CmaCh04G020350 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein
Location	Cma_Chr04: 13072801 .. 13073693 (+)
RNA-Seq Expression	CmaCh04G020350
Synteny	CmaCh04G020350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTGTGCATCTTTATCTTGGGTGTTCTTCTGTCGTGCGACCTGGTGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTTGTTCAAGGCGGGCAATGTGAACTTTGATTCGATCCGGGTATTCAATCCCGCCGCTGAGATGCTTAGTTGACTCCTTAACCTTGATAGGAAGATGGCTTATTCAATAATTCGTGCATAAGGGGAAGGAACTTTGGATGAACTAATGCGAATGGATGTAAGCCTCGCAGCTCGGAAACACCCAATGCTGACAACACTGAGAGAGATGAAAGCGCAAGTAACGCCAGTTGGCGAAATGGCGTTAAGCATCCCTAGCGGTATGAAAAGAGAGGTCGTGATGATATCATCTACGTCTATACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACAGGAGAATTCCCACTACCGCAGGCAGGCCAGCCGGGCCATGAGCGCGGTGGGAACGTGCTTCCCAAAAAGCCAGCCTGGGGATGGAGTCAGCATAGAATGAAGGGGATGAACCTAATCTTGTGTTGGCAAAGCCAACTTCTTGGGGTGCGGGTGGAGAAGAGCAGACATGGGGACTCGGGGCAGGGCACAACGTAACTAAGAGAAAGAGAGCCATTCCATTTAGGGCGAGCCCGCTTATTAGATTAGTATTAGCCGCCTATCCCGAAAGAAAATGGGATAATAGAAAGAACGGGAAGACTGGGAACTATAGGATTGGGTTTCCCCGACCGACAGCTGCTAGGTTTACCCATCTCTCCTAAACTTGCCCCGGTCTGCGGCCCGAGCTATTTGAGGCAAAAACTCGTCTCACGTATGGTTCGGAGGCCAAGCCCCACCAATAATGGTGCGGCTTAG

mRNA sequence

ATGGAGGAGTGTGCATCTTTATCTTGGGTGTTCTTCTGTCGTGCGACCTGGTGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTTGTTCAAGGCGGGCAATGTGAACTTTGATTCGATCCGGCTGCTAGGTTTACCCATCTCTCCTAAACTTGCCCCGGTCTGCGGCCCGAGCTATTTGAGGCAAAAACTCGTCTCACGTATGGTTCGGAGGCCAAGCCCCACCAATAATGGTGCGGCTTAG

Coding sequence (CDS)

ATGGAGGAGTGTGCATCTTTATCTTGGGTGTTCTTCTGTCGTGCGACCTGGTGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTTGTTCAAGGCGGGCAATGTGAACTTTGATTCGATCCGGCTGCTAGGTTTACCCATCTCTCCTAAACTTGCCCCGGTCTGCGGCCCGAGCTATTTGAGGCAAAAACTCGTCTCACGTATGGTTCGGAGGCCAAGCCCCACCAATAATGGTGCGGCTTAG

Protein sequence

MEECASLSWVFFCRATWWLMCDLWPTPPICLFKAGNVNFDSIRLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPTNNGAA

Homology

[Close]

BLAST of CmaCh04G020350 vs. ExPASy TrEMBL
Match: A0A2G2WU53 (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Capsicum baccatum OX=33114 GN=CQW23_12973 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   MEECASLSWVFFCRATWWLMCDLWPTPPI 30
           MEECASL WVFFC AT WLMC+LWPTPPI
Sbjct: 274 MEECASLCWVFFCCATRWLMCNLWPTPPI 302

[Close]

BLAST of CmaCh04G020350 vs. ExPASy TrEMBL
Match: A0A7J0DAS0 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0015910 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-06
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 43  RLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPT 78
           +LLGLPISPKL PV GPS +RQKLVSR VRRPSPT
Sbjct: 388 QLLGLPISPKLPPVFGPSCMRQKLVSRTVRRPSPT 422

[Close]

BLAST of CmaCh04G020350 vs. ExPASy TrEMBL
Match: A0A7T0KBQ7 (Cytochrome c biogenesis protein ccmFC OS=Aquilaria sinensis OX=210372 GN=ccmFC PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 43  RLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPT 78
           +LLGLPISPKL PV GPS +RQKLV R VRRPSPT
Sbjct: 275 KLLGLPISPKLPPVFGPSCMRQKLVPRTVRRPSPT 309

[Close]

BLAST of CmaCh04G020350 vs. ExPASy TrEMBL
Match: A0A6J5X9C7 (CcmF_C domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS26480 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 43 RLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPT 78
          +LLGLPISPKL PV GPS +RQKLV R VRRPSPT
Sbjct: 34 QLLGLPISPKLPPVFGPSCMRQKLVPRTVRRPSPT 68

[Close]

BLAST of CmaCh04G020350 vs. ExPASy TrEMBL
Match: A0A6J5UM80 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS26812 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 43 RLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPT 78
          +LLGLPISPKL PV GPS +RQKLV R VRRPSPT
Sbjct: 34 QLLGLPISPKLPPVFGPSCMRQKLVPRTVRRPSPT 68

[Close]

BLAST of CmaCh04G020350 vs. NCBI nr
Match: KAG9438405.1 (hypothetical protein H6P81_021645 [Aristolochia fimbriata])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 27/33 (81.82%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 2   EECASLSWVFFCRATWWLMCDLWPTPPICLFKA 35
           EECASL WVFFCRAT  LMCDLWPTPPIC  +A
Sbjct: 244 EECASLCWVFFCRATRRLMCDLWPTPPICSGRA 276

[Close]

BLAST of CmaCh04G020350 vs. NCBI nr
Match: PHT48765.1 (Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein [Capsicum baccatum])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   MEECASLSWVFFCRATWWLMCDLWPTPPI 30
           MEECASL WVFFC AT WLMC+LWPTPPI
Sbjct: 274 MEECASLCWVFFCCATRWLMCNLWPTPPI 302

[Close]

BLAST of CmaCh04G020350 vs. NCBI nr
Match: QVJ97915.1 (hypothetical protein [Apium graveolens])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 35/68 (51.47%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 14 RATWWLMCDLWPTPPICLFKAGNVNFDSIR----LLGLPISPKLAPVCGPSYLRQKLVSR 73
          + TW L      T     F+A       +R    LLGLPISPKL PV GPS +RQKLV R
Sbjct: 20 KRTWGLGAGRSVTKRAIPFRARESGRSGVRPDWQLLGLPISPKLPPVFGPSCMRQKLVPR 79

Query: 74 MVRRPSPT 78
           VRRPSPT
Sbjct: 80 TVRRPSPT 87

[Close]

BLAST of CmaCh04G020350 vs. NCBI nr
Match: XP_028063424.1 (uncharacterized protein LOC114266701 [Camellia sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 43 RLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPT 78
          +LLGLPISPKL PV GPS +RQKLVSR VRRPSPT
Sbjct: 37 QLLGLPISPKLPPVFGPSCMRQKLVSRTVRRPSPT 71

[Close]

BLAST of CmaCh04G020350 vs. NCBI nr
Match: GFS31153.1 (hypothetical protein Acr_00g0015910 [Actinidia rufa])

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-05
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 43  RLLGLPISPKLAPVCGPSYLRQKLVSRMVRRPSPT 78
           +LLGLPISPKL PV GPS +RQKLVSR VRRPSPT
Sbjct: 388 QLLGLPISPKLPPVFGPSCMRQKLVSRTVRRPSPT 422

The following BLAST results are available for this feature:

BLAST of CmaCh04G020350 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G020350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2WU53	1.7e-06	86.21	Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Capsicum b...	[more]
A0A7J0DAS0	6.6e-06	82.86	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0015910 PE=4 SV=1	[more]
A0A7T0KBQ7	1.9e-05	80.00	Cytochrome c biogenesis protein ccmFC OS=Aquilaria sinensis OX=210372 GN=ccmFC P...	[more]
A0A6J5X9C7	2.5e-05	80.00	CcmF_C domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS...	[more]
A0A6J5UM80	2.5e-05	80.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS26812 PE=4 S...	[more]

BLAST of CmaCh04G020350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG9438405.1	1.2e-06	81.82	hypothetical protein H6P81_021645 [Aristolochia fimbriata]	[more]
PHT48765.1	3.6e-06	86.21	Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein [Capsicum bac...	[more]
QVJ97915.1	1.4e-05	51.47	hypothetical protein [Apium graveolens]	[more]
XP_028063424.1	1.4e-05	82.86	uncharacterized protein LOC114266701 [Camellia sinensis]	[more]
GFS31153.1	1.4e-05	82.86	hypothetical protein Acr_00g0015910 [Actinidia rufa]	[more]

BLAST of CmaCh04G020350 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020350.1	CmaCh04G020350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding