CmaCh04G019790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G019790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH-ubiquinone oxidoreductase chain 1
Location	Cma_Chr04: 11545494 .. 11547870 (+)
RNA-Seq Expression	CmaCh04G019790
Synteny	CmaCh04G019790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAACTCGTTGATGGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCTCCTTGTGAGCGCGTTTGGATCCGCGAAGGCAATCGCTCGGATGTTCTCCTAACCCAACCTGGGAACGGACTGGAGGGAATCGCAGCATGGGGAATGTCCGCATCTCGTCGCAAGGCTCATTTTAAATTATTGGTCGGGGGTTTATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGGTGCAAAGAACCATGGGGGTGACTGCAATGAGCAGAAATCTCACTTACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCAAGGGATCACCCAAGGAATGGACGAGCTGCAAGGAGGGAGGCAAGAACCATGCTTTCAAAGACCTAACCCAACCCAACGGTCCCGAATCTTATCTGAATTGCTAGAATAACTAACTAAGCCATGCCTACATATAGGCTCATTCTCCAAACGGCGCGGAGCCAAGCCTTTAGGTTGTTTAAGTAGATTGGGTGACAAATCGGCCATAGCAGTACTCCGGGATATAAATCAGGGCAACAAATGTCGAGCATACAACGATGCCGCCCATTTTCATTTCGTGTAAGTGCCCGCCAGAGGAAAGAAAGGGCTGTGTAGGTGATGGTGCGTTCCGCTTCTTATCTAGAGAGGGAGTAAGGAGTAAGTAGCTCAACTAATAGGGAGAGAGAGGGGCGAAGCTGTGAGACGAGAAGAGGAGCGCTGAAATCGTTCCTATTGGATTGGGTCGTGCGTGGCAGCTGGTAGAGATGAATGATGAATAAAGGCGGGCTGCTTCAACGGGACCTATTCTCTTAATAGGCGGCAAAGTAGAATAGGAAAGGGGCCGAGTGATGAGTGCCTTTTTAGCCTTTTTTTCTAAAGACTTTCATGTGAAGCTAACATGGCTCGCTACATAAAAGTATAGCCAAAGAAAGATGAGATGGGACAGACGGTCAGAGGCCGCAGCGGGACTACCATAGGAAAGCCCGCCCCCTCCCGCTAACATAGAAAGTGATTCCCATAACTAGTCTCTATGTGAATCTCTTCCCAACCAGCCGAATCGGGCCACCACTTAGGGTGGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCAGTCCAGCCGCCTCCTCGAAGTGGCTTGTCAACCACGCTTTCCCTCCCTCAAAATAATACTCCTCACCAAAAGCCCTTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCCACCCCCTCGAGAGCAAGATGCCGGCCGAGATGGAGCTGGAAGCCAACCTAGACTTTCTGGGGGCTTGTCCCAACATCTAAATCAAATTGTTGGCAGGCTAGAAAAGGAACCAGCCCAGCCTCGGAAATCAAGCTTTGCGTGGTATGCCCTGCCTATTCACTCGGACAATGCTATGAACACGAAAGTGTGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGCGCCTCGAAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGACGGGGACCCCAGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCACAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCTCAGAAGCGAAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGAATTCATTCTAACTGAAACAAGGGGTGGGTCTTTACCAACTTTCAAATATTCGCAATTTGAGGGAAGCCAAAAAAACCTCTCGAACCAAGGGATTGAGCAGCGCGAAAGCCACGATCAAACTCTATCTAATAAGGGCGTATTAGAGTGGCGTTAGCGCCCCCTTCCCCTTACCCCTAAACAAAAAGGTTTTTCAGAAAGTTGTCTACGCCTTTTGAAAACCTGACTATTAATAATAATAAAGGGCAAAATGCGCTCAAACAACCAACCTATCTGACTAATAAGAAGAAAGAAAGGGCCCTATCTAAGCTCTCTCGTTGTAAAGCTACAGCTCAAAAGTCGGCCTTACCTTTTATGTTTGTTATTAGTAAAGCCTAAAGCCCTTGACTAATAGAAAGGGATTTTCTTGCTTGTTTAGTAAAATCACGCTTTTCATTTTGATAGGAGTAGATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAA

mRNA sequence

ATGATCAACTCGTTGATGGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCTCCTTTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCACAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCTCAGAAGCGAAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGAATTCATTCTAACTGAAACAAGGGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAA

Coding sequence (CDS)

ATGATCAACTCGTTGATGGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTACCTTATGAAGTCTCTATCGGTCTGATTCTTATTGTGCTCCTTTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCACAAAAGCAGATATGGTCTGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCTGTTTGATCTCTCAGAAGCGAAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGAATTCATTCTAACTGAAACAAGGGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAA

Protein sequence

MINSLMVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREFILTETRGAGHSSFFIRN

Homology

[Close]

BLAST of CmaCh04G019790 vs. ExPASy Swiss-Prot
Match: P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-46
Identity = 102/122 (83.61%), Postives = 106/122 (86.89%), Query Frame = 0


Query: 6   MVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQ 65
           ++G F     +  FLGALRSAAQMVPYEVSIGLILIV     LICVGPRNSSEIVMAQKQ
Sbjct: 97  LLGTFTPLYSKYAFLGALRSAAQMVPYEVSIGLILIVR----LICVGPRNSSEIVMAQKQ 156

Query: 66  IWSGIPLFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANV 125
           IWSGIPLFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYA DAILNSPLLAEANV
Sbjct: 157 IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLLAEANV 214

Query: 126 PG 128
           PG
Sbjct: 217 PG 214

[Close]

BLAST of CmaCh04G019790 vs. ExPASy Swiss-Prot
Match: Q01300 (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 9.7e-37
Identity = 85/99 (85.86%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVG RNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGSRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]

BLAST of CmaCh04G019790 vs. ExPASy Swiss-Prot
Match: P92558 (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana OX=3702 GN=ND1 PE=1 SV=4)

HSP 1 Score: 138.3 bits (347), Expect = 7.2e-32
Identity = 79/99 (79.80%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFIS LAETNRA FDL EA+AE VAGYNVEY+
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221

[Close]

BLAST of CmaCh04G019790 vs. ExPASy Swiss-Prot
Match: P31839 (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.2e-32
Identity = 79/99 (79.80%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 133 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGSCNLSEIVMAQKQIWFGIP 192

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFIS LAETNRA FDL EA+AE VAGYNVEY+
Sbjct: 193 LFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 227

[Close]

BLAST of CmaCh04G019790 vs. ExPASy Swiss-Prot
Match: Q01148 (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum OX=4565 GN=ND1 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.2e-32
Identity = 79/99 (79.80%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMFFIS LAETNRA FDL EA+AE VAGYNVEY+
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221

[Close]

BLAST of CmaCh04G019790 vs. ExPASy TrEMBL
Match: A0A6M3TXR2 (NADH-ubiquinone oxidoreductase chain 1 OS=Cannabis sativa OX=3483 GN=nad1 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.6e-50
Identity = 113/127 (88.98%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 133 SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 192

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNSPLLAEANVPGSR  
Sbjct: 193 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 252

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 253 ILTETRG 255

[Close]

BLAST of CmaCh04G019790 vs. ExPASy TrEMBL
Match: A0A7M1VEF2 (NADH-ubiquinone oxidoreductase chain 1 OS=Neolamarckia cadamba OX=153762 GN=nad1 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.0e-49
Identity = 112/127 (88.19%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 249

[Close]

BLAST of CmaCh04G019790 vs. ExPASy TrEMBL
Match: A0A3G6XMH7 (NADH-ubiquinone oxidoreductase chain 1 OS=Haberlea rhodopensis OX=121482 GN=nad1 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.9e-49
Identity = 112/127 (88.19%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILIV L TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILIVRLVTVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANV GSR  
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVLGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 253

[Close]

BLAST of CmaCh04G019790 vs. ExPASy TrEMBL
Match: A0A6M9TTH2 (NADH-ubiquinone oxidoreductase chain 1 OS=Mirabilis himalaica OX=482968 GN=nad1 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.4e-46
Identity = 107/120 (89.17%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 19  FLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVM 78
           FLGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVM
Sbjct: 113 FLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVM 172

Query: 79  FFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREFILTETRG 138
           FFIS LAETNRA FDL EA+AE VAGYNVEYARDAILNS LLAEANVPGSR  ILTET G
Sbjct: 173 FFISCLAETNRAPFDLPEAEAELVAGYNVEYARDAILNSSLLAEANVPGSRGLILTETGG 228

[Close]

BLAST of CmaCh04G019790 vs. ExPASy TrEMBL
Match: V9PBJ9 (NADH-ubiquinone oxidoreductase chain 1 OS=Vaccinium macrocarpon OX=13750 GN=nad1 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.1e-46
Identity = 108/127 (85.04%), Postives = 110/127 (86.61%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILIV L TVLICVG  N SEIVMAQKQIW GIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILIVRLVTVLICVGSCNLSEIVMAQKQIWFGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFIS LAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISCLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 253

[Close]

BLAST of CmaCh04G019790 vs. NCBI nr
Match: QWQ49904.1 (NADH dehydrogenase subunit 1 [Zelkova schneideriana])

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-50
Identity = 113/127 (88.98%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 97  SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 156

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNSPLLAEANVPGSR  
Sbjct: 157 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 216

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 217 ILTETRG 219

[Close]

BLAST of CmaCh04G019790 vs. NCBI nr
Match: QJE38167.1 (NADH dehydrogenase subunit 1 [Cannabis sativa])

HSP 1 Score: 207.6 bits (527), Expect = 7.3e-50
Identity = 113/127 (88.98%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 133 SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 192

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNSPLLAEANVPGSR  
Sbjct: 193 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 252

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 253 ILTETRG 255

[Close]

BLAST of CmaCh04G019790 vs. NCBI nr
Match: QUV77371.1 (NADH dehydrogenase subunit 1 [Markhamia cauda-felina])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 112/127 (88.19%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +   LGALRSAAQMVPYEVSIGLILIV LYTVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYASLGALRSAAQMVPYEVSIGLILIVRLYTVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAI +S LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAIQHSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 253

[Close]

BLAST of CmaCh04G019790 vs. NCBI nr
Match: QUV77403.1 (NADH dehydrogenase subunit 1 [Dolichandrone spathacea])

HSP 1 Score: 206.8 bits (525), Expect = 1.3e-49
Identity = 112/127 (88.19%), Postives = 115/127 (90.55%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +   LGALRSAAQMVPYEVSIGLILIV LYTVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYASLGALRSAAQMVPYEVSIGLILIVRLYTVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAI +S LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAIQHSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 253

[Close]

BLAST of CmaCh04G019790 vs. NCBI nr
Match: QOS02892.1 (putative NADH dehydrogenase subunit 1 [Neolamarckia cadamba])

HSP 1 Score: 204.5 bits (519), Expect = 6.2e-49
Identity = 112/127 (88.19%), Postives = 114/127 (89.76%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMVPYEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVPYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYARDAILNSPLLAEANVPGSREF 131
           LFPVLVMFFISRLAETNRA FDL EA+AESVAGYNVEYARDAILNS LLAEANVPGSR  
Sbjct: 187 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLLAEANVPGSRGL 246

Query: 132 ILTETRG 139
           ILTETRG
Sbjct: 247 ILTETRG 249

[Close]

BLAST of CmaCh04G019790 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMF ISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]

BLAST of CmaCh04G019790 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMF ISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]

BLAST of CmaCh04G019790 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-37
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 12  SSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVMAQKQIWSGIP 71
           SS  +  FLGALRSAAQMV YEVSIGLILI    TVLICVGPRNSSEIVMAQKQIWSGIP
Sbjct: 127 SSNSKYAFLGALRSAAQMVSYEVSIGLILI----TVLICVGPRNSSEIVMAQKQIWSGIP 186

Query: 72  LFPVLVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           LFPVLVMF ISRLAETNRA FDL EA+AESVAGYNVEY+
Sbjct: 187 LFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEYS 221

[Close]

BLAST of CmaCh04G019790 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 52.4 bits (124), Expect = 3.7e-07
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 2   INSLMVGNFHSSIFEICFLGALRSAAQMVPYEVSIGLILIVLLYTVLICVGPRNSSEIVM 61
           I  LM G  + S  +  FLG LR+AAQ + YE+ + L ++    ++ +     ++ +IV 
Sbjct: 143 IGLLMSG--YGSNNKYSFLGGLRAAAQSISYEIPLTLCVL----SISLLSNSLSTVDIVE 202

Query: 62  AQKQ--IWS-GIPLFPV-LVMFFISRLAETNRALFDLSEAKAESVAGYNVEYA 111
           AQ +   W   +   P+  ++F IS LAE  R  FDL EA+ E +AGY  EY+
Sbjct: 203 AQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELIAGYQTEYS 249

The following BLAST results are available for this feature:

BLAST of CmaCh04G019790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08834	1.8e-46	83.61	NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 ...	[more]
Q01300	9.7e-37	85.86	NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV...	[more]
P92558	7.2e-32	79.80	NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana OX=3702 GN=ND1 PE...	[more]
P31839	7.2e-32	79.80	NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE...	[more]
Q01148	7.2e-32	79.80	NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum OX=4565 GN=ND1 PE=2 ...	[more]

BLAST of CmaCh04G019790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3TXR2	3.6e-50	88.98	NADH-ubiquinone oxidoreductase chain 1 OS=Cannabis sativa OX=3483 GN=nad1 PE=3 S...	[more]
A0A7M1VEF2	3.0e-49	88.19	NADH-ubiquinone oxidoreductase chain 1 OS=Neolamarckia cadamba OX=153762 GN=nad1...	[more]
A0A3G6XMH7	3.9e-49	88.19	NADH-ubiquinone oxidoreductase chain 1 OS=Haberlea rhodopensis OX=121482 GN=nad1...	[more]
A0A6M9TTH2	1.4e-46	89.17	NADH-ubiquinone oxidoreductase chain 1 OS=Mirabilis himalaica OX=482968 GN=nad1 ...	[more]
V9PBJ9	4.1e-46	85.04	NADH-ubiquinone oxidoreductase chain 1 OS=Vaccinium macrocarpon OX=13750 GN=nad1...	[more]

BLAST of CmaCh04G019790 vs. NCBI nr


Match Name	E-value	Identity	Description
QWQ49904.1	7.3e-50	88.98	NADH dehydrogenase subunit 1 [Zelkova schneideriana]	[more]
QJE38167.1	7.3e-50	88.98	NADH dehydrogenase subunit 1 [Cannabis sativa]	[more]
QUV77371.1	1.3e-49	88.19	NADH dehydrogenase subunit 1 [Markhamia cauda-felina]	[more]
QUV77403.1	1.3e-49	88.19	NADH dehydrogenase subunit 1 [Dolichandrone spathacea]	[more]
QOS02892.1	6.2e-49	88.19	putative NADH dehydrogenase subunit 1 [Neolamarckia cadamba]	[more]

BLAST of CmaCh04G019790 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01120.1	3.4e-37	84.85	NADH dehydrogenase 1B	[more]
ATMG00516.1	3.4e-37	84.85	NADH dehydrogenase 1C	[more]
ATMG01275.1	3.4e-37	84.85	NADH dehydrogenase 1A	[more]
ATCG01100.1	3.7e-07	35.40	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 19..110 e-value: 1.7E-23 score: 83.4
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 20..139
None	No IPR available	PANTHER	PTHR11432:SF17	NADH-QUINONE OXIDOREDUCTASE PROTEIN	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019790.1	CmaCh04G019790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0016020	membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity