CmaCh04G020030 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G020030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Location	Cma_Chr04: 12314984 .. 12320028 (-)
RNA-Seq Expression	CmaCh04G020030
Synteny	CmaCh04G020030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAATTTTTCGAGGGGGAAATGAGAGATATTTTGTTCCACCACAAAGAATTATTTCATTTTTGCATTTCAACGAATTTACATGATACATCAGAACAAGCATTTCTAGGATTTAATGATTTATAAAGGTGGAGTCATCCTGTTAACTATCCGCGTTGATTTGGTAATAAGATAATAACGAATAGAAAAAAATTAATGGCTTGGATCGTGTATCAACAGTCACTCCCCGGTAGAGGTAGAGGATAAGGTTCCATGGGAACAATTATTTATTTCTATTTCAGNNNNNNNNNNTAGCCAAAAATGGACCACACCTAAAATCGGGTCAAATTATAATTGTTCAAGTTGATTCTGTAGTAATAAGATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGACATTATGGAGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGCGATATAACGCAGGGTCTTCCAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCAATGAACCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACTATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAATTTTTCGAGGGGGAAATGAGAGATATTTTGTTCCACCACAAAGAATTATTTCATTTTTGCATTTCAACGAATTTACATGATACATCAGAACAAGCATTTCTAGGATTTAATGATTTATAAAGGTGGAGTCATCCTGTTAACTATCCGCGTTGATTTGGTAATAAGATAATAACGAATAGAAAAAAATTAATGGCTTGGATCGTGTATCAACAGTCACTCCCCGGTAGAGGTAGAGGATAAGGTTCCATGGGAACAATTATTTATTTCTATTTCAGTTAAAGGAGAAGTTGTGAAGCACAAAAAGGAGAATTTGTGTAGCCGTCTGGTGGCGAAGGGCTATGTCCAGAAGCAAGGAGTGGACTTCGAAGAAGTATTTGTGCCAAGGAGAAGTTGTGAAGTACAAGGCCCGTTTGGTGGCGAAGGGCTATGTCCAGAAGCAAGGAGTGGACTTCGAAAAAGTATTTGCGCCAAGGAGAAGTTGTGAAGCACAAGGCCCGTCTGGTGATGAAGGGCTACGTCCAGAAGCAAGAAGTGGACTTCGAAGAAGTATTTGCGCCAAGGAGAAGTTGTGAAGCACAAGGCCCGTCCGGTGGCGAAAGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAAGTATTTGAGTCGATGGCAATGTTAGAATCCGTCCGTCTTTTGTTGGCAATTGCGGCACATTGCTTTTGGGATGTCACTATATGAACGTAAAGTCTGCTTTACTTAACGGAGAGCTGAAGGAGACCGTCTACGTCTGACAACCACCTCGCTTCCTAGACAACGACAACCCTGGTAAGGTACTGCGCCTTGCCTTCGACAAGCCCCACGAGCCTGGAATGCAAAGCTCGATAGTACCCTACTGTCACTAAAGTTCAAGCGTTGTGCCACTGAGCATGGCATGTACACGCACGACCATGGCAAGCAGCGACTGATCGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGCGACATGGAAGTCCTAGGAAGGTTCAAGAAGAAGATGTCAAAGAACTTCGAGATGAGCGATCTCGGCGTGCTCAGCTACTACCTCGGCATCGAAGTGCAACAGAATTCTACCAGTATCTTCATTTGCCAAAGTGCGTACGCGAAGAAGCTGCTAGACACAACTGGGCTAAGCTGCTGGACACAACTGGGCTTGCGGACAGTAATCCTACAAGGACACCAATGGAGGTCTGGCTCCAACTAAGGAAGGTCGTCACTACGACGATAGTCGACTTCACCAATTACCGCAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACACTCGTTCTGATCTTGCTTATTCTATTAGATATGTGAGTAGGTTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCGCTATGTATCCGGAACCAGAGGCTGGGGTGTAAGATACTGCGTAGGGAGAGGAAAGGAGAAATAGTGATAGTGACATGGTCGATGACGTTGATGATCGTAAGAGCACTAGAGAAATGATCTACTTCCTCTCAGGAGGCGCGATCTGCTGGCAATCAACAAAACAGAAGATAGTTGTTTTGTTTTCTTGCGAATCAGAACACATCGCCGCTTCGATGGCAGCAACACAGGGGGTCTGGCTTGCGCGACTAATGCAAGAACTCATCGGGAGAGAAAGCGATCCACCAATGCTATACGTGGACAACAAAGCTACGATCTCCCTGATCAAAAATCTAGTTTTGCACGACTGGAGCAAGCACATAGAAATCAGATTCCACTACATTCGAGAATGTGCAGATCGAGGGCTCATCAAGATTGATTCCTTCCGAATAGAGGAACAACTTGGAGACATTTTCATCAAGTCCCAGGCGTGGGTAAAATTTGAAGAACTACGCTCAAAGATCGGAGTTCAAATAATAAGGTAGATATAGCACAACTTTTAGGAGGAGATTATTCAATAAAAGCTATGGTCCTCTTCAATTTAGTTAAGTTGTTTTGACCGTTCTGAATTCACGCTAATGTAAGGGGTAAATTTGGTCGGCCCATTTTTGGCTGACTTTGGAGGAAGTTTTAGCCCACTCTTCTATTTTTATAATTAGGTTTGTTATTTAAAGAATTACTGAAATAAAACATATAGTATTCAGCAAATCTCTCCCTCTCTCCTTCTACTTTCCCCTCATTTTTCTTCGAATAAATTTTCCTTCGTCAATTTGTTTTTCGTGGACGTTTTTGCCAGAAATCAACATTTTTAAGATAGTTACGCTTGCAAATTCAACATTGAGTGTTACAAAAACAAAAATATTGCTATTGAAATCACTTGAGACTTGTATTTTTAGAACTTTTTCTCAATTCTCTTTTGTATATCTTAGTCTCCTATTTCATCTCTTAGATCTTTCTCTCTCATCGATAAATCCGATCCTCTCACT

mRNA sequence

GGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGACATTATGGAGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGCGATATAACGCAGGGTCTTCCAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCAATGAACCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACTATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAATTTTTCGAGGGGGAAATGAGAGATATTTTATCTTTCTCTCTCATCGATAAATCCGATCCTCTCACT

Coding sequence (CDS)

GGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCAGCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGATCTGAAAGAGAACGCTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATGCGAGCGGAACGAACAGGGGGCGTTTTGGAAGAAGCGATCTGTTACCGAGCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCTGCACGAGTTTTAGCAAAAGCTGCCCTCCAAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCATCAGCTAAGCCTTATTTGGCCACTTCAGGAGCAACTGTTCATCGACATTATGGAGAAATCCTTTACGAAGGAGATACCTTAGTTACATTTATATATGAAAAATCACGATCTGGCGATATAACGCAGGGTCTTCCAAAAGTGGAACAAGTATTAGAAGTGCGTTCGATTGATTCAATATCAATGAACCTAGAAAAGAGAATTGAGGGTTGGAACGAGCGTATAACAAGAATTCTTGGAATTCCTTGGGGATTTTTGATTGGTGCTGAACTAACTATAGTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCGAAATTATTGTACGTCAAATAACATCAAAAGTGTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGATTGTTGCGAGCGGAACGAACAGGGCGTGCTTTGGAAGAAGCGATCTGTTACCGAGCCGTATTATTGGGAATAACAAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCCGCCCTCCGAGGTCGTATCGATTGGTTGAGAGGTCTGAAAGAGAACGTTGTTCTAGGAGGAATGATACCCGTTGGTACCGGATTCAGAGAATTAGCGCACCGTTCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCCAAAAAAATTTTTCGAGGGGGAAATGAGAGATATTTTATCTTTCTCTCTCATCGATAAATCCGATCCTCTCACT

Protein sequence

GRFGRSDLLPSVLLGITKASLNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKASLNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKASLNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKAALNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKAALNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKAALNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKASLNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDASGTNRGRFGRSDLLPSVLLGITKASLNTQSFCTSFSKSCPPRSYRLVERSERERCSRRNDTRWYRIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIPLETPPKKFFEGEMRDILSFSLIDKSDPLT

Homology

[Close]

BLAST of CmaCh04G020030 vs. ExPASy Swiss-Prot
Match: Q4VZP3 (DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 2.2e-140
Identity = 255/257 (99.22%), Postives = 256/257 (99.61%), Query Frame = 0


Query: 495  SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 554
            SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1109 SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1168

Query: 555  MNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 614
            M+LEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE
Sbjct: 1169 MSLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 1228

Query: 615  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 674
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ
Sbjct: 1229 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 1288

Query: 675  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP 734
            SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP
Sbjct: 1289 SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP 1348

Query: 735  LETPPKKFFEGEMRDIL 752
            LETPPKK FEGEMRDIL
Sbjct: 1349 LETPPKKIFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. ExPASy Swiss-Prot
Match: A6MM26 (DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla OX=153571 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.2e-132
Identity = 240/257 (93.39%), Postives = 247/257 (96.11%), Query Frame = 0


Query: 495  SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 554
            SAKPYLAT GATVH HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1104 SAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1163

Query: 555  MNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 614
            MNLEKR+EGWNERI RILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1164 MNLEKRVEGWNERIPRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 1223

Query: 615  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 674
            IIVRQITSKVLVSE+GMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIT+ASLNTQ
Sbjct: 1224 IIVRQITSKVLVSEEGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1283

Query: 675  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP 734
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGG+IPVGTGF+ L HRSRQHNNIP
Sbjct: 1284 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGLIPVGTGFKVLVHRSRQHNNIP 1343

Query: 735  LETPPKKFFEGEMRDIL 752
            LET  K  FEGEMRDIL
Sbjct: 1344 LETKKKNIFEGEMRDIL 1360

[Close]

BLAST of CmaCh04G020030 vs. ExPASy Swiss-Prot
Match: A6MMB2 (DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus OX=13006 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.2e-130
Identity = 236/257 (91.83%), Postives = 245/257 (95.33%), Query Frame = 0


Query: 495  SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 554
            SAKP+LAT GATVH HYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1102 SAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1161

Query: 555  MNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 614
            +NLEKR+EGWNERITRI+GIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1162 INLEKRVEGWNERITRIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 1221

Query: 615  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 674
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRA+LLGIT+ SLNTQ
Sbjct: 1222 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRTSLNTQ 1281

Query: 675  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP 734
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPVGTGF+ L HRSRQHNN P
Sbjct: 1282 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVHRSRQHNNSP 1341

Query: 735  LETPPKKFFEGEMRDIL 752
            LE   K  FEGEMRDIL
Sbjct: 1342 LEIKKKNLFEGEMRDIL 1358

[Close]

BLAST of CmaCh04G020030 vs. ExPASy Swiss-Prot
Match: Q0G9M9 (DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 1.6e-130
Identity = 238/257 (92.61%), Postives = 244/257 (94.94%), Query Frame = 0


Query: 495  SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 554
            SAKP+LAT GATVH HYGEIL EGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1097 SAKPHLATPGATVHGHYGEILSEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1156

Query: 555  MNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 614
            MNLEKRIEGWNE ITRILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1157 MNLEKRIEGWNEHITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 1216

Query: 615  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 674
            IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEE ICYRA+LLGIT+ASLNTQ
Sbjct: 1217 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEGICYRAILLGITRASLNTQ 1276

Query: 675  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP 734
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIPVGTGF+ L HRSRQHNNIP
Sbjct: 1277 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVHRSRQHNNIP 1336

Query: 735  LETPPKKFFEGEMRDIL 752
            LE   K  FEGEMRDIL
Sbjct: 1337 LEIKKKNLFEGEMRDIL 1353

[Close]

BLAST of CmaCh04G020030 vs. ExPASy Swiss-Prot
Match: A0ZZ25 (DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense OX=3634 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 1.7e-129
Identity = 237/256 (92.58%), Postives = 243/256 (94.92%), Query Frame = 0


Query: 495  SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 554
            SAKPYLAT GATVH HYGE LYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS
Sbjct: 1104 SAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSIS 1163

Query: 555  MNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIE 614
            MNLEKRIEGWNE ITRILGIPWGF+IGAELTIVQSR+SLVNKIQKVYRSQGV+IHNRHIE
Sbjct: 1164 MNLEKRIEGWNECITRILGIPWGFVIGAELTIVQSRLSLVNKIQKVYRSQGVQIHNRHIE 1223

Query: 615  IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQ 674
            IIVRQITSKVLVSEDGMSNVF PGELIGLLRAERTGRALEEAICYRAVLLGIT+ASLNTQ
Sbjct: 1224 IIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1283

Query: 675  SFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHRSRQHNNIP 734
            SFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGGMIP GTGF+ L HRSRQHNNI 
Sbjct: 1284 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPAGTGFKGLVHRSRQHNNIL 1343

Query: 735  LETPPKKFFEGEMRDI 751
            LET  K FF GEMRDI
Sbjct: 1344 LETKKKNFFGGEMRDI 1359

[Close]

BLAST of CmaCh04G020030 vs. ExPASy TrEMBL
Match: A0A0S2IDT9 (DNA-directed RNA polymerase OS=Cucurbita argyrosperma OX=34294 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.2e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. ExPASy TrEMBL
Match: A0A2H4T1Y3 (DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.2e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1097 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1156

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1157 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1216

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1217 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1276

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1277 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1336

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1337 SRQHNNIPLETPPKKFFEGEMRDIL 1361

[Close]

BLAST of CmaCh04G020030 vs. ExPASy TrEMBL
Match: A0A0S2IDY7 (DNA-directed RNA polymerase OS=Cucurbita argyrosperma var. palmeri OX=1094860 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.2e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. ExPASy TrEMBL
Match: A0A0S2IEZ1 (DNA-directed RNA polymerase OS=Cucurbita lundelliana OX=37650 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.2e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. ExPASy TrEMBL
Match: A0A0S2IG43 (DNA-directed RNA polymerase OS=Cucurbita okeechobeensis subsp. martinezii OX=184138 GN=rpoC2 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.2e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. NCBI nr
Match: ALO21718.1 (RpoC2 [Cucurbita argyrosperma] >ALO21790.1 RpoC2 [Cucurbita argyrosperma var. palmeri] >ALO21854.1 RpoC2 [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 505.4 bits (1300), Expect = 8.8e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. NCBI nr
Match: ALO22869.1 (RpoC2 [Cucurbita pedatifolia])

HSP 1 Score: 505.4 bits (1300), Expect = 8.8e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. NCBI nr
Match: ALO22384.1 (RpoC2 [Cucurbita moschata])

HSP 1 Score: 505.4 bits (1300), Expect = 8.8e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. NCBI nr
Match: YP_009447525.1 (RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase beta'' subunit [Cucurbita moschata])

HSP 1 Score: 505.4 bits (1300), Expect = 8.8e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1097 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1156

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1157 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1216

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1217 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1276

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1277 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1336

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1337 SRQHNNIPLETPPKKFFEGEMRDIL 1361

[Close]

BLAST of CmaCh04G020030 vs. NCBI nr
Match: ALO22260.1 (RpoC2 [Cucurbita lundelliana] >ALO22458.1 RpoC2 [Cucurbita okeechobeensis] >ALO22528.1 RpoC2 [Cucurbita okeechobeensis subsp. martinezii])

HSP 1 Score: 505.4 bits (1300), Expect = 8.8e-139
Identity = 257/265 (96.98%), Postives = 260/265 (98.11%), Query Frame = 0


Query: 487  RIQRISAPSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 546
            ++  +   SAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE
Sbjct: 1101 QVDSVVIRSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLE 1160

Query: 547  VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 606
            VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV
Sbjct: 1161 VRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGV 1220

Query: 607  EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 666
            EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI
Sbjct: 1221 EIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI 1280

Query: 667  TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 726
            TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR
Sbjct: 1281 TKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRELAHR 1340

Query: 727  SRQHNNIPLETPPKKFFEGEMRDIL 752
            SRQHNNIPLETPPKKFFEGEMRDIL
Sbjct: 1341 SRQHNNIPLETPPKKFFEGEMRDIL 1365

[Close]

BLAST of CmaCh04G020030 vs. TAIR 10
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 444.1 bits (1141), Expect = 2.2e-124
Identity = 239/284 (84.15%), Postives = 251/284 (88.38%), Query Frame = 0


Query: 488  IQRISA--PSAKPYLATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVL 547
            +QR SA   SAKPYLAT GA VH HY EILYEGDTLVTFIYEKSRSGDITQGLPKVEQVL
Sbjct: 1089 VQRDSAVIRSAKPYLATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVL 1148

Query: 548  EVRSIDSISMNLEKRIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQG 607
            EVRSIDSIS+NLEKRI+GWN+ ITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQG
Sbjct: 1149 EVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQG 1208

Query: 608  VEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLG 667
            V+IHNRHIEIIVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRAVLLG
Sbjct: 1209 VQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLG 1268

Query: 668  ITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVLGGMIPVGTGFRE-LA 727
            IT+ASLNTQSFISEASFQETARVLAKAALRGRIDWL+GLKENVVLGG+IP GTGF + L 
Sbjct: 1269 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLV 1328

Query: 728  HRSRQHNNIPLETPPKK--FFEGEMRDILSF------SLIDKSD 761
            H SRQH NI LE   K    FEG+MRDIL +      S I KSD
Sbjct: 1329 HCSRQHTNIILEKKTKNLALFEGDMRDILFYHREFCDSSISKSD 1372

[Close]

BLAST of CmaCh04G020030 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-06
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 655  EAICYRAVLLGITKASLNTQSF--ISEASFQETARVLAKAALRGRIDWLRGLKENVVLGG 714
            + + YR  L+ IT+  +N      +   SF+ET  +L  AA     D LRG+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 715  MIPVGTGFREL-AHRSRQHNNIPLETP 739
            + P+GTG  EL  +     N I L+ P
Sbjct: 1454 LAPIGTGDCELYLNDEMLKNAIELQLP 1480

[Close]

BLAST of CmaCh04G020030 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 45.4 bits (106), Expect = 2.3e-04
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 653  LEEAICYRAVLLGITKASLN--TQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 712
            L + + YR  +LGI +  +    +S + +ASF+ T   L  AA  G++D + G+ E V++
Sbjct: 1285 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1344

Query: 713  GGMIPVGTGFRELAHRS 728
            G  + +GTG  ++  R+
Sbjct: 1345 GIPMKLGTGILKVLQRT 1361

[Close]

BLAST of CmaCh04G020030 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 45.4 bits (106), Expect = 2.3e-04
Identity = 24/77 (31.17%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 653  LEEAICYRAVLLGITKASLN--TQSFISEASFQETARVLAKAALRGRIDWLRGLKENVVL 712
            L + + YR  +LGI +  +    +S + +ASF+ T   L  AA  G++D + G+ E V++
Sbjct: 1300 LADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIM 1359

Query: 713  GGMIPVGTGFRELAHRS 728
            G  + +GTG  ++  R+
Sbjct: 1360 GIPMKLGTGILKVLQRT 1376

The following BLAST results are available for this feature:

BLAST of CmaCh04G020030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP3	2.2e-140	99.22	DNA-directed RNA polymerase subunit beta'' OS=Cucumis sativus OX=3659 GN=rpoC2 P...	[more]
A6MM26	2.2e-132	93.39	DNA-directed RNA polymerase subunit beta'' OS=Buxus microphylla OX=153571 GN=rpo...	[more]
A6MMB2	1.2e-130	91.83	DNA-directed RNA polymerase subunit beta'' OS=Chloranthus spicatus OX=13006 GN=r...	[more]
Q0G9M9	1.6e-130	92.61	DNA-directed RNA polymerase subunit beta'' OS=Liriodendron tulipifera OX=3415 GN...	[more]
A0ZZ25	1.7e-129	92.58	DNA-directed RNA polymerase subunit beta'' OS=Gossypium barbadense OX=3634 GN=rp...	[more]

BLAST of CmaCh04G020030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IDT9	4.2e-139	96.98	DNA-directed RNA polymerase OS=Cucurbita argyrosperma OX=34294 GN=rpoC2 PE=3 SV=...	[more]
A0A2H4T1Y3	4.2e-139	96.98	DNA-directed RNA polymerase subunit beta'' OS=Cucurbita maxima OX=3661 GN=rpoC2 ...	[more]
A0A0S2IDY7	4.2e-139	96.98	DNA-directed RNA polymerase OS=Cucurbita argyrosperma var. palmeri OX=1094860 GN...	[more]
A0A0S2IEZ1	4.2e-139	96.98	DNA-directed RNA polymerase OS=Cucurbita lundelliana OX=37650 GN=rpoC2 PE=3 SV=1	[more]
A0A0S2IG43	4.2e-139	96.98	DNA-directed RNA polymerase OS=Cucurbita okeechobeensis subsp. martinezii OX=184...	[more]

BLAST of CmaCh04G020030 vs. NCBI nr


Match Name	E-value	Identity	Description
ALO21718.1	8.8e-139	96.98	RpoC2 [Cucurbita argyrosperma] >ALO21790.1 RpoC2 [Cucurbita argyrosperma var. pa...	[more]
ALO22869.1	8.8e-139	96.98	RpoC2 [Cucurbita pedatifolia]	[more]
ALO22384.1	8.8e-139	96.98	RpoC2 [Cucurbita moschata]	[more]
YP_009447525.1	8.8e-139	96.98	RNA polymerase beta'' subunit [Cucurbita moschata] >ATY69966.1 RNA polymerase be...	[more]
ALO22260.1	8.8e-139	96.98	RpoC2 [Cucurbita lundelliana] >ALO22458.1 RpoC2 [Cucurbita okeechobeensis] >ALO2...	[more]

BLAST of CmaCh04G020030 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00170.1	2.2e-124	84.15	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	1.9e-06	35.63	RNA polymerase II large subunit	[more]
AT5G60040.1	2.3e-04	31.17	nuclear RNA polymerase C1	[more]
AT5G60040.2	2.3e-04	31.17	nuclear RNA polymerase C1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.1790.20		coord: 535..672 e-value: 8.4E-35 score: 121.5
None	No IPR available	GENE3D	1.10.150.390		coord: 673..732 e-value: 4.4E-24 score: 85.8
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 511..739
None	No IPR available	PANTHER	PTHR19376:SF47	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA''	coord: 511..739
None	No IPR available	CDD	cd02655	RNAP_beta'_C	coord: 532..720 e-value: 1.95832E-78 score: 248.596
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 530..732
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 585..672 e-value: 1.7E-7 score: 31.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020030.1	CmaCh04G020030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding