CmaCh04G019800 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G019800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II CP43 reaction center protein
Location	Cma_Chr04: 11593417 .. 11594947 (+)
RNA-Seq Expression	CmaCh04G019800
Synteny	CmaCh04G019800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTTGCCGTATGAGGTTGGTTTACAGCAGGTACACCCTTTGTAACTTAATGGTATACCTAACCATATGGATTGACAAGTTTCTATTTGTTTGGAAGGATGCAACTTCTTAACCGCCGCTGTTTCAACTCCTGCTAATAGTTTAGCACACTCTTTCTTTGTTGTTACTATGGGGCCTGAAGCACAAGGAGATAGATTTGACTCCTTGGTGTCCATTACCATTAGGTGGTCTGTGGACTTTTGTTTCTCTCCACGGTTCGGACTAATAAGTTTCATGGTACGTTTGAACTTGCTTGATCTGTTCAATTGCTTTGTTTGTTTCCGTATTCCTAATGATTGATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTACTTTTCCTAGGAATGAAATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGGTTGCGGGTGTATTGGGCGCTGCTTGGCTATGCGCTATTCATGGTGCTACCGTAGAAAATCCCTTATTTGAAGGAAGATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATTTTTAGGGTTGCTTTTTCCACTAAAGGTTGGTTACATTTCTTTCTGTTATTTGTACCAGTAGCTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACACCTTCTATTCCCCGAGGAGGTTCTATACCCCGGGGAAAGGCTCTTTCTTTATTTAATGGAACTTTCTAGCTGGTGTCATGACCAAGAACTGGTTTGTTTCGCTTGGTGTGCCGGGAATGCCCGACTTATCCATTTATCCGATAAACTACTGGGGGCTCATCTAGCCCATGCCTGATTAATCGTATTCTAGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCTGAGAAAGAAGCCCATGCATGAACAAGGATGAATTTGACTTCACTTCCCCACCTAGCTACTCTAACTCTACTCTAGGTTGGGGCGTAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG

mRNA sequence

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGTAGCTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG

Coding sequence (CDS)

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTCGTAGCTGCTTTATGGCCGAGTGCTCTTGGAGTAGTTGGTCTTGCCCTGAACCTACGTGCCTATGACTTCGGTTCTCAGGCAATCCGTGCAGCAAGGGAAGATCCTGAATTTGAGACTTTCTATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTCCTGGTGGAGAAGTTATAGACACCTTTTCGTACTTTGTGTCCGTCTGGAGTACTTCACTGAATTTCCTCCGTCTGCAGTATTGGGTTTTGGCGCTATGTATCATGCACTTCTGGGACCCGAGACCCTTGAAGAATCTTTTCCCTTCTTCGGTTATGTGTGGAAAGATAGATAG

Protein sequence

MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYTLLYPESSLNRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR

Homology

[Close]

BLAST of CmaCh04G019800 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]

BLAST of CmaCh04G019800 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]

BLAST of CmaCh04G019800 vs. ExPASy Swiss-Prot
Match: A4QJB1 (Photosystem II CP43 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]

BLAST of CmaCh04G019800 vs. ExPASy Swiss-Prot
Match: A4QJJ5 (Photosystem II CP43 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]

BLAST of CmaCh04G019800 vs. ExPASy Swiss-Prot
Match: A1E9Z4 (Photosystem II CP43 reaction center protein OS=Agrostis stolonifera OX=63632 GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-12
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]

BLAST of CmaCh04G019800 vs. ExPASy TrEMBL
Match: A0A251VHA9 (Putative photosynthetic reaction centre, L/M, Photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr02g0041641 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.1e-23
Identity = 71/112 (63.39%), Postives = 77/112 (68.75%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRRSWWRS 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E     R+W  +
Sbjct: 31  VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGI---RAWMAA 90

Query: 93  YRHLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
                     L +  E  P  +LGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 91  QDQPH---ENLIFPEEVLP--LLGFGGIYHALLGPETLEESFPFFGYVWKDR 133

[Close]

BLAST of CmaCh04G019800 vs. ExPASy TrEMBL
Match: A0A4Y7JY71 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_008620 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 72/142 (50.70%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT------------------ 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT                  
Sbjct: 151 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGIRAWMAAQDQ 210

Query: 93  ----LLYPESSL----------NRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYH 143
               L++PE  L             +WW     L  L             +VLGFG +YH
Sbjct: 211 PHENLIFPEEVLPPLAGRDQETTGFAWWAGNARLINL-------------SVLGFGGIYH 270

[Close]

BLAST of CmaCh04G019800 vs. ExPASy TrEMBL
Match: A0A5N6L5A4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026756 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-23
Identity = 75/155 (48.39%), Postives = 83/155 (53.55%), Query Frame = 0


Query: 32  VVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR---- 91
           +V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R     
Sbjct: 145 LVTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEALAGRDQETT 204

Query: 92  --SWWRSYRHLFVLCVRL------------------------EYFTEFP----------- 143
             +WW     L  L  +L                         +  E P           
Sbjct: 205 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPH 264

[Close]

BLAST of CmaCh04G019800 vs. ExPASy TrEMBL
Match: A0A660KNR0 (Photosystem II D2 protein OS=Carpinus fangiana OX=176857 GN=FH972_010051 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 75/154 (48.70%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR----- 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R      
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEALAGRDQETTG 336

Query: 93  -SWWRSYRHLFVLCVRL------------------------EYFTEFP------------ 143
            +WW     L  L  +L                         +  E P            
Sbjct: 337 FAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 396

[Close]

BLAST of CmaCh04G019800 vs. ExPASy TrEMBL
Match: A0A6B9V8M8 (Photosystem II D2 protein OS=Arachis hypogaea OX=3818 GN=DS421_19g655850 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 74/151 (49.01%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPE---SSLNRRSW 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E         +W
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGRDQETTGFAW 336

Query: 93  WRSYRHLFVLCVRL------------------------EYFTEFP------------PSA 143
           W     L  L  +L                         +  E P             + 
Sbjct: 337 WAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATL 396

[Close]

BLAST of CmaCh04G019800 vs. NCBI nr
Match: RZC64931.1 (hypothetical protein C5167_008620 [Papaver somniferum])

HSP 1 Score: 118.2 bits (295), Expect = 5.6e-23
Identity = 72/142 (50.70%), Postives = 78/142 (54.93%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT------------------ 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT                  
Sbjct: 151 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEGIRAWMAAQDQ 210

Query: 93  ----LLYPESSL----------NRRSWWRSYRHLFVLCVRLEYFTEFPPSAVLGFGAMYH 143
               L++PE  L             +WW     L  L             +VLGFG +YH
Sbjct: 211 PHENLIFPEEVLPPLAGRDQETTGFAWWAGNARLINL-------------SVLGFGGIYH 270

[Close]

BLAST of CmaCh04G019800 vs. NCBI nr
Match: CAF1706430.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-22
Identity = 66/110 (60.00%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYTLLYPESSLNRRSWWRSYR 92
           VA LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT                 +
Sbjct: 163 VAGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYT-----------------K 222

Query: 93  HLFVLCVRLEYFTEFPPSAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           ++ +             + VLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 223 NILL-------------NEVLGFGGIYHALLGPETLEESFPFFGYVWKDR 241

[Close]

BLAST of CmaCh04G019800 vs. NCBI nr
Match: KAB8831628.1 (hypothetical protein FH972_026756 [Carpinus fangiana])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-22
Identity = 75/155 (48.39%), Postives = 83/155 (53.55%), Query Frame = 0


Query: 32  VVAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR---- 91
           +V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R     
Sbjct: 145 LVTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEALAGRDQETT 204

Query: 92  --SWWRSYRHLFVLCVRL------------------------EYFTEFP----------- 143
             +WW     L  L  +L                         +  E P           
Sbjct: 205 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPH 264

[Close]

BLAST of CmaCh04G019800 vs. NCBI nr
Match: KAG8363205.1 (hypothetical protein BUALT_BualtPtG0001800 [Buddleja alternifolia])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 75/154 (48.70%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR----- 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R      
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEAVAGRDQETTG 336

Query: 93  -SWWRSYRHLFVLCVRL------------------------EYFTEFP------------ 143
            +WW     L  L  +L                         +  E P            
Sbjct: 337 FAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 396

[Close]

BLAST of CmaCh04G019800 vs. NCBI nr
Match: KAE8037464.1 (hypothetical protein FH972_010051 [Carpinus fangiana])

HSP 1 Score: 116.3 bits (290), Expect = 2.1e-22
Identity = 75/154 (48.70%), Postives = 82/154 (53.25%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT--LLYPESSLNRR----- 92
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT  +L  E+   R      
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYTKNILLNEALAGRDQETTG 336

Query: 93  -SWWRSYRHLFVLCVRL------------------------EYFTEFP------------ 143
            +WW     L  L  +L                         +  E P            
Sbjct: 337 FAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHL 396

[Close]

BLAST of CmaCh04G019800 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-13
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 110 SAVLGFGAMYHALLGPETLEESFPFFGYVWKDR 143
           SAVLGFG +YHALLGPETLEESFPFFGYVWKDR
Sbjct: 122 SAVLGFGGIYHALLGPETLEESFPFFGYVWKDR 154

[Close]

BLAST of CmaCh04G019800 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-12
Identity = 36/42 (85.71%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VAALWPSALGVVGLALNLRAYDFGSQAIRAAREDPEFETFYT 75
           V  LW SALGVVGLALNLRAYDF SQ IRAA EDPEFETFYT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAA-EDPEFETFYT 317

The following BLAST results are available for this feature:

BLAST of CmaCh04G019800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYI1	6.1e-12	93.94	Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V538	6.1e-12	93.94	Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE...	[more]
A4QJB1	6.1e-12	93.94	Photosystem II CP43 reaction center protein OS=Aethionema cordifolium OX=434059 ...	[more]
A4QJJ5	6.1e-12	93.94	Photosystem II CP43 reaction center protein OS=Aethionema grandiflorum OX=72657 ...	[more]
A1E9Z4	6.1e-12	93.94	Photosystem II CP43 reaction center protein OS=Agrostis stolonifera OX=63632 GN=...	[more]

BLAST of CmaCh04G019800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A251VHA9	2.1e-23	63.39	Putative photosynthetic reaction centre, L/M, Photosystem antenna protein-like p...	[more]
A0A4Y7JY71	2.7e-23	50.70	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_008620 PE=3 SV=1	[more]
A0A5N6L5A4	7.9e-23	48.39	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_026756 PE=3 SV=1	[more]
A0A660KNR0	1.0e-22	48.70	Photosystem II D2 protein OS=Carpinus fangiana OX=176857 GN=FH972_010051 PE=3 SV...	[more]
A0A6B9V8M8	3.0e-22	49.01	Photosystem II D2 protein OS=Arachis hypogaea OX=3818 GN=DS421_19g655850 PE=3 SV...	[more]

BLAST of CmaCh04G019800 vs. NCBI nr


Match Name	E-value	Identity	Description
RZC64931.1	5.6e-23	50.70	hypothetical protein C5167_008620 [Papaver somniferum]	[more]
CAF1706430.1	1.6e-22	60.00	unnamed protein product [Brassica napus]	[more]
KAB8831628.1	1.6e-22	48.39	hypothetical protein FH972_026756 [Carpinus fangiana]	[more]
KAG8363205.1	2.1e-22	48.70	hypothetical protein BUALT_BualtPtG0001800 [Buddleja alternifolia]	[more]
KAE8037464.1	2.1e-22	48.70	hypothetical protein FH972_010051 [Carpinus fangiana]	[more]

BLAST of CmaCh04G019800 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	4.3e-13	93.94	photosystem II reaction center protein C	[more]
ATCG00270.1	3.6e-12	85.71	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 110..142
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 15..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019800.1	CmaCh04G019800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009521	photosystem
cellular_component	GO:0009536	plastid
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity