Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTTTCCGAGGAGCCGAGTGACGTGCCAGCGCAACTAATTGAGTGCCAGCACGTAACAGTGCTGTCAGTAATCTTGGAGCCTGATCCTTTCAAACGAAGAACTTTCGAGTGTGTGCTTTTGATTGCTACTAGCGCGCTTTACTAAAAAGACTCGGCATTCAGGCGAGCCACCCGGTGGTGTGGTACGAAGTGAGTTTAGTACGCCCGGCCAAAACAGCTCTGAAACAAACAAAAAAAAGGTGTGTGCCGCACTCACGAGGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCAGAGCGAATCCGGAAAGATTGTCTCAGTTCAGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATTGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATGGGTTTCACCCGAAGCATCGGACCAATTCTCACCCATGACTTCCGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCACGGTGGGGTCTTCGACTGGGATGAAGTTGTAA
mRNA sequence
ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTTTCCGAGGAGCCGAGTGACGTGCCAGCGCAACTAATTGAGTGCCAGCACCGCGCTTTACTAAAAAGACTCGGCATTCAGGCGAGCCACCCGGTGGTGTGGTACGAAGTGAGTTTAGTACGCCCGGCCAAAACAGCTCTGAAACAAACAAAAAAAAGGTGTGTGCCGCACTCACGAGGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCAGAGCGAATCCGGAAAGATTGTCTCAGTTCAGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATTGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATGGGTTTCACCCGAAGCATCGGACCAATTCTCACCCATGACTTCCGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCACGGTGGGGTCTTCGACTGGGATGAAGTTGTAA
Coding sequence (CDS)
ATGCGCCTAAGGATCAAGTCTTTGCAACCGAAGTTTTCCGAGGAGCCGAGTGACGTGCCAGCGCAACTAATTGAGTGCCAGCACCGCGCTTTACTAAAAAGACTCGGCATTCAGGCGAGCCACCCGGTGGTGTGGTACGAAGTGAGTTTAGTACGCCCGGCCAAAACAGCTCTGAAACAAACAAAAAAAAGGTGTGTGCCGCACTCACGAGGGACTGCTAGTGATATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCAGAGCGAATCCGGAAAGATTGTCTCAGTTCAGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATTGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATGGGTTTCACCCGAAGCATCGGACCAATTCTCACCCATGACTTCCGTGTCACACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGCCGCATACCACGGTGGGGTCTTCGACTGGGATGAAGTTGTAA
Protein sequence
MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMKL
Homology
BLAST of CmaCh04G020160 vs. ExPASy TrEMBL
Match:
A0A5A7V4U9 (Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00030 PE=3 SV=1)
HSP 1 Score: 353.2 bits (905), Expect = 7.1e-94
Identity = 173/199 (86.93%), Postives = 182/199 (91.46%), Query Frame = 0
Query: 1 MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQ 60
MRLRIKSLQPKF+EEPS+VPA+LIECQH A+L ASHPVVWYEV LVRPAKT
Sbjct: 1 MRLRIKSLQPKFAEEPSEVPARLIECQHVAVL-----SASHPVVWYEVGLVRPAKTG-PH 60
Query: 61 TKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
+RCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS
Sbjct: 61 YSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
Query: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQ 180
DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGF RSIGP++THDFRV LVPQ
Sbjct: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQ 180
Query: 181 RLLVVLLPHTTVGSSTGMK 200
RLLVVLL HTTVGSSTG+K
Sbjct: 181 RLLVVLLAHTTVGSSTGVK 193
BLAST of CmaCh04G020160 vs. ExPASy TrEMBL
Match:
A0A2J6L3N0 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=1)
HSP 1 Score: 309.3 bits (791), Expect = 1.2e-80
Identity = 151/169 (89.35%), Postives = 157/169 (92.90%), Query Frame = 0
Query: 31 LLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPL 90
+ +RLGIQAS PVVWY V LVRPAKTA KQT KRCVPHSR TASDILEEGGDDVKSAWPL
Sbjct: 41 IAERLGIQASRPVVWYVVGLVRPAKTAPKQT-KRCVPHSRRTASDILEEGGDDVKSAWPL 100
Query: 91 WAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV 150
WAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV
Sbjct: 101 WAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV 160
Query: 151 HTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMK 200
HTARHTLG+GF RSIGP++THDF V LVPQRLLVVLL HTTVGSSTG+K
Sbjct: 161 HTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVGSSTGVK 208
BLAST of CmaCh04G020160 vs. ExPASy TrEMBL
Match:
A0A2J6JHW2 (Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=1)
HSP 1 Score: 300.1 bits (767), Expect = 7.1e-78
Identity = 147/169 (86.98%), Postives = 154/169 (91.12%), Query Frame = 0
Query: 31 LLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPL 90
+ +RLGIQAS PVVWY V LVRPAKTA KQT KRCVPHSR TASDILEEGGDDVKSAWPL
Sbjct: 45 IAERLGIQASRPVVWYVVGLVRPAKTAPKQT-KRCVPHSRRTASDILEEGGDDVKSAWPL 104
Query: 91 WAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV 150
WAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGP+
Sbjct: 105 WAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPL 164
Query: 151 HTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMK 200
HT RHTLG+GF RSIGP++THDF V LVPQRLLVVLL HTTV SST +K
Sbjct: 165 HTVRHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVVSSTRVK 212
BLAST of CmaCh04G020160 vs. ExPASy TrEMBL
Match:
A0A6V7PYW1 (Uncharacterized protein ycf68 OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS19151 PE=3 SV=1)
HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 155/198 (78.28%), Postives = 164/198 (82.83%), Query Frame = 0
Query: 13 SEEPSDVPAQ---LIECQHRALLK-------RLGIQASHPVVWYEVSLVR-PAKTALKQT 72
SE S V Q LIECQH L + RLGIQAS PVVWY V +VR PA +
Sbjct: 10 SEPRSRVTCQRYYLIECQHAWLRRRRVGGGGRLGIQASRPVVWYVVVIVRGPA----PKQ 69
Query: 73 KKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD 132
+KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD
Sbjct: 70 RKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD 129
Query: 133 CSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQR 192
CSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLG+GF RSIGP++THDF V VPQR
Sbjct: 130 CSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPNVPQR 189
Query: 193 LLVVLLPHTTVGSSTGMK 200
LVVLL HTTVGSSTG+K
Sbjct: 190 PLVVLLAHTTVGSSTGVK 203
BLAST of CmaCh04G020160 vs. ExPASy TrEMBL
Match:
S8D505 (Uncharacterized protein ycf68 OS=Genlisea aurea OX=192259 GN=M569_00256 PE=3 SV=1)
HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 148/199 (74.37%), Postives = 158/199 (79.40%), Query Frame = 0
Query: 1 MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQ 60
MRLR KS QPK +EEPSDVPA LIECQH A+ + P K +
Sbjct: 1 MRLRRKSFQPKRAEEPSDVPALLIECQHYAVSNKYA----------------PPKLRAPE 60
Query: 61 TKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
+KR VPHSR TASDILEEGGD+VKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSS
Sbjct: 61 ERKRRVPHSRRTASDILEEGGDNVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSS 120
Query: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQ 180
DCSLQLGNMKL+SLVIA QHAAVNMYPGPVHTARHTLG+GF RSIGP + HDF TLVPQ
Sbjct: 121 DCSLQLGNMKLKSLVIAHQHAAVNMYPGPVHTARHTLGIGFARSIGPTIAHDFCGTLVPQ 180
Query: 181 RLLVVLLPHTTVGSSTGMK 200
RLLVVLL HTTVGSSTG+K
Sbjct: 181 RLLVVLLAHTTVGSSTGVK 183
BLAST of CmaCh04G020160 vs. NCBI nr
Match:
KAA0060781.1 (hypothetical protein E6C27_scaffold44334G00030 [Cucumis melo var. makuwa])
HSP 1 Score: 353.2 bits (905), Expect = 1.5e-93
Identity = 173/199 (86.93%), Postives = 182/199 (91.46%), Query Frame = 0
Query: 1 MRLRIKSLQPKFSEEPSDVPAQLIECQHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQ 60
MRLRIKSLQPKF+EEPS+VPA+LIECQH A+L ASHPVVWYEV LVRPAKT
Sbjct: 1 MRLRIKSLQPKFAEEPSEVPARLIECQHVAVL-----SASHPVVWYEVGLVRPAKTG-PH 60
Query: 61 TKKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
+RCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS
Sbjct: 61 YSERCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSS 120
Query: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQ 180
DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGF RSIGP++THDFRV LVPQ
Sbjct: 121 DCSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFARSIGPMITHDFRVPLVPQ 180
Query: 181 RLLVVLLPHTTVGSSTGMK 200
RLLVVLL HTTVGSSTG+K
Sbjct: 181 RLLVVLLAHTTVGSSTGVK 193
BLAST of CmaCh04G020160 vs. NCBI nr
Match:
PLY81935.1 (hypothetical protein LSAT_5X16200 [Lactuca sativa])
HSP 1 Score: 309.3 bits (791), Expect = 2.4e-80
Identity = 151/169 (89.35%), Postives = 157/169 (92.90%), Query Frame = 0
Query: 31 LLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPL 90
+ +RLGIQAS PVVWY V LVRPAKTA KQT KRCVPHSR TASDILEEGGDDVKSAWPL
Sbjct: 41 IAERLGIQASRPVVWYVVGLVRPAKTAPKQT-KRCVPHSRRTASDILEEGGDDVKSAWPL 100
Query: 91 WAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV 150
WAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV
Sbjct: 101 WAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV 160
Query: 151 HTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMK 200
HTARHTLG+GF RSIGP++THDF V LVPQRLLVVLL HTTVGSSTG+K
Sbjct: 161 HTARHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVGSSTGVK 208
BLAST of CmaCh04G020160 vs. NCBI nr
Match:
PLY62414.1 (hypothetical protein LSAT_5X16680 [Lactuca sativa])
HSP 1 Score: 300.1 bits (767), Expect = 1.5e-77
Identity = 147/169 (86.98%), Postives = 154/169 (91.12%), Query Frame = 0
Query: 31 LLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKSAWPL 90
+ +RLGIQAS PVVWY V LVRPAKTA KQT KRCVPHSR TASDILEEGGDDVKSAWPL
Sbjct: 45 IAERLGIQASRPVVWYVVGLVRPAKTAPKQT-KRCVPHSRRTASDILEEGGDDVKSAWPL 104
Query: 91 WAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPV 150
WAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGP+
Sbjct: 105 WAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMYPGPL 164
Query: 151 HTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMK 200
HT RHTLG+GF RSIGP++THDF V LVPQRLLVVLL HTTV SST +K
Sbjct: 165 HTVRHTLGIGFARSIGPMITHDFCVPLVPQRLLVVLLAHTTVVSSTRVK 212
BLAST of CmaCh04G020160 vs. NCBI nr
Match:
CAD1835940.1 (unnamed protein product [Ananas comosus var. bracteatus])
HSP 1 Score: 298.9 bits (764), Expect = 3.3e-77
Identity = 155/198 (78.28%), Postives = 164/198 (82.83%), Query Frame = 0
Query: 13 SEEPSDVPAQ---LIECQHRALLK-------RLGIQASHPVVWYEVSLVR-PAKTALKQT 72
SE S V Q LIECQH L + RLGIQAS PVVWY V +VR PA +
Sbjct: 10 SEPRSRVTCQRYYLIECQHAWLRRRRVGGGGRLGIQASRPVVWYVVVIVRGPA----PKQ 69
Query: 73 KKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD 132
+KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD
Sbjct: 70 RKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSD 129
Query: 133 CSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQR 192
CSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLG+GF RSIGP++THDF V VPQR
Sbjct: 130 CSLQLGNMKLESLVIADQHAAVNMYPGPVHTARHTLGIGFARSIGPMITHDFCVPNVPQR 189
Query: 193 LLVVLLPHTTVGSSTGMK 200
LVVLL HTTVGSSTG+K
Sbjct: 190 PLVVLLAHTTVGSSTGVK 203
BLAST of CmaCh04G020160 vs. NCBI nr
Match:
KAG8363149.1 (hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia])
HSP 1 Score: 295.0 bits (754), Expect = 4.7e-76
Identity = 145/173 (83.82%), Postives = 153/173 (88.44%), Query Frame = 0
Query: 27 QHRALLKRLGIQASHPVVWYEVSLVRPAKTALKQTKKRCVPHSRGTASDILEEGGDDVKS 86
+H K +A PVVWY V LVRPAKTA K+ +KRCVPHSR TASDILEEGGDDVKS
Sbjct: 440 RHAPKEKVFATEAICPVVWYVVGLVRPAKTAPKE-RKRCVPHSRRTASDILEEGGDDVKS 499
Query: 87 AWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMY 146
AWPLWAGPHTCYNGN NGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMY
Sbjct: 500 AWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAVNMY 559
Query: 147 PGPVHTARHTLGMGFTRSIGPILTHDFRVTLVPQRLLVVLLPHTTVGSSTGMK 200
PGPVHTARHTLG+GF RSIGP++THDF VTLVPQRLLV LL HTTVGSSTG+K
Sbjct: 560 PGPVHTARHTLGIGFARSIGPMITHDFCVTLVPQRLLVGLLAHTTVGSSTGVK 611
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V4U9 | 7.1e-94 | 86.93 | Uncharacterized protein ycf68 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A2J6L3N0 | 1.2e-80 | 89.35 | Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=3 SV=... | [more] |
A0A2J6JHW2 | 7.1e-78 | 86.98 | Uncharacterized protein ycf68 OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=3 SV=... | [more] |
A0A6V7PYW1 | 1.6e-77 | 78.28 | Uncharacterized protein ycf68 OS=Ananas comosus var. bracteatus OX=296719 GN=CB5... | [more] |
S8D505 | 1.5e-75 | 74.37 | Uncharacterized protein ycf68 OS=Genlisea aurea OX=192259 GN=M569_00256 PE=3 SV=... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060781.1 | 1.5e-93 | 86.93 | hypothetical protein E6C27_scaffold44334G00030 [Cucumis melo var. makuwa] | [more] |
PLY81935.1 | 2.4e-80 | 89.35 | hypothetical protein LSAT_5X16200 [Lactuca sativa] | [more] |
PLY62414.1 | 1.5e-77 | 86.98 | hypothetical protein LSAT_5X16680 [Lactuca sativa] | [more] |
CAD1835940.1 | 3.3e-77 | 78.28 | unnamed protein product [Ananas comosus var. bracteatus] | [more] |
KAG8363149.1 | 4.7e-76 | 83.82 | hypothetical protein BUALT_BualtMtG0001200 [Buddleja alternifolia] | [more] |
Match Name | E-value | Identity | Description | |