASMGTRIEVTMKAVENVTAGQTNTGSNKLRFPEPRAFKGNR 171

Query: 121 DTKELENFIFDVEY---------------------------------------------- 180
           D KELENFIFDVE                                               
Sbjct: 172 DAKELENFIFDVEQYFKATTACTDDKKVTVASMYLTDDAKLWWRTKVQDIEDGLCTIDSW 231

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 232 EDLKKELRDQFLPENAGHLAMEKLVALKHTGSIRDYVRQFSTLMLDIRGTSEKDKVFFFI 291

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 292 NGLQPWAKTKLHENKVQTLAAAMACAERLLDYGNEAGSQRRITPAPNTGGKPYKPPSHRN 351

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 352 GSPNRPNGGNDRPSGWTDRPPQNNQAGTSRGPYHQRNHPTTPLQCMLCKGPHKVSYCPHR 411

Query: 361 ----ALQVSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVD 372
               ALQVSIQESND +VET  D++EDQDNPRMG LKFLSALQRKV+PKEI+EKGL+   
Sbjct: 412 ASLTALQVSIQESNDAKVETMLDKKEDQDNPRMGALKFLSALQRKVEPKEIVEKGLI--- 471

[Close]

BLAST of CmaCh04G020560 vs. ExPASy TrEMBL
Match: A0A6J1JPK8 (uncharacterized protein LOC111488689 OS=Cucurbita maxima OX=3661 GN=LOC111488689 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 8.8e-82
Identity = 162/210 (77.14%), Postives = 183/210 (87.14%), Query Frame = 0


Query: 162 MGVLKFLSALQRKVDPKEIIEKGLMFVDATINSRPSKSTLIDSGATHNFIADQEARRLGL 221
           MG  KFLSALQ+KVD +E+IEKGLMFVDATINSRPSKSTLIDSG THNFIAD +ARRLGL
Sbjct: 1   MGAFKFLSALQQKVDTRELIEKGLMFVDATINSRPSKSTLIDSGETHNFIADHKARRLGL 60

Query: 222 TIEKNPEKMKAVNFEALPIVGVSKRVPFKLEAWIGEMNLVVVCMDDFDVVLGMDFLLEHK 281
           TIEK+ EKMK V  +ALPIVG+SKRV FKL AW GE++ VVV M+DF+VVL M FLLEHK
Sbjct: 61  TIEKDLEKMKVVYSKALPIVGISKRVTFKLGAWTGELDFVVVRMNDFNVVLEMGFLLEHK 120

Query: 282 VIPMPLAKYLVISDHNLRVIPASIKQPDNLRMILTIQLKRGLAREDPTFMAIPLMEEMTT 341
           V PMPLAK LVI+DHN  +IPASIKQP NLRMI  IQLKRGL +++PTFMAIPL+EE+TT
Sbjct: 121 VNPMPLAKCLVITDHNPTIIPASIKQPGNLRMISVIQLKRGLTQDEPTFMAIPLIEEVTT 180

Query: 342 EETIPSEIKDVLDSYAEIMPESLPQTLPPR 372
           EE+IPSEIK+VL+SY  IMPESLPQ LPPR
Sbjct: 181 EESIPSEIKEVLESYFNIMPESLPQALPPR 210

[Close]

BLAST of CmaCh04G020560 vs. NCBI nr
Match: XP_023537907.1 (uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464.5 bits (1194), Expect = 8.3e-127
Identity = 294/595 (49.41%), Postives = 321/595 (53.95%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  L+FRV SLEERVA TSS +P+ SP+S VAH EG  EEF++LQN MMSL
Sbjct: 52  MGNRLDGLPIAELLFRVTSLEERVAPTSSPKPSDSPDSSVAHKEGRGEEFDILQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNR 120
           FN LADEFR+T+D +QE+M  M+TRIEVTMKAVE V AGQT TG NKL+F D R F GNR
Sbjct: 112 FNGLADEFRSTVDDLQERMSAMSTRIEVTMKAVEGVTAGQTSTGSNKLRFPDPRAFKGNR 171

Query: 121 DTKELENFIFDVEY---------------------------------------------- 180
           D KELENFIFDVE                                               
Sbjct: 172 DAKELENFIFDVEQYFKATTACTDDKKVTVAAMYLVDDAKLWWRTKVQDIEDGLCTIDSW 231

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 232 EDLKRELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFI 291

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 292 NGLQPWAKTKIHENRVQTLAAAMACAERLVDCGNEAGSQRRATPAPNNGGKPYRPPGHRN 351

Query: 301 ---------------------------------------------------------ALQ 360
                                                                    ALQ
Sbjct: 352 GSPNRSNGWTDRPPQNNQAGTSRGPYHQKNHPTTPLQCMLCKGPHKVSYCPHRASLTALQ 411

Query: 361 VSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVDATINSRP 372
           VSIQESN+  VET  D++ED DNPRMG LKFLSALQRKV+PKEIIEKGLMFVDATINSR 
Sbjct: 412 VSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRL 471

[Close]

BLAST of CmaCh04G020560 vs. NCBI nr
Match: XP_022975706.1 (uncharacterized protein LOC111475733, partial [Cucurbita maxima])

HSP 1 Score: 463.8 bits (1192), Expect = 1.4e-126
Identity = 292/602 (48.50%), Postives = 323/602 (53.65%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  LMFRV SLEERVA TSS +P+GSP+S VAH EG  EEF+VLQN MMSL
Sbjct: 52  MGNRLDGLPIAELMFRVTSLEERVAPTSSPKPSGSPDSSVAHKEGRGEEFDVLQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNR 120
           FN LADEFRTTID IQE+M  M TRIEVTMKAVENV AGQT+TG +KL+F D R F GNR
Sbjct: 112 FNGLADEFRTTIDDIQERMASMGTRIEVTMKAVENVTAGQTNTGSSKLRFPDPRAFKGNR 171

Query: 121 DTKELENFIFDVEY---------------------------------------------- 180
           D KELENFIFDVE                                               
Sbjct: 172 DAKELENFIFDVEQYFKATTACTDDKKVTVASMYLTDDAKLWWRTKVQDIEDGLCTIDSW 231

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 232 EDLKKELRDQFLPENAGHLAMEKLVALKHTGGIRDYVRQFSTLMLDIRGTSEKDKVFFFI 291

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 292 NGLQPWAKTKLHENKVQTLAAAMACVERLLDYGNEAGSQRRITPAPNTGGKPYKPPSHRN 351

Query: 301 ------------------------------------------------------------ 360
                                                                       
Sbjct: 352 GSPNRPNGGNDRPSGWTDRPPQNNQAGTSREPYHQRNHPTTPLQCMLCKGPHKVSYCPHR 411

Query: 361 ----ALQVSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVD 372
               ALQVSIQESND  VET  D++EDQDNPRMG LKFLSALQRKV+PKEI+EKGLMFVD
Sbjct: 412 VSLTALQVSIQESNDARVETMLDKKEDQDNPRMGALKFLSALQRKVEPKEIVEKGLMFVD 471

[Close]

BLAST of CmaCh04G020560 vs. NCBI nr
Match: XP_023524533.1 (uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.8 bits (1187), Expect = 5.4e-126
Identity = 292/595 (49.08%), Postives = 321/595 (53.95%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  L+FRV SLEERVA TSS +P+ SP+S VAH EG  EEF++LQN MMSL
Sbjct: 52  MGNRLDGLPIAELLFRVTSLEERVAPTSSPKPSDSPDSSVAHKEGRGEEFDILQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQTHTGFNKLKFLDLRPFNGNR 120
           FN LADEFR+T+D +QE+M  M+TRIEVTMKAVE V AGQT TG NKL+F D R F GNR
Sbjct: 112 FNGLADEFRSTVDDLQERMSAMSTRIEVTMKAVEGVTAGQTSTGSNKLRFPDPRAFKGNR 171

Query: 121 DTKELENFIFDVEY---------------------------------------------- 180
           D KELENFIFDVE                                               
Sbjct: 172 DAKELENFIFDVEQYFKATTACTDDKKVTVAAMYLVDDAKLWWRTKVQDIEDGLCTIDSW 231

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 232 EDLKRELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQFSTLMLDIRGTAEKDKVFFFI 291

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 292 NGLQPWAKTKIHENRVQTLAAAMACAERLVDCGNEAGSQRRATPAPNNGGKPYRPPGHRN 351

Query: 301 ---------------------------------------------------------ALQ 360
                                                                    ALQ
Sbjct: 352 GSPNRSNGWTDRPPQNNQAGTSRGPYHQKNHPTTPLQCMLCKGPHKVSYCPHRASLTALQ 411

Query: 361 VSIQESNDTEVETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVDATINSRP 372
           VSIQESN+  VET  D++ED DNPRMG LKFLSALQRKV+PKEIIEKGLMFVDATINSR 
Sbjct: 412 VSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRL 471

[Close]

BLAST of CmaCh04G020560 vs. NCBI nr
Match: XP_023526180.1 (uncharacterized protein LOC111789739 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 6.2e-106
Identity = 261/526 (49.62%), Postives = 298/526 (56.65%), Query Frame = 0


Query: 1   MSNRMDGLPITYLMFRVASLEERVATTSSSRPAGSPNSFVAH-EGGDEEFNVLQNIMMSL 60
           M NR+DGLPI  L+FRV SLEERVA TSS +P+ SP+S VAH EG  EEF+VLQN MMSL
Sbjct: 52  MGNRLDGLPIAELLFRVTSLEERVAPTSSPKPSDSPDSSVAHKEGRGEEFDVLQNTMMSL 111

Query: 61  FNELADEFRTTIDAIQEKMVDMNTRIEVTMKAVENVMAGQT------------------- 120
           FN LADEFR+T+D +QE+M  M+TRIEVTMKAVE      T                   
Sbjct: 112 FNGLADEFRSTVDDLQERMAAMSTRIEVTMKAVEGYFKATTACTDDKKVTVAAMYLVDDA 171

Query: 121 --------------------------------------HTGFNKLKFLD--------LRP 180
                                                 H    K+  L         +R 
Sbjct: 172 KLWWRTKVQDIEDGLCTIDSWEDLKRELREQFLPENAGHIAMEKIVALKHTGNIRDYVRQ 231

Query: 181 FN----GNRDTKELENFIFDVEYALQVSIQESNDTEVET--------------------- 240
           F+      R T E +   F +      +  + ++  V+T                     
Sbjct: 232 FSTLMLDIRGTAEKDKVFFFINGLQPWAKTKIHENRVQTLAAAMACAERLVDCGNEAGSQ 291

Query: 241 ----------------------TPDR------REDQDN-----------------PRMGV 300
                                 +P+R      R  Q+N                 P   +
Sbjct: 292 RRATPAPNNGGKPYRPPGHRNGSPNRSNGWTDRPPQNNQAGTSRGPYHQKNHPTTPLQCI 351

Query: 301 L-------------------KFLSALQRKVDPKEIIEKGLMFVDATINSRPSKSTLIDSG 360
           L                   KFLSALQRKV+PKEIIEKGLMFVDATINSR SKSTLIDSG
Sbjct: 352 LCKGPHKTRRKITTTPEWAHKFLSALQRKVEPKEIIEKGLMFVDATINSRLSKSTLIDSG 411

Query: 361 ATHNFIADQEARRLGLTIEKNPEKMKAVNFEALPIVGVSKRVPFKLEAWIGEMNLVVVCM 372
           ATHNFIADQEARRLGLTI K+P KMKAVN EALPIVGVSK VPFK+  W GE++LVVV M
Sbjct: 412 ATHNFIADQEARRLGLTIGKDPGKMKAVNSEALPIVGVSKGVPFKIGDWTGELDLVVVRM 471

[Close]

BLAST of CmaCh04G020560 vs. NCBI nr
Match: XP_022972955.1 (uncharacterized protein LOC111471475 [Cucurbita maxima])

HSP 1 Score: 345.1 bits (884), Expect = 7.4e-91
Identity = 183/225 (81.33%), Postives = 198/225 (88.00%), Query Frame = 0


Query: 147 VETTPDRREDQDNPRMGVLKFLSALQRKVDPKEIIEKGLMFVDATINSRPSKSTLIDSGA 206
           VET  D++EDQDNPRMG LKFLSALQRKV+PKEIIEKGLMFVDATINSR SKSTLIDSGA
Sbjct: 2   VETMLDKKEDQDNPRMGALKFLSALQRKVEPKEIIEKGLMFVDATINSRLSKSTLIDSGA 61

Query: 207 THNFIADQEARRLGLTIEKNPEKMKAVNFEALPIVGVSKRVPFKLEAWIGEMNLVVVCMD 266
           THNFI DQEARRLGLTI K+  KMK VN EALPIVGVSKRVPFK+  W GE++LVVV MD
Sbjct: 62  THNFIVDQEARRLGLTIGKDHGKMKVVNSEALPIVGVSKRVPFKIGDWTGELDLVVVRMD 121

Query: 267 DFDVVLGMDFLLEHKVIPMPLAKYLVISDHNLRVIPASIKQPDNLRMILTIQLKRGLARE 326
             DV+LGM+FLLEHKVIPMPLAK LVI+D N  VIP SIKQP NLRMI  I LKRGLARE
Sbjct: 122 --DVILGMEFLLEHKVIPMPLAKCLVITDRNPTVIPESIKQPGNLRMISAIPLKRGLARE 181

Query: 327 DPTFMAIPLMEEMTTEETIPSEIKDVLDSYAEIMPESLPQTLPPR 372
           +PTFMAIPLMEE TTEETIP+EIK+VL+SY +IMPESLPQTLPPR
Sbjct: 182 EPTFMAIPLMEEATTEETIPNEIKEVLNSYVDIMPESLPQTLPPR 224

The following BLAST results are available for this feature:

BLAST of CmaCh04G020560 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEY4	6.9e-127	48.50	uncharacterized protein LOC111475733 OS=Cucurbita maxima OX=3661 GN=LOC111475733...	[more]
A0A6J1IA31	3.6e-91	81.33	uncharacterized protein LOC111471475 OS=Cucurbita maxima OX=3661 GN=LOC111471475...	[more]
A0A6J1ID35	1.1e-87	39.70	uncharacterized protein LOC111471473 OS=Cucurbita maxima OX=3661 GN=LOC111471473...	[more]
A0A6J1IDF7	2.4e-87	39.70	uncharacterized protein LOC111474215 OS=Cucurbita maxima OX=3661 GN=LOC111474215...	[more]
A0A6J1JPK8	8.8e-82	77.14	uncharacterized protein LOC111488689 OS=Cucurbita maxima OX=3661 GN=LOC111488689...	[more]

BLAST of CmaCh04G020560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537907.1	8.3e-127	49.41	uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]	[more]
XP_022975706.1	1.4e-126	48.50	uncharacterized protein LOC111475733, partial [Cucurbita maxima]	[more]
XP_023524533.1	5.4e-126	49.08	uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]	[more]
XP_023526180.1	6.2e-106	49.62	uncharacterized protein LOC111789739 [Cucurbita pepo subsp. pepo]	[more]
XP_022972955.1	7.4e-91	81.33	uncharacterized protein LOC111471475 [Cucurbita maxima]	[more]

BLAST of CmaCh04G020560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF08284	RVP_2	coord: 191..282 e-value: 1.4E-11 score: 44.4
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 188..277 e-value: 3.05136E-17 score: 74.2952
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 169..304 e-value: 7.3E-21 score: 76.3
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 181..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020560.1	CmaCh04G020560.1	mRNA