CmaCh04G020320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal protein L2
Location	Cma_Chr04: 13062519 .. 13063165 (+)
RNA-Seq Expression	CmaCh04G020320
Synteny	CmaCh04G020320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGCAAAACGATAGAGGAGTTTGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCTGCGGCCTATTTTCATTCTCTTCCCCGCCTGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCAGGACGGATGGCAGCTTAGTGGTCGGACTTCCTACCAGGATGCCTCCTTGCTCGAAAAGCCCCTTTACTATTACTAGTAAAGGCACAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCATTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTAGATGGGACAAAGCCCGCTTTCTTCGCTCTGCGAATAAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTTGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGAAAAAGACTAACGGGCTTGTTGGAGGTGCTGAGCATAAGGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCAATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATTGTGCACCTGTCGTGTGA

mRNA sequence

ATGAAATGCAAAACGATAGAGGAGTTTGCTCCGCCGCATCCTCGAACCTACCACGACCACCATCTGCGGCCTATTTTCATTCTCTTCCCCGCCTGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCAGGACGGATGGCAGCTTAGTGGTCGGACTTCCTACCAGGATGCCTCCTTGCTCGAAAAGCCCCTTTACTATTACTAGTAAAGGCACAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCATTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTAGATGGGACAAAGCCCGCTTTCTTCGCTCTGCGAATAAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTTGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGAAAAAGACTAACGGGCTTGTTGGAGGTGCTGAGCATAAGGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCAATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATTGTGCACCTGTCGTGTGA

Coding sequence (CDS)

ATGAAATGCAAAACGATAGAGGAGTTTGCTCCGCCGCATCCTCGAACCTACCACGACCACCATCTGCGGCCTATTTTCATTCTCTTCCCCGCCTGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCAGGACGGATGGCAGCTTAGTGGTCGGACTTCCTACCAGGATGCCTCCTTGCTCGAAAAGCCCCTTTACTATTACTAGTAAAGGCACAGGAAGCAAAAAAACTTGCGCTAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCATTCCTTCGGTAGCTCTTTAGGTTTCCCAAGGATAGTGGTAGATGGGACAAAGCCCGCTTTCTTCGCTCTGCGAATAAGAGAGAAAGTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCAAAAGTGGAGAACACATAGCATTCTCTTGGCACATAGGATGAAACGTAAAGCTGCGCTTGATTGGCGGAGTTTTAGGCGGAAAAAGACTAACGGGCTTGTTGGAGGTGCTGAGCATAAGGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCAATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATTGTGCACCTGTCGTGTGA

Protein sequence

MKCKTIEEFAPPHPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPVV

Homology

[Close]

BLAST of CmaCh04G020320 vs. ExPASy Swiss-Prot
Match: P93311 (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.6e-56
Identity = 131/226 (57.96%), Postives = 144/226 (63.72%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           K  TIE+FAPP     P T     L   F   P      K            +VVGLPT 
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGLFS-FSFLPGKVDKRKVACFSPGLMAAYVVVGLPTG 141

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S S     SKG GS KT  KDVFFSAFSS K K ETAS +F SS GFPRI V G K
Sbjct: 142 MPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAK 201

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+R+KVRGK+TFSLCEVQK RTHSIL AHR+K KA L W+SFRR+ T GLVG A
Sbjct: 202 PAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAA 261

Query: 182 EHKESKPETDQGSLPAKPIGE-----------GPKDGACKVNCAPV 213
            HK+SKP+TDQG+LPAKPIGE             KDGACKV+ APV
Sbjct: 262 GHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh04G020320 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.2e-37
Identity = 92/168 (54.76%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 85  FSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWR 144
           FS+ SS   +GETAS SFGSSLGFPRI V G KPAFFA R+REK  GK TFSLCE++KWR
Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWR 172

Query: 145 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQ---------------- 204
           TH +L AHR+KRKAAL W+S R++KT  LVG AEH ESK + DQ                
Sbjct: 173 THCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSG 232

Query: 205 -----------------------GSLPAK-PIGEGPKDGACKVNCAPV 213
                                  GSLPAK PIGEGPKDGA KV+ APV
Sbjct: 233 RPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPV 280

[Close]

BLAST of CmaCh04G020320 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.2e-37
Identity = 92/168 (54.76%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 85  FSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWR 144
           FS+ SS   +GETAS SFGSSLGFPRI V G KPAFFA R+REK  GK TFSLCE++KWR
Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWR 172

Query: 145 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQ---------------- 204
           TH +L AHR+KRKAAL W+S R++KT  LVG AEH ESK + DQ                
Sbjct: 173 THCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSG 232

Query: 205 -----------------------GSLPAK-PIGEGPKDGACKVNCAPV 213
                                  GSLPAK PIGEGPKDGA KV+ APV
Sbjct: 233 RPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPV 280

[Close]

BLAST of CmaCh04G020320 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 155.6 bits (392), Expect = 6.2e-37
Identity = 92/168 (54.76%), Postives = 104/168 (61.90%), Query Frame = 0


Query: 85  FSAFSSQKTKGETASHSFGSSLGFPRIVVDGTKPAFFALRIREKVRGKNTFSLCEVQKWR 144
           FS+ SS   +GETAS SFGSSLGFPRI V G KPAFFA R+REK  GK TFSLCE++KWR
Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRKWR 172

Query: 145 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAEHKESKPETDQ---------------- 204
           TH +L AHR+KRKAAL W+S R++KT  LVG AEH ESK + DQ                
Sbjct: 173 THCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSG 232

Query: 205 -----------------------GSLPAK-PIGEGPKDGACKVNCAPV 213
                                  GSLPAK PIGEGPKDGA KV+ APV
Sbjct: 233 RPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPV 280

[Close]

BLAST of CmaCh04G020320 vs. ExPASy Swiss-Prot
Match: P26859 (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 38/104 (36.54%), Postives = 50/104 (48.08%), Query Frame = 0


Query: 96  ETASHSFGSSLGFPRIVVDGTKPAFFALRIR-----------EKVRGKNTFSLCEVQKWR 155
           E +    GS LG P I V G KPAFFA R++             +RG+NTFS  E Q+W+
Sbjct: 150 EVSLGPLGSFLGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWK 209

Query: 156 THSILLAHRMKRKAALDWRSFRRKKTNGLVGGAE---HKESKPE 186
           T S       ++   L W S   K  NGL+  A     K+ +PE
Sbjct: 210 TQS---GAPRRKSLVLSW-SQGPKARNGLMISAHDIGKKDRRPE 249

[Close]

BLAST of CmaCh04G020320 vs. ExPASy TrEMBL
Match: A0A7D5XZ32 (Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 3.2e-76
Identity = 160/217 (73.73%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP 61
           KCKTIEEFAPP     P T     +R +F     P      K            +VVGLP
Sbjct: 83  KCKTIEEFAPPRKILEPTT---TTIRGLFSFSSPPGKVDQRKVACFSPGLMAAYVVVGLP 142

Query: 62  TRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDG 121
           TRMPP SKSPFT TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSS GFPRI V G
Sbjct: 143 TRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRIAVAG 202

Query: 122 TKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVG 181
            KPAFFA R+REK+RGKNTFSLCEV+KWRTHSIL AHRMKRKAAL WRSFRR++T GLVG
Sbjct: 203 AKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRMKRKAALSWRSFRRQETLGLVG 262

Query: 182 GAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           GAEH ESKPETDQGSLPAKPIGEGPKDGACKVN APV
Sbjct: 263 GAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 296

[Close]

BLAST of CmaCh04G020320 vs. ExPASy TrEMBL
Match: D5I3E9 (Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.3e-76
Identity = 159/215 (73.95%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KCKTIEEFAPP     P T     L   F   P      K       +    +VVGLPTR
Sbjct: 83  KCKTIEEFAPPRKILEPTTTTIRGLFS-FSSTPGKVDQRKVACFSPGQMAAYVVVGLPTR 142

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           +PPCSKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSSLGFPRI V G K
Sbjct: 143 IPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAK 202

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGKNTFSLCEV+KWRTHSIL AHRMKRKAALDW+SFRR++T+GLVGGA
Sbjct: 203 PAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGA 262

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EH ESKPETD  SLPAKPIGEGPKDGACKVN APV
Sbjct: 263 EHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. ExPASy TrEMBL
Match: D5I399 (Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.0e-74
Identity = 157/217 (72.35%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP 61
           KCKTIEEFAPP     P T     +R +F     P      K       R    +VVGLP
Sbjct: 83  KCKTIEEFAPPRKILEPTT---TTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLP 142

Query: 62  TRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDG 121
           TRMPP SKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSS GFPR+ V G
Sbjct: 143 TRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRVAVAG 202

Query: 122 TKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVG 181
            KPAFFA R+R+K+RGKNTFSLCEV+KWRTHSIL AHR+KRKAAL WRSFRR++T GLVG
Sbjct: 203 AKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVG 262

Query: 182 GAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           GAEH ESKPETDQGSLPAKPIGEGPKDGACKVN APV
Sbjct: 263 GAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. ExPASy TrEMBL
Match: A0A3S9JIH9 (Ribosomal protein L2 OS=Cucumis melo var. momordica OX=2034244 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.9e-70
Identity = 152/216 (70.37%), Postives = 161/216 (74.54%), Query Frame = 0


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP-TR 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLP TR
Sbjct: 89  KCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPVV 214
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PVV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPVV 304

[Close]

BLAST of CmaCh04G020320 vs. ExPASy TrEMBL
Match: G3EU27 (Ribosomal protein L2 OS=Cucumis melo subsp. melo OX=412675 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.9e-69
Identity = 151/215 (70.23%), Postives = 160/215 (74.42%), Query Frame = 0


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP-TR 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLP TR
Sbjct: 89  KCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPV 303

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: YP_009913619.1 (ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa acutangula])

HSP 1 Score: 294.7 bits (753), Expect = 6.6e-76
Identity = 160/217 (73.73%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP 61
           KCKTIEEFAPP     P T     +R +F     P      K            +VVGLP
Sbjct: 83  KCKTIEEFAPPRKILEPTT---TTIRGLFSFSSPPGKVDQRKVACFSPGLMAAYVVVGLP 142

Query: 62  TRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDG 121
           TRMPP SKSPFT TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSS GFPRI V G
Sbjct: 143 TRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRIAVAG 202

Query: 122 TKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVG 181
            KPAFFA R+REK+RGKNTFSLCEV+KWRTHSIL AHRMKRKAAL WRSFRR++T GLVG
Sbjct: 203 AKPAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRMKRKAALSWRSFRRQETLGLVG 262

Query: 182 GAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           GAEH ESKPETDQGSLPAKPIGEGPKDGACKVN APV
Sbjct: 263 GAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 296

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: YP_003587363.1 (ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 [Cucurbita pepo])

HSP 1 Score: 293.1 bits (749), Expect = 1.9e-75
Identity = 159/215 (73.95%), Postives = 168/215 (78.14%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KCKTIEEFAPP     P T     L   F   P      K       +    +VVGLPTR
Sbjct: 83  KCKTIEEFAPPRKILEPTTTTIRGLFS-FSSTPGKVDQRKVACFSPGQMAAYVVVGLPTR 142

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           +PPCSKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSSLGFPRI V G K
Sbjct: 143 IPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSLGFPRIAVAGAK 202

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGKNTFSLCEV+KWRTHSIL AHRMKRKAALDW+SFRR++T+GLVGGA
Sbjct: 203 PAFFAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGA 262

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           EH ESKPETD  SLPAKPIGEGPKDGACKVN APV
Sbjct: 263 EHNESKPETDPASLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: YP_003587229.1 (ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 288.1 bits (736), Expect = 6.1e-74
Identity = 157/217 (72.35%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP 61
           KCKTIEEFAPP     P T     +R +F     P      K       R    +VVGLP
Sbjct: 83  KCKTIEEFAPPRKILEPTT---TTIRGLFSFSSPPGKVDQRKVACFSPGRMAAYVVVGLP 142

Query: 62  TRMPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDG 121
           TRMPP SKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGSS GFPR+ V G
Sbjct: 143 TRMPPWSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRVAVAG 202

Query: 122 TKPAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVG 181
            KPAFFA R+R+K+RGKNTFSLCEV+KWRTHSIL AHR+KRKAAL WRSFRR++T GLVG
Sbjct: 203 AKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVG 262

Query: 182 GAEHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPV 213
           GAEH ESKPETDQGSLPAKPIGEGPKDGACKVN APV
Sbjct: 263 GAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPV 294

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: XP_023521202.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.4 bits (729), Expect = 4.0e-73
Identity = 155/211 (73.46%), Postives = 163/211 (77.25%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           KCKTIEEFAPP     P T   H L   F   P      K       +    +VVGLPTR
Sbjct: 89  KCKTIEEFAPPRKILEPTTTTIHGLFS-FSSTPGKVDQRKVACFSPGQIAAYVVVGLPTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           +PPCSKSPF  TSKG GSKKTCAKDVFFSAFSSQKTKGETAS SFGS LGFPRIVV G  
Sbjct: 149 IPPCSKSPF--TSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSPLGFPRIVVAGAM 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRG NTFSLCEV KWRTHSIL AHRMKRKAALDW+SFRR++T+GLVGGA
Sbjct: 209 PAFFAPRMREKVRGINTFSLCEVXKWRTHSILWAHRMKRKAALDWQSFRRQETDGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVN 209
           EH ESKPETD  SLPAKPIGEGPKDGACKVN
Sbjct: 269 EHNESKPETDPASLPAKPIGEGPKDGACKVN 296

[Close]

BLAST of CmaCh04G020320 vs. NCBI nr
Match: AZP40312.1 (ribosomal protein L2 [Cucumis melo var. momordica])

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-69
Identity = 152/216 (70.37%), Postives = 161/216 (74.54%), Query Frame = 0


Query: 2   KCKTIEEFAP-PHPRTYHDHHLRPIFILF--PAWEGGSKKGSLLLSRTDGSLVVGLP-TR 61
           KCKT EEFAP P         +R +F     P      K  S    R    +VVGLP TR
Sbjct: 89  KCKTQEEFAPQPQILEPTTTTIRGLFSFSSPPGKVDQRKVASFSPGRMAAYVVVGLPTTR 148

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP SKSP T T KG GSKKTCAKD+FFSAFSSQKTKGETAS SFGSS  FPR+ V G K
Sbjct: 149 MPPWSKSPDTSTRKGAGSKKTCAKDLFFSAFSSQKTKGETASLSFGSSFAFPRVAVAGAK 208

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+REKVRGK TFSLCEV+KWRTHSIL AHRMK KAAL WRSFRR++T GLVGGA
Sbjct: 209 PAFFAPRMREKVRGKKTFSLCEVRKWRTHSILWAHRMKGKAALSWRSFRRQETLGLVGGA 268

Query: 182 EHKESKPETDQGSLPAKPIGEGPKDGACKVNCAPVV 214
           EHKESK E DQGSLPAKPIGEGPKDGACKVN  PVV
Sbjct: 269 EHKESKAERDQGSLPAKPIGEGPKDGACKVNRVPVV 304

[Close]

BLAST of CmaCh04G020320 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 219.2 bits (557), Expect = 3.3e-57
Identity = 131/226 (57.96%), Postives = 144/226 (63.72%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           K  TIE+FAPP     P T     L   F   P      K            +VVGLPT 
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGLFS-FSFLPGKVDKRKVACFSPGLMAAYVVVGLPTG 141

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S S     SKG GS KT  KDVFFSAFSS K K ETAS +F SS GFPRI V G K
Sbjct: 142 MPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAK 201

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+R+KVRGK+TFSLCEVQK RTHSIL AHR+K KA L W+SFRR+ T GLVG A
Sbjct: 202 PAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAA 261

Query: 182 EHKESKPETDQGSLPAKPIGE-----------GPKDGACKVNCAPV 213
            HK+SKP+TDQG+LPAKPIGE             KDGACKV+ APV
Sbjct: 262 GHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPV 306

[Close]

BLAST of CmaCh04G020320 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 214.5 bits (545), Expect = 8.0e-56
Identity = 128/222 (57.66%), Postives = 141/222 (63.51%), Query Frame = 0


Query: 2   KCKTIEEFAPP----HPRTYHDHHLRPIFILFPAWEGGSKKGSLLLSRTDGSLVVGLPTR 61
           K  TIE+FAPP     P T     L   F   P      K            +VVGLPT 
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGLFS-FSFLPGKVDKRKVACFSPGLMAAYVVVGLPTG 141

Query: 62  MPPCSKSPFTITSKGTGSKKTCAKDVFFSAFSSQKTKGETASHSFGSSLGFPRIVVDGTK 121
           MPP S S     SKG GS KT  KDVFFSAFSS K K ETAS +F SS GFPRI V G K
Sbjct: 142 MPPLSSSKSAFASKGAGSTKTLVKDVFFSAFSSLKAKRETASLAFASSFGFPRIAVAGAK 201

Query: 122 PAFFALRIREKVRGKNTFSLCEVQKWRTHSILLAHRMKRKAALDWRSFRRKKTNGLVGGA 181
           PAFFA R+R+KVRGK+TFSLCEVQK RTHSIL AHR+K KA L W+SFRR+ T GLVG A
Sbjct: 202 PAFFAPRMRQKVRGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAA 261

Query: 182 EHKESKPETDQGSLPAKPIGE-----------GPKDGACKVN 209
            HK+SKP+TDQG+LPAKPIGE             KDGACKV+
Sbjct: 262 GHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVD 302

The following BLAST results are available for this feature:

BLAST of CmaCh04G020320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93311	4.6e-56	57.96	60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 ...	[more]
P0C8K6	6.2e-37	54.76	60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=...	[more]
Q2F969	6.2e-37	54.76	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G...	[more]
P92812	6.2e-37	54.76	60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947...	[more]
P26859	2.2e-05	36.54	60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2...	[more]

BLAST of CmaCh04G020320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D5XZ32	3.2e-76	73.73	Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1	[more]
D5I3E9	9.3e-76	73.95	Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1	[more]
D5I399	3.0e-74	72.35	Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1	[more]
A0A3S9JIH9	9.9e-70	70.37	Ribosomal protein L2 OS=Cucumis melo var. momordica OX=2034244 GN=rpl2 PE=3 SV=1	[more]
G3EU27	2.9e-69	70.23	Ribosomal protein L2 OS=Cucumis melo subsp. melo OX=412675 GN=rpl2 PE=3 SV=1	[more]

BLAST of CmaCh04G020320 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009913619.1	6.6e-76	73.73	ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa ...	[more]
YP_003587363.1	1.9e-75	73.95	ribosomal protein L2 [Cucurbita pepo] >ACV96687.1 ribosomal protein L2 [Cucurbit...	[more]
YP_003587229.1	6.1e-74	72.35	ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citru...	[more]
XP_023521202.1	4.0e-73	73.46	LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp....	[more]
AZP40312.1	2.0e-69	70.37	ribosomal protein L2 [Cucumis melo var. momordica]	[more]

BLAST of CmaCh04G020320 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00560.1	3.3e-57	57.96	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G07715.1	8.0e-56	57.66	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..187
None	No IPR available	PANTHER	PTHR13691:SF44	60S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL-RELATED	coord: 2..198
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 2..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020320.1	CmaCh04G020320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome