CmaCh04G019750 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G019750
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CCHC-type domain-containing protein
Location	Cma_Chr04: 11442054 .. 11442983 (+)
RNA-Seq Expression	CmaCh04G019750
Synteny	CmaCh04G019750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATCCAGACAACAATACTGACATTACTGATGCACGATTGAGAGAAGCCCAACAACGAACAATGGAAAGACTAATTCGAGGAAGAGAAGAGTTGACTGATCGAATAGGTAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCATTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTAAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACACAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATTCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAAAGTTGATTATAAGCATAGAAATCAAGATTAA

mRNA sequence

ATGGAAAATCCAGACAACAATACTGACATTACTGATGCACGATTGAGAGAAGCCCAACAACGAACAATGGAAAGACTAATTCGAGGAAGAGAAGAGTTGACTGATCGAATAGGTAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCATTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTAAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACACAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATTCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAAAGTTGATTATAAGCATAGAAATCAAGATTAA

Coding sequence (CDS)

ATGGAAAATCCAGACAACAATACTGACATTACTGATGCACGATTGAGAGAAGCCCAACAACGAACAATGGAAAGACTAATTCGAGGAAGAGAAGAGTTGACTGATCGAATAGGTAGATTGGAGATTCAAAATCAAGCTCGACAGAGGATTCCATTACCTACGCCCTCAACCGATACATATGAGGGCGACAATTCTGATCACCACGAGGATAATCCACATGTGGTTGGTCATGGCTTGATGCGAGGGAGAGACCATGGAAGAAGGTATCATAATTTACAACAACGAGTTCCTTATGATGATAGAATTGATCGTAACGTGGGGAGCATCAAATTAAAACTTCCCAAGTTTTATGGCAAAACCGATCCAGAGGAGTACCTTCAATGGGAGAAAACGGTGGAGTCGGTGTTAAACTGTCATAATTTTAGTGATGAAAAGAAGGTACTGTTATGCATTGCTCAATTCAAACAATATGCTCAAATTTGGTGGGATAAATTGATGTCAAGTAGGAGAAGAAATCTTGAAGCACCAATTGATTCATGGGTCGAGTTCAAAGAGTCCATGAGGAAGCGTTTTGTTCCACAATATTTTCACCGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGACACAAATCTGTGGAGGATTATTACAAGGAGATGGATACATTGATGGATCGACTTGAACTCGATGAGGACATGGAGGCTCTCATGGCGCGGTTTCTTAATGGGTTAAACACAGAGATTGCGGACAAGACTGATTTACAGCCTTATTCTAATATTGAGGAGTTGTTGCACATTGCAATTAAGATCGAGAGGCAAATTCAACGAAGGTCTCAACGGTATTCTTCTAAAACTTTTCCCAATTCTACTTCTACATGGAAAAGGGATAGTAAGAAAGTTGATTATAAGCATAGAAATCAAGATTAA

Protein sequence

MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTYEGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKKVDYKHRNQD

Homology

[Close]

BLAST of CmaCh04G019750 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.9e-107
Identity = 209/324 (64.51%), Postives = 244/324 (75.31%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLP----TPS 60
           M N     +I+DAR REA + T+ER+IR  E LT+RIGRLE QNQA  R+P P       
Sbjct: 1   MANLGXEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMD 60

Query: 61  TDTYEGDNSDHHEDNPHV-----------VGHGLMRGRDHGRRYHNLQQRVPYDDRIDRN 120
            D YEGD SDH ED+              VG GL RGR  GR YHN Q+    + ++DRN
Sbjct: 61  EDEYEGDGSDHWEDDQATVLAXPRGGDXHVGXGLDRGRGRGRGYHNFQRAPRANAQVDRN 120

Query: 121 VGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKL 180
           +G+IKLKL KFYGKTDPE Y+QW K VE V +CHNFS+EKKV LC+AQFK YA  WWDKL
Sbjct: 121 LGNIKLKLXKFYGKTDPEAYIQWXKEVEFVFDCHNFSEEKKVRLCLAQFKDYAVTWWDKL 180

Query: 181 MSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLM 240
           MS RRRNLEAPIDSW EFKE +R+RFVP++FHRD AQKLQ L+QG KSVEDYYKEMDTLM
Sbjct: 181 MSIRRRNLEAPIDSWYEFKELLRRRFVPRHFHRDTAQKLQVLRQGSKSVEDYYKEMDTLM 240

Query: 241 DRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSK 300
           +RL+L+EDME LMARFLNGLN EIADK DLQPY NIEE+LH+AIKIE+Q+QRRSQ YS+K
Sbjct: 241 NRLDLEEDMENLMARFLNGLNKEIADKVDLQPYFNIEEMLHLAIKIEKQLQRRSQGYSTK 300

Query: 301 TFPNSTSTWKRDSKKVDYKHRNQD 310
            F +S+STWK DSK  D K RN++
Sbjct: 301 PFSHSSSTWKTDSKSADSKLRNRE 324

[Close]

BLAST of CmaCh04G019750 vs. ExPASy TrEMBL
Match: A0A6J1I7T3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX=3661 GN=LOC111469948 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 2.5e-98
Identity = 208/309 (67.31%), Postives = 213/309 (68.93%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTY 60
           MENPDNNTDITDARLREAQQRTMERLIRG EELTDRIGRLEIQNQARQRIPLPTPSTDTY
Sbjct: 1   MENPDNNTDITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPLPTPSTDTY 60

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           EGDNSDHHEDNP V                                              
Sbjct: 61  EGDNSDHHEDNPQV---------------------------------------------- 120

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
                                                     +KLMSSRRRNLEAPIDSW
Sbjct: 121 ------------------------------------------NKLMSSRRRNLEAPIDSW 180

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
           VEFKESMRKRFVPQYFHRDMAQKLQALKQG KSVEDYYKEMDTLMD+LELDEDMEALMA 
Sbjct: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGRKSVEDYYKEMDTLMDQLELDEDMEALMAW 221

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKK 300
           FLNGLNTEIA+KTDLQPYSNIEELLHI IKIERQIQRRSQRYSSKTFPNSTS WKR SK 
Sbjct: 241 FLNGLNTEIAEKTDLQPYSNIEELLHIVIKIERQIQRRSQRYSSKTFPNSTSIWKRGSKN 221

Query: 301 VDYKHRNQD 310
           +DYKHRNQ+
Sbjct: 301 IDYKHRNQE 221

[Close]

BLAST of CmaCh04G019750 vs. ExPASy TrEMBL
Match: A0A6J1DFN2 (uncharacterized protein LOC111020057 OS=Momordica charantia OX=3673 GN=LOC111020057 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 6.9e-88
Identity = 165/228 (72.37%), Postives = 196/228 (85.96%), Query Frame = 0


Query: 76  GHGLMRGRDHGRRYHNLQQRVPYDD-RIDRNVGSIKLKLPKFYGKTDPEEYLQWEKTVES 135
           GH L RGR  G + HN Q+R P ++ ++DRN+GSIKLK+ KF+GKTDPEEYLQWE  VES
Sbjct: 39  GHRLDRGRGRGIQ-HNYQRRAPREEAQVDRNLGSIKLKIQKFFGKTDPEEYLQWENEVES 98

Query: 136 VLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQ 195
           V  CHNFS+EKK+ L +A+FKQYAQ WWDKLMS RRRNLEAPI SW EF ES+++RFVP+
Sbjct: 99  VFVCHNFSEEKKIQLFVARFKQYAQTWWDKLMSRRRRNLEAPIVSWYEFNESLKERFVPK 158

Query: 196 YFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMARFLNGLNTEIADKTD 255
           +F RDMAQKLQAL+QG+KSVEDYYKE+DTLMDR++LDEDM+ LMARFLN LN EIADK D
Sbjct: 159 HFERDMAQKLQALRQGNKSVEDYYKEIDTLMDRIDLDEDMKQLMARFLNDLNKEIADKVD 218

Query: 256 LQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKKVD 303
           LQPY +IEE+LH+AIKIERQIQR+SQRYSSK F NS++TWK+DSK  D
Sbjct: 219 LQPYFDIEEMLHLAIKIERQIQRKSQRYSSKQFSNSSATWKKDSKNSD 265

[Close]

BLAST of CmaCh04G019750 vs. ExPASy TrEMBL
Match: A0A6J1I8S0 (uncharacterized protein LOC111472489 OS=Cucurbita maxima OX=3661 GN=LOC111472489 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 3.4e-71
Identity = 141/147 (95.92%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 163 DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMD 222
           DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFH DMAQKLQALKQG KSVEDYYKEMD
Sbjct: 1   DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHPDMAQKLQALKQGRKSVEDYYKEMD 60

Query: 223 TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRY 282
           TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRY
Sbjct: 61  TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRY 120

Query: 283 SSKTFPNSTSTWKRDSKKVDYKHRNQD 310
           SSKTFPNSTSTWKRDSK +DY HRNQ+
Sbjct: 121 SSKTFPNSTSTWKRDSKNIDYTHRNQE 147

[Close]

BLAST of CmaCh04G019750 vs. ExPASy TrEMBL
Match: A0A6J1EQJ1 (uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC111436530 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 140/147 (95.24%), Postives = 143/147 (97.28%), Query Frame = 0


Query: 163 DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMD 222
           DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYF RDMAQKLQALKQG KSVEDYYKEMD
Sbjct: 1   DKLMSSRRRNLEAPIDSWVEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMD 60

Query: 223 TLMDRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRY 282
           TLMDRLELDEDMEALMARFLNGLN EIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRY
Sbjct: 61  TLMDRLELDEDMEALMARFLNGLNIEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRY 120

Query: 283 SSKTFPNSTSTWKRDSKKVDYKHRNQD 310
           SSKTFPNSTSTWK+DSK +DYKHRNQ+
Sbjct: 121 SSKTFPNSTSTWKKDSKNIDYKHRNQE 147

[Close]

BLAST of CmaCh04G019750 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 592.8 bits (1527), Expect = 1.7e-165
Identity = 293/309 (94.82%), Postives = 300/309 (97.09%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTY 60
           MENPD+NT+ITDARLREAQQRTMERLIRG EELTDRIGRLEIQNQARQRIP PTPSTDTY
Sbjct: 1   MENPDDNTNITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQPTPSTDTY 60

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           EGDNSDHHEDNPH VGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT
Sbjct: 61  EGDNSDHHEDNPHAVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DPEEYLQWEKTVESV NCHNFSD+KKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPEEYLQWEKTVESVFNCHNFSDKKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
            EFKESMRKRFVPQYF RDMAQKLQALKQG KSVEDYYKEMDTLMDRL+LDEDMEALMAR
Sbjct: 181 YEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMAR 240

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKK 300
           FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWK+DSK 
Sbjct: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKN 300

Query: 301 VDYKHRNQD 310
           +DYKHRN +
Sbjct: 301 IDYKHRNPE 309

[Close]

BLAST of CmaCh04G019750 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 589.7 bits (1519), Expect = 1.4e-164
Identity = 290/309 (93.85%), Postives = 299/309 (96.76%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTY 60
           MENPD+NTDITDARLREAQQRTM+RLIRG EELTDRIGRLEIQNQARQRIPLP PSTDTY
Sbjct: 1   MENPDDNTDITDARLREAQQRTMKRLIRGIEELTDRIGRLEIQNQARQRIPLPAPSTDTY 60

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           EGDNSDHHEDNPH VGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT
Sbjct: 61  EGDNSDHHEDNPHAVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DPEEYL+WEKT+ESV  CHNFSD+KKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPEEYLEWEKTIESVFKCHNFSDKKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
            EFKESMRKRFVPQYF RDMAQKLQALKQG KSVEDYYKEMDTLMDRL+LDEDMEALMAR
Sbjct: 181 YEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLDLDEDMEALMAR 240

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKK 300
           FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWK+DSK 
Sbjct: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKN 300

Query: 301 VDYKHRNQD 310
           +DYKHRN +
Sbjct: 301 IDYKHRNPE 309

[Close]

BLAST of CmaCh04G019750 vs. NCBI nr
Match: XP_023520282.1 (uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 577.4 bits (1487), Expect = 7.4e-161
Identity = 287/309 (92.88%), Postives = 293/309 (94.82%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTY 60
           MENPD+NT+ITDARLREAQQRTMERLIRG EELTDRIGRLEIQNQARQRIP PTPSTDTY
Sbjct: 1   MENPDDNTNITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQPTPSTDTY 60

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           EGDNSDHHEDNPH VGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT
Sbjct: 61  EGDNSDHHEDNPHAVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DPEEYLQWEKTVESV NCHNFSD+KKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPEEYLQWEKTVESVFNCHNFSDKKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
            EFKESMRKRFVPQYF RDMAQKLQALKQG KSVEDYYKEMDTLMDRL        LMAR
Sbjct: 181 YEFKESMRKRFVPQYFQRDMAQKLQALKQGRKSVEDYYKEMDTLMDRLASMRTWSPLMAR 240

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKK 300
           FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWK+DSK 
Sbjct: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKKDSKN 300

Query: 301 VDYKHRNQD 310
           +DYKHRNQ+
Sbjct: 301 IDYKHRNQE 309

[Close]

BLAST of CmaCh04G019750 vs. NCBI nr
Match: XP_023541047.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 573.5 bits (1477), Expect = 1.1e-159
Identity = 283/309 (91.59%), Postives = 296/309 (95.79%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLPTPSTDTY 60
           MENPD+NT+ITDARLREAQQRTMERLIRG EELTDRIGRLEIQNQARQR PLPTPST+TY
Sbjct: 1   MENPDDNTNITDARLREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRTPLPTPSTNTY 60

Query: 61  EGDNSDHHEDNPHVVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120
           EGDN DHHEDNPH VGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT
Sbjct: 61  EGDNFDHHEDNPHAVGHGLMRGRDHGRRYHNLQQRVPYDDRIDRNVGSIKLKLPKFYGKT 120

Query: 121 DPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180
           DP+EY +WEKTV+SV NCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW
Sbjct: 121 DPDEYPEWEKTVDSVFNCHNFSDEKKVLLCIAQFKQYAQIWWDKLMSSRRRNLEAPIDSW 180

Query: 181 VEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLMDRLELDEDMEALMAR 240
           VEFKESMRK FVPQYF RDMAQKLQALKQG KS EDYYKEMDTLMDRLELDE+MEALMAR
Sbjct: 181 VEFKESMRKCFVPQYFQRDMAQKLQALKQGRKSXEDYYKEMDTLMDRLELDEEMEALMAR 240

Query: 241 FLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSKTFPNSTSTWKRDSKK 300
           FLNGLNT+IADKTDLQPYSNIEELLHIAIKI+RQIQRRSQRYSSKTF NSTS WK+D+K 
Sbjct: 241 FLNGLNTKIADKTDLQPYSNIEELLHIAIKIKRQIQRRSQRYSSKTFSNSTSKWKKDTKN 300

Query: 301 VDYKHRNQD 310
           +DYKHRNQ+
Sbjct: 301 IDYKHRNQE 309

[Close]

BLAST of CmaCh04G019750 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 397.9 bits (1021), Expect = 8.0e-107
Identity = 209/324 (64.51%), Postives = 244/324 (75.31%), Query Frame = 0


Query: 1   MENPDNNTDITDARLREAQQRTMERLIRGREELTDRIGRLEIQNQARQRIPLP----TPS 60
           M N     +I+DAR REA + T+ER+IR  E LT+RIGRLE QNQA  R+P P       
Sbjct: 1   MANLGXEGNISDARRREALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMD 60

Query: 61  TDTYEGDNSDHHEDNPHV-----------VGHGLMRGRDHGRRYHNLQQRVPYDDRIDRN 120
            D YEGD SDH ED+              VG GL RGR  GR YHN Q+    + ++DRN
Sbjct: 61  EDEYEGDGSDHWEDDQATVLAXPRGGDXHVGXGLDRGRGRGRGYHNFQRAPRANAQVDRN 120

Query: 121 VGSIKLKLPKFYGKTDPEEYLQWEKTVESVLNCHNFSDEKKVLLCIAQFKQYAQIWWDKL 180
           +G+IKLKL KFYGKTDPE Y+QW K VE V +CHNFS+EKKV LC+AQFK YA  WWDKL
Sbjct: 121 LGNIKLKLXKFYGKTDPEAYIQWXKEVEFVFDCHNFSEEKKVRLCLAQFKDYAVTWWDKL 180

Query: 181 MSSRRRNLEAPIDSWVEFKESMRKRFVPQYFHRDMAQKLQALKQGHKSVEDYYKEMDTLM 240
           MS RRRNLEAPIDSW EFKE +R+RFVP++FHRD AQKLQ L+QG KSVEDYYKEMDTLM
Sbjct: 181 MSIRRRNLEAPIDSWYEFKELLRRRFVPRHFHRDTAQKLQVLRQGSKSVEDYYKEMDTLM 240

Query: 241 DRLELDEDMEALMARFLNGLNTEIADKTDLQPYSNIEELLHIAIKIERQIQRRSQRYSSK 300
           +RL+L+EDME LMARFLNGLN EIADK DLQPY NIEE+LH+AIKIE+Q+QRRSQ YS+K
Sbjct: 241 NRLDLEEDMENLMARFLNGLNKEIADKVDLQPYFNIEEMLHLAIKIEKQLQRRSQGYSTK 300

Query: 301 TFPNSTSTWKRDSKKVDYKHRNQD 310
            F +S+STWK DSK  D K RN++
Sbjct: 301 PFSHSSSTWKTDSKSADSKLRNRE 324

The following BLAST results are available for this feature:

BLAST of CmaCh04G019750 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G019750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWE9	3.9e-107	64.51	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia...	[more]
A0A6J1I7T3	2.5e-98	67.31	LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX...	[more]
A0A6J1DFN2	6.9e-88	72.37	uncharacterized protein LOC111020057 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1I8S0	3.4e-71	95.92	uncharacterized protein LOC111472489 OS=Cucurbita maxima OX=3661 GN=LOC111472489...	[more]
A0A6J1EQJ1	1.0e-70	95.24	uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC1114365...	[more]

BLAST of CmaCh04G019750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520835.1	1.7e-165	94.82	LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp....	[more]
XP_023553652.1	1.4e-164	93.85	uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]	[more]
XP_023520282.1	7.4e-161	92.88	uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]	[more]
XP_023541047.1	1.1e-159	91.59	LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp....	[more]
XP_022157414.1	8.0e-107	64.51	LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]	[more]

BLAST of CmaCh04G019750 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 280..294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..84
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 87..299
None	No IPR available	PANTHER	PTHR35046:SF6	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 87..299
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 153..247 e-value: 3.8E-21 score: 75.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019750.1	CmaCh04G019750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding