CmaCh04G020330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal protein S3
Location	Cma_Chr04: 13065131 .. 13067689 (+)
RNA-Seq Expression	CmaCh04G020330
Synteny	CmaCh04G020330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTTATGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGAAGAGTTTACTTCGACACAGAAACGAAGACTTTCGAGAACAAATGGACCGGGAAAAAAAAGGGGAGAAAGTCGAGTCTAAACGCATATGGCACGAAAAGGAAATCTGATTTCGGTAAGACTTGATCTGAATCGTAGTTTAGATTCAAGTCGGTTCAGTGAGGGCGACCGCGAAAGTCACCGAATGGGTCAGTCTTTTCCTTCAGTTTGTCCTATATTGAAAATAAAAAAAAGCATGGGAGGACATTGCAGATGTCCAGGACGGACACAACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCCGAGACCAGAGCATGTCGTGAAAGAAGCACACTGGTCGTGCTTCGACTGTGTCTCTGAGGCACAATTGAATGTAGATATCATGAACGCAAGGTACAGGATACCAGGCCGAGAAACCTGGGCAACCACTCCCCTATGTGCTGATCGCTAGCACATCTAGGGCCCCGGCGCCCAGCGGAGCTGGAGAGGCCTAGCCTGATCGGAGAAGTGCTAATTCGGTTCGTCTCGACTTCATTCAAGAACACCACCCCTGGAATCAATAAGAAAACAAGTGCTAAGTTTCAGATCAGTGAATAAACCGAAACGAAAGAAGAGACGTTTCTCGCTCAGTGCCTAAAGCGCACTATGCTCCCCTTCAACAAATGAGAGTTTTCGGTGGAACAGGTGAACCACGCGAGCAGGCAGGTTAGATGCGTGGGACAGAGGGCTCGTAGTACCTACTAGCGCAGCTATGCATTGGAAGGGAAGGAGCCTAAATTGACCCCCTTTTTTCTTTGATAAAAAAAATAGTACAAAGAGATTAGACTTGCGAATGAGACTAAGCAGCCACCAACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCAAACAAACAAAACCTATAAAAAATGGAGCCTAGTTTAAGCTGTCAAAAAAATAAATGAGAGAATGGAAAATGATGAATATCCACTAGTAGGGATATATATAGATGGAGTCTCTCTCAGTAAAGAGAGTTGTAGATTCGTAGGAAAGGAAAGGAGTGAAGCTGCTTTACCGAGGGGAGAAGAGCCTTGAGAACCTATTAGTAAAGCGCTAATGCGCCCCTGCCATCTTTTTAAAGCAACAAGCGAGAAAGTTGCCCCTTTTTCAATAACAAAAAAGGAAAGAAAGAAAGAAGAAGGGCCAACCAACTATTAGAATATTAGTAAAGGCGCCTTAGCCTATCTCTCGATATAGTCAGGGGCCTTTTCTTGCTCGTTAGCGCTCCCTTCCTTACCCCCCTATAAAAGGTTTTGCATAAAGGTAGCTTGTCTACGCCTTATGAAAACCTGACTCTGACTACTAATAATAATGAAGGGGCTTCTTTCTTCAAATATCCTATAAAAAAAGTTGAGGCTGAAAAGCTTTGAGTTTAGGGCAGGTTTGGAACCCTATACAAGGGGCTTTTCCTTTCAAATGACACCTCTTCTTGTGCGAGGGCGTTGCACGAAACCAAACCGCTCCCCCGCCCGATCAGGTACCTGTTGCTTTGCTGGTAGGCCGACTTAGGTTAGAGGGCATTGTCCCTCAGTTCTTACCAACCTCCGGTGTATAATCGACATGTTGCTAGCTTCAACTCGGTGGAATAAGAATCATTGATTCCCTTGTCTATTTCTTATTCATTTAGAGCGTTCGGCCGGTGCGTGCTCCTTTCTCAAACCATAACAACTCTGAACGTTAGGGAAGATAAGGGAAGACCACCTGAGCGAACCGACCGAAGGGACTTGACTTATTCGAACCGAAGGATAGCGGCTTCAAACTCAGCCTATCATGAGTAGCCTCGCTGCTTGATCGGCGGGGAGGAGAATCTCAAAGTATGGGGCAAAGGATCAAGCGCTTTGACTTTGTCTCCCGGGGGGATCCACCACATGTTGGGTTTGAGAGTCGTGTGATGGGTGACTATCCAGCACGGTTCGGAGAGCAAGCACTTTTAGTCTATGTTGGTGAATAGAAGCCCCCCCTATCAAGTCAAGCAAGAAAGAAGCGGCTCTTCCCACGGCGGAGTCGCCATTGAATCTATTTATTATTATGGTAAATCACTGTATCAAGATGTCAATTTGAGATCTTATTTTGGTTCGATACGTCCACCTACGAGACTGCCCTTTGACTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGATTGAAACGACGCACAAAATCCAAACCCGAAAAGGATCAGGGCCGATGGTGGGCATTTGGGAATGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGACTGCGAAAAGCAAAACGAAATGAGGATTTGGCCGAAAAAGAAGGAACGCTATGGATACCTTGACCGATCACCATCGAGAAAGAAGAATCTTTCTTAA

mRNA sequence

ATGGAAAAACTTATGTTCGTTGTAAGATCACTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGATTGAAACGACGCACAAAATCCAAACCCGAAAAGGATCAGGGCCGATGGTGGGCATTTGGGAATGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGACTGCGAAAAGCAAAACGAAATGAGGATTTGGCCGAAAAAGAAGGAACGCTATGGATACCTTGACCGATCACCATCGAGAAAGAAGAATCTTTCTTAA

Coding sequence (CDS)

ATGGAAAAACTTATGTTCGTTGTAAGATCACTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGATTGAAACGACGCACAAAATCCAAACCCGAAAAGGATCAGGGCCGATGGTGGGCATTTGGGAATGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGACTGCGAAAAGCAAAACGAAATGAGGATTTGGCCGAAAAAGAAGGAACGCTATGGATACCTTGACCGATCACCATCGAGAAAGAAGAATCTTTCTTAA

Protein sequence

MEKLMFVVRSLKEGCIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEERNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS

Homology

[Close]

BLAST of CmaCh04G020330 vs. ExPASy Swiss-Prot
Match: Q04716 (Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.6e-47
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRW AFG VGPIGCLHSSD TEEER
Sbjct: 59  CIILHFPKRTFIHFFLPRRPRRLKRREKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEER 118

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESIRLDD EKQNE+RIWPKKK+ YGY DRSPS KKNLS
Sbjct: 119 NEVRGRGAGKRVESIRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLS 168

[Close]

BLAST of CmaCh04G020330 vs. ExPASy Swiss-Prot
Match: P27754 (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 5.6e-46
Identity = 90/110 (81.82%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKR  KS+P K++ RWW FG VGPIGCLHS+DDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKARWWEFGKVGPIGCLHSNDDTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEV GR A KRVESIRLDD EKQNE+RIWPKKK+ YGY DRSPS KKNLS
Sbjct: 120 NEVGGRGAGKRVESIRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. ExPASy Swiss-Prot
Match: P46773 (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.2e-45
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRP RLKRR KS+P KD+GRWWAFG VGPIGCLHSS+ TEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESI   D EKQNE+RIWPKK +RYGY DRSPSRKKN S
Sbjct: 120 NEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRYGYHDRSPSRKKNFS 166

[Close]

BLAST of CmaCh04G020330 vs. ExPASy Swiss-Prot
Match: Q95749 (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS3 PE=1 SV=3)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-44
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWW-AFGNVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLPRRPRRLKRR K++P K++GRWW  FG  GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           RNEVRGR A KRVESIRLDD +KQNE+R WPKKK+RYGY DR PS KKNLS
Sbjct: 120 RNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. ExPASy Swiss-Prot
Match: P27928 (Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-44
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRP RLKRR KS+P KD+GRWWAFG VGPIGCLHSS+ TEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESI   D EKQNE+RIWPKK +RYGY DR+PSRKKN S
Sbjct: 120 NEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRYGYHDRTPSRKKNFS 166

[Close]

BLAST of CmaCh04G020330 vs. ExPASy TrEMBL
Match: D5I3A1 (Ribosomal protein S3 OS=Citrullus lanatus OX=3654 GN=rps3 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.9e-49
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KSKP K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGREAEKRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 120 NEVRGREAEKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. ExPASy TrEMBL
Match: E5DM03 (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.6e-49
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 116

[Close]

BLAST of CmaCh04G020330 vs. ExPASy TrEMBL
Match: D5I3F1 (Ribosomal protein S3 OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 9.6e-49
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. ExPASy TrEMBL
Match: A0A2H4YAQ6 (Ribosomal protein S3 OS=Schizocolea linderi OX=353847 GN=rps3 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 96/110 (87.27%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHS+D TEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSNDGTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGREA KRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS+KKNLS
Sbjct: 120 NEVRGREAGKRVESIRLDDQEKQNEIRIWPKKKQRYGYHDRSPSKKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. ExPASy TrEMBL
Match: A0A5J6NGQ5 (Ribosomal protein S3 OS=Tamarindus indica OX=58860 GN=rps3 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.8e-48
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 14  GCIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEE 73
           GCIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHSSD+TEEE
Sbjct: 59  GCIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDNTEEE 118

Query: 74  RNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           RNEVRGR A KRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 119 RNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: YP_003587231.1 (ribosomal protein S3 [Citrullus lanatus] >ACV96652.1 ribosomal protein S3 [Citrullus lanatus])

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-49
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KSKP K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGREAEKRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 120 NEVRGREAEKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: YP_003587365.1 (ribosomal protein S3 [Cucurbita pepo] >ACV96695.1 ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: ADL63821.1 (ribosomal protein S3, partial [Cucurbita pepo])

HSP 1 Score: 202.6 bits (514), Expect = 2.0e-48
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 116

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: AUD57065.1 (ribosomal protein S3 [Schizocolea linderi])

HSP 1 Score: 201.8 bits (512), Expect = 3.4e-48
Identity = 96/110 (87.27%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHS+D TEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSNDGTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGREA KRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS+KKNLS
Sbjct: 120 NEVRGREAGKRVESIRLDDQEKQNEIRIWPKKKQRYGYHDRSPSKKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: YP_009704660.1 (ribosomal protein S3 [Tamarindus indica] >QEX95863.1 ribosomal protein S3 [Tamarindus indica])

HSP 1 Score: 200.3 bits (508), Expect = 9.8e-48
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 14  GCIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEE 73
           GCIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHSSD+TEEE
Sbjct: 59  GCIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDNTEEE 118

Query: 74  RNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           RNEVRGR A KRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 119 RNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. TAIR 10
Match: ATMG00090.1 (structural constituent of ribosome;protein binding )

HSP 1 Score: 180.3 bits (456), Expect = 9.8e-46
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWW-AFGNVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLPRRPRRLKRR K++P K++GRWW  FG  GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           RNEVRGR A KRVESIRLDD +KQNE+R WPKKK+RYGY DR PS KKNLS
Sbjct: 120 RNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLS 170

The following BLAST results are available for this feature:

BLAST of CmaCh04G020330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04716	6.6e-47	84.55	Ribosomal protein S3, mitochondrial OS=Petunia hybrida OX=4102 GN=YRPS3 PE=2 SV=...	[more]
P27754	5.6e-46	81.82	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana OX=3950 GN=RPS3 PE=3...	[more]
P46773	6.2e-45	81.82	Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
Q95749	1.4e-44	80.18	Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS3 PE=1...	[more]
P27928	1.4e-44	80.91	Ribosomal protein S3, mitochondrial OS=Zea mays OX=4577 GN=RPS3 PE=3 SV=1	[more]

BLAST of CmaCh04G020330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D5I3A1	1.9e-49	90.00	Ribosomal protein S3 OS=Citrullus lanatus OX=3654 GN=rps3 PE=3 SV=1	[more]
E5DM03	9.6e-49	90.09	Ribosomal protein S3 (Fragment) OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1	[more]
D5I3F1	9.6e-49	90.09	Ribosomal protein S3 OS=Cucurbita pepo OX=3663 GN=rps3 PE=3 SV=1	[more]
A0A2H4YAQ6	1.6e-48	87.27	Ribosomal protein S3 OS=Schizocolea linderi OX=353847 GN=rps3 PE=3 SV=1	[more]
A0A5J6NGQ5	4.8e-48	86.49	Ribosomal protein S3 OS=Tamarindus indica OX=58860 GN=rps3 PE=3 SV=1	[more]

BLAST of CmaCh04G020330 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_003587231.1	4.0e-49	90.00	ribosomal protein S3 [Citrullus lanatus] >ACV96652.1 ribosomal protein S3 [Citru...	[more]
YP_003587365.1	2.0e-48	90.09	ribosomal protein S3 [Cucurbita pepo] >ACV96695.1 ribosomal protein S3 [Cucurbit...	[more]
ADL63821.1	2.0e-48	90.09	ribosomal protein S3, partial [Cucurbita pepo]	[more]
AUD57065.1	3.4e-48	87.27	ribosomal protein S3 [Schizocolea linderi]	[more]
YP_009704660.1	9.8e-48	86.49	ribosomal protein S3 [Tamarindus indica] >QEX95863.1 ribosomal protein S3 [Tamar...	[more]

BLAST of CmaCh04G020330 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00090.1	9.8e-46	80.18	structural constituent of ribosome;protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..83
IPR044954	Ribosomal protein S3, mitochondrial, plant	PANTHER	PTHR35928	RIBOSOMAL PROTEIN S3, MITOCHONDRIAL	coord: 57..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020330.1	CmaCh04G020330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome