CmaCh04G020480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CLAVATA3/ESR (CLE)-related protein 27
Location	Cma_Chr04: 13442411 .. 13442677 (+)
RNA-Seq Expression	CmaCh04G020480
Synteny	CmaCh04G020480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGACGGCGTCACTCCCACCCGGCAGCGCCCATTTCTCTCTACTTTCTTGGTTATGGCTTTATTCATCTGGGTCGTCTTCTGCCACCAACCCGGCGCCGTCTCTGCCAGACTCTTCCCGGAGAATCTAATTCCAGAGGAAACCCACGTGGGCGGCGGTGGAGGAAGCAAGGAGAAGTTGCTCCGAAAGTATTCCAATGGAACGAGAGGATTCGAAGACAACAAACGAACAGTCCCCAGCTGCCCGGATCCTCTGCACAACTAG

mRNA sequence

ATGTGTGACGGCGTCACTCCCACCCGGCAGCGCCCATTTCTCTCTACTTTCTTGGTTATGGCTTTATTCATCTGGGTCGTCTTCTGCCACCAACCCGGCGCCGTCTCTGCCAGACTCTTCCCGGAGAATCTAATTCCAGAGGAAACCCACGTGGGCGGCGGTGGAGGAAGCAAGGAGAAGTTGCTCCGAAAGTATTCCAATGGAACGAGAGGATTCGAAGACAACAAACGAACAGTCCCCAGCTGCCCGGATCCTCTGCACAACTAG

Coding sequence (CDS)

ATGTGTGACGGCGTCACTCCCACCCGGCAGCGCCCATTTCTCTCTACTTTCTTGGTTATGGCTTTATTCATCTGGGTCGTCTTCTGCCACCAACCCGGCGCCGTCTCTGCCAGACTCTTCCCGGAGAATCTAATTCCAGAGGAAACCCACGTGGGCGGCGGTGGAGGAAGCAAGGAGAAGTTGCTCCGAAAGTATTCCAATGGAACGAGAGGATTCGAAGACAACAAACGAACAGTCCCCAGCTGCCCGGATCCTCTGCACAACTAG

Protein sequence

MCDGVTPTRQRPFLSTFLVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEKLLRKYSNGTRGFEDNKRTVPSCPDPLHN

Homology

[Close]

BLAST of CmaCh04G020480 vs. ExPASy TrEMBL
Match: A0A5A7VDX3 (Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00690 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.8e-13
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 4  GVTPTRQRPFLSTFLVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEKLLR 63
          G TP+R+R  LS F ++  FIWVV  +Q  +  AR   E+  P+     G  GSKEK   
Sbjct: 5  GATPSRRRRLLSYFFIILFFIWVVVGNQAASAMARPLEESENPDM----GAVGSKEKYFN 64

Query: 64 KYSNGTRGFEDNKRTVPSCPDPLHN 89
            S G+R FE+NKRTVPSCPDPLHN
Sbjct: 65 GRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of CmaCh04G020480 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.4e-07
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 14  LSTFLVMALFIWVVFCHQPGAVSARLFPENLIPEETH-----VGGGGGSKEKLLRKYSNG 73
           L  FL+  L IWV  C    A + R+FP+N +P +             +K+ LLRK+ NG
Sbjct: 19  LVVFLIFMLQIWV--CSDCKAGAIRIFPDNGMPSKLKHRNITTTDNKATKQDLLRKFFNG 78

Query: 74  --------TRGFEDNKRTVPSCPDPLHN 89
                    +GFE+NKR VPSCPDPLHN
Sbjct: 79  RASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of CmaCh04G020480 vs. ExPASy TrEMBL
Match: A0A2I4HTU3 (CLAVATA3/ESR (CLE)-related protein 27 OS=Juglans regia OX=51240 GN=LOC109021401 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 19 VMALFIWVVFCHQPGAVSARLFPENLIPEETHVGG--GGG-----SKEKLLRKYSNG--T 78
          V+ +++W  +  Q GA+  R+ P + I +   VGG  GGG     SKE L+RK+ NG   
Sbjct: 23 VLQIWVWCEYSCQAGAI--RILPGHGIAKVMKVGGSHGGGMVKKRSKEDLVRKHFNGRTD 82

Query: 79 RGFEDNKRTVPSCPDPLHN 89
            FE+NKR VPSCPDPLHN
Sbjct: 83 NRFEENKRKVPSCPDPLHN 99

[Close]

BLAST of CmaCh04G020480 vs. ExPASy TrEMBL
Match: A0A2C9UKL3 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.1e-06
Identity = 37/88 (42.05%), Postives = 44/88 (50.00%), Query Frame = 0


Query: 14  LSTFLVMALFIWVVFCHQPGAVSARLFPE-----NLIPEETHVGGGGGSKEKLLRKYSNG 73
           L  FL+  L IWV  C    A + R+FP+     NL            SKE L  K+ NG
Sbjct: 19  LVVFLIFVLQIWV--CSDCKAGAIRIFPDNGMAPNLKQRNISTTDNKDSKEDLFHKFFNG 78

Query: 74  --------TRGFEDNKRTVPSCPDPLHN 89
                    +GFE+NKR VPSCPDPLHN
Sbjct: 79  RQYSFNTTKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of CmaCh04G020480 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-05
Identity = 35/83 (42.17%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 18 LVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGG----SKEKLLRKYSNG----- 77
          ++  L IWV   +   A + R+ P N   + T  G  G     +KE+LLRKY NG     
Sbjct: 10 IIPVLQIWVCCEYSCQAGAIRIHPGNGEAKVTKEGSRGSLDKKNKEELLRKYFNGRTFGF 69

Query: 78 ---TRGFEDNKRTVPSCPDPLHN 89
               GFE++KR VPSCPDPLHN
Sbjct: 70 NRTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of CmaCh04G020480 vs. NCBI nr
Match: KAG6601785.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032500.1 CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 83/88 (94.32%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MCDGVTPTRQRPFLSTFLVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEK 60
          MC GVTPTRQR FLST LVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEK
Sbjct: 1  MCGGVTPTRQRRFLSTLLVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEK 60

Query: 61 LLRKYSNGTRGFEDNKRTVPSCPDPLHN 89
          LLRKY NG RGFEDNKRTVPSCPDPLHN
Sbjct: 61 LLRKYFNGMRGFEDNKRTVPSCPDPLHN 88

[Close]

BLAST of CmaCh04G020480 vs. NCBI nr
Match: KAG6579278.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-18
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 7   PTRQRPFLSTFLVMALFIWVVFCH--QPGAVSARLFPENLIPEETHVGGGGGSKEKLLRK 66
           P R+R FLS+F ++  FIWVVFCH        AR FP N  PE++ V GG GSKEKLLR 
Sbjct: 15  PRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQS-VSGGAGSKEKLLRT 74

Query: 67  YSN----GTRGFEDNKRTVPSCPDPLHN 89
           Y N    G+RGF++ KRTVPSCPDPLHN
Sbjct: 75  YFNGRSFGSRGFQEKKRTVPSCPDPLHN 101

[Close]

BLAST of CmaCh04G020480 vs. NCBI nr
Match: KAG7016789.1 (hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-18
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 7  PTRQRPFLSTFLVMALFIWVVFCH--QPGAVSARLFPENLIPEETHVGGGGGSKEKLLRK 66
          P R+R FLS+F ++  FIWVVFCH        AR FP N  PE++ V GG GSKEKLLR 
Sbjct: 9  PRRRRRFLSSFFLLIFFIWVVFCHHRHQATAVARPFPGNQKPEQS-VSGGAGSKEKLLRT 68

Query: 67 YSN----GTRGFEDNKRTVPSCPDPLHN 89
          Y N    G+RGF++ KRTVPSCPDPLHN
Sbjct: 69 YFNGRSFGSRGFQEKKRTVPSCPDPLHN 95

[Close]

BLAST of CmaCh04G020480 vs. NCBI nr
Match: KAA0063931.1 (putative Clavata3/esr-related 43 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 4  GVTPTRQRPFLSTFLVMALFIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEKLLR 63
          G TP+R+R  LS F ++  FIWVV  +Q  +  AR   E+  P+     G  GSKEK   
Sbjct: 5  GATPSRRRRLLSYFFIILFFIWVVVGNQAASAMARPLEESENPDM----GAVGSKEKYFN 64

Query: 64 KYSNGTRGFEDNKRTVPSCPDPLHN 89
            S G+R FE+NKRTVPSCPDPLHN
Sbjct: 65 GRSLGSREFEENKRTVPSCPDPLHN 85

[Close]

BLAST of CmaCh04G020480 vs. NCBI nr
Match: XP_040998166.1 (CLAVATA3/ESR (CLE)-related protein 27-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 38/79 (48.10%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 19 VMALFIWVVFCHQPGAVSARLFPENLIPEETHVGG--GGG-----SKEKLLRKYSNG--T 78
          V+ +++W  +  Q GA+  R+ P N I +   VGG  GGG     SKE L+RK+ NG   
Sbjct: 23 VLQIWVWCEYSCQAGAI--RILPGNGIAKVMKVGGSHGGGMVKKSSKEDLVRKHFNGRTD 82

Query: 79 RGFEDNKRTVPSCPDPLHN 89
            FE+NKR VPSCPDPLHN
Sbjct: 83 NRFEENKRKVPSCPDPLHN 99

[Close]

BLAST of CmaCh04G020480 vs. TAIR 10
Match: AT3G25905.1 (CLAVATA3/ESR-RELATED 27 )

HSP 1 Score: 43.5 bits (101), Expect = 1.0e-04
Identity = 30/91 (32.97%), Postives = 44/91 (48.35%), Query Frame = 0


Query: 11 RPFLSTFLVMAL---FIWVVFCHQPGAVSARLFPENLIPEETHVGGGGGSKEKLLRKY-- 70
          R  L+T L+M +   ++  +FC      + R+FPE           G   +E L++KY  
Sbjct: 8  RSSLTTTLLMVILLSYMLHLFCVYSRVGAIRIFPET-------PASGKRQEEDLMKKYFG 67

Query: 71 --------SNGTRGFEDNKRTVPSCPDPLHN 89
                  S   +G  ++KR VPSCPDPLHN
Sbjct: 68 AGKFPPVDSFVGKGISESKRIVPSCPDPLHN 91

The following BLAST results are available for this feature:

BLAST of CmaCh04G020480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDX3	7.8e-13	50.59	Putative Clavata3/esr-related 43 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A2C9VNI0	8.4e-07	42.05	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A2I4HTU3	1.1e-06	46.84	CLAVATA3/ESR (CLE)-related protein 27 OS=Juglans regia OX=51240 GN=LOC109021401 ...	[more]
A0A2C9UKL3	7.1e-06	42.05	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G102600 PE=4 SV=...	[more]
A0A6A1W705	2.7e-05	42.17	CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01...	[more]

BLAST of CmaCh04G020480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601785.1	2.8e-41	94.32	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG6579278.1	4.4e-18	59.09	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7016789.1	4.4e-18	59.09	hypothetical protein SDJN02_21899, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0063931.1	1.6e-12	50.59	putative Clavata3/esr-related 43 [Cucumis melo var. makuwa]	[more]
XP_040998166.1	6.0e-07	48.10	CLAVATA3/ESR (CLE)-related protein 27-like [Juglans microcarpa x Juglans regia]	[more]

BLAST of CmaCh04G020480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25905.1	1.0e-04	32.97	CLAVATA3/ESR-RELATED 27	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020480.1	CmaCh04G020480.1	mRNA