CmaCh04G019670 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G019670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Photosystem II D2 protein
Location	Cma_Chr04: 11157359 .. 11158389 (+)
RNA-Seq Expression	CmaCh04G019670
Synteny	CmaCh04G019670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTAGGTTGGTCCGGTCTATTTCTCTTTCCTTGTGCCTATTTTATTGTCGTAGGAGGTTGGTTTACAGGTACACCCTTTATAACTTAATGGTATATCTAACCGTATGGATTGGCAAGTTCCTATTTGTTTGGAAGGATGCAACTTCTTAACCGCCGCTGTTTCGACTCCTGCTAATAGTTTAGCACACTCTTTCTTTGTTGTTACTATGGGGGCCTGAAGCACAAGGAGATAGATTTGACTCCTTGATGTCCATTACCATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCACAGTTCGGACTAATAGGTTTCATGGTACGTCTAATCTTGCTCGATCCGTTCAATTGCTTTGTTTGTTTCCGTATTCCTGATGATTGATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATGTTTCGATTCATCCTACTTTTCCCGGGAATGAAATAATTGAACATTGAACCCATTTCATATGATGGGAGTTGGTTGCGGGAGTATTGGGCGTTGCTTGGCTATGGCGCTATTCATGGTGCTACCCTAGAAAATCCCTTATTTGAAGGAAGATGGTGATGATGCTTCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTACCAAATCTTTGGGGTTGCTTTTTCCACTAAAGGTTGGTTACATTTCTTTCTGTTATTTGTACCAGTAACTGCTTTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGTCTATGACTTCGGTTCTCAGGAAATCCGTGCAGTAGGGGAAGATCCTGAATTTGAGACTTTATATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

mRNA sequence

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTAGTAACTGCTTTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGTCTATGACTTCGGTTCTCAGGAAATCCGTGCAGTAGGGGAAGATCCTGAATTTGAGACTTTATATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

Coding sequence (CDS)

ATGACTATAGCCGTTGGTAAATTGACCAAAGACTCAAATGATTTCTTCTTCGAGATTATGGATGACTCGTTACGGAGGGACCGGTTCGGTCTTGTAGTAACTGCTTTATGGCTGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGTCTATGACTTCGGTTCTCAGGAAATCCGTGCAGTAGGGGAAGATCCTGAATTTGAGACTTTATATACCCTACTATACCCAGAATCTTCTCTTAACCGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA

Protein sequence

MTIAVGKLTKDSNDFFFEIMDDSLRRDRFGLVVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGGSRSAS

Homology

[Close]

BLAST of CmaCh04G019670 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT 317

[Close]

BLAST of CmaCh04G019670 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT 317

[Close]

BLAST of CmaCh04G019670 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT 317

[Close]

BLAST of CmaCh04G019670 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT 317

[Close]

BLAST of CmaCh04G019670 vs. ExPASy Swiss-Prot
Match: Q70Y08 (Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT 317

[Close]

BLAST of CmaCh04G019670 vs. ExPASy TrEMBL
Match: A0A649X4Q6 (Photosystem II D2 protein OS=Erythrostemon gilliesii OX=191891 GN=psbD PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.9e-16
Identity = 51/65 (78.46%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGG 92
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT    + SL RRYSCLDGG
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT--XXKYSLKRRYSCLDGG 336

Query: 93  SRSAS 98
           SRSAS
Sbjct: 337 SRSAS 338

[Close]

BLAST of CmaCh04G019670 vs. ExPASy TrEMBL
Match: A0A3P6DWI1 (Photosystem II D2 protein OS=Brassica campestris OX=3711 GN=BRASC143T45684Z PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.1e-15
Identity = 50/65 (76.92%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGG 92
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT  Y   S  RRYS LDGG
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYTKKY---SFKRRYSRLDGG 336

Query: 93  SRSAS 98
           SRSAS
Sbjct: 337 SRSAS 337

[Close]

BLAST of CmaCh04G019670 vs. ExPASy TrEMBL
Match: A0A2J6MBJ7 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X102120 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 32 VVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
          VVT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFETLYT
Sbjct: 41 VVTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETLYT 82

[Close]

BLAST of CmaCh04G019670 vs. ExPASy TrEMBL
Match: A0A1J7IM84 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_24366 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 47/85 (55.29%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1  MTIAVGKLTKDSNDFFFEIMDDSLRRDR------FGLVV-----TALWLSALGVVGLALN 60
          MTIA+ K TK+ ND  F+IMDD L+ D       FGL++      ALW     VVGLALN
Sbjct: 1  MTIALSKFTKNEND-LFDIMDDWLQMDHFVFVGWFGLLLFPCTYFALW-DWFTVVGLALN 60

Query: 61 LRVYDFGSQEIRAVGEDPEFETLYT 75
          LR YDF SQ+IR   EDPEFET YT
Sbjct: 61 LRAYDFVSQKIR-TAEDPEFETFYT 82

[Close]

BLAST of CmaCh04G019670 vs. ExPASy TrEMBL
Match: A0A4Y7L596 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_042176 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLY 78
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT ++
Sbjct: 187 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYTKIF 230

[Close]

BLAST of CmaCh04G019670 vs. NCBI nr
Match: YP_009715474.1 (photosystem II protein D2 [Erythrostemon gilliesii] >QGL08586.1 photosystem II protein D2 [Erythrostemon gilliesii])

HSP 1 Score: 94.4 bits (233), Expect = 5.9e-16
Identity = 51/65 (78.46%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGG 92
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT    + SL RRYSCLDGG
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT--XXKYSLKRRYSCLDGG 336

Query: 93  SRSAS 98
           SRSAS
Sbjct: 337 SRSAS 338

[Close]

BLAST of CmaCh04G019670 vs. NCBI nr
Match: VDD26425.1 (unnamed protein product [Brassica rapa])

HSP 1 Score: 90.5 bits (223), Expect = 8.6e-15
Identity = 50/65 (76.92%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYTLLYPESSLNRRYSCLDGG 92
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT  Y   S  RRYS LDGG
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYTKKY---SFKRRYSRLDGG 336

Query: 93  SRSAS 98
           SRSAS
Sbjct: 337 SRSAS 337

[Close]

BLAST of CmaCh04G019670 vs. NCBI nr
Match: KAG5609319.1 (hypothetical protein H5410_020600 [Solanum commersonii])

HSP 1 Score: 77.4 bits (189), Expect = 7.5e-11
Identity = 41/55 (74.55%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 20 MDDSLRRDRFGLVVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
          MDD LRRDRF  VVT LW+S LGVVGLALNL  YDF  Q IRAV E+PEFET YT
Sbjct: 1  MDDCLRRDRFIFVVTDLWMSDLGVVGLALNLSAYDFVFQGIRAV-ENPEFETFYT 54

[Close]

BLAST of CmaCh04G019670 vs. NCBI nr
Match: PLY96960.1 (hypothetical protein LSAT_4X102120 [Lactuca sativa])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 32 VVTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
          VVT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFETLYT
Sbjct: 41 VVTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETLYT 82

[Close]

BLAST of CmaCh04G019670 vs. NCBI nr
Match: OIW15381.1 (hypothetical protein TanjilG_24366 [Lupinus angustifolius])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 47/85 (55.29%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 1  MTIAVGKLTKDSNDFFFEIMDDSLRRDR------FGLVV-----TALWLSALGVVGLALN 60
          MTIA+ K TK+ ND  F+IMDD L+ D       FGL++      ALW     VVGLALN
Sbjct: 1  MTIALSKFTKNEND-LFDIMDDWLQMDHFVFVGWFGLLLFPCTYFALW-DWFTVVGLALN 60

Query: 61 LRVYDFGSQEIRAVGEDPEFETLYT 75
          LR YDF SQ+IR   EDPEFET YT
Sbjct: 61 LRAYDFVSQKIR-TAEDPEFETFYT 82

[Close]

BLAST of CmaCh04G019670 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-12
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 33  VTALWLSALGVVGLALNLRVYDFGSQEIRAVGEDPEFETLYT 75
           VT LW+SALGVVGLALNLR YDF SQEIRA  EDPEFET YT
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRA-AEDPEFETFYT 317

The following BLAST results are available for this feature:

BLAST of CmaCh04G019670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4FFP4	2.1e-11	83.33	Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1	[more]
Q3V539	2.1e-11	83.33	Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1	[more]
A4QJB0	2.1e-11	83.33	Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1	[more]
A4QJJ4	2.1e-11	83.33	Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1	[more]
Q70Y08	2.1e-11	83.33	Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1	[more]

BLAST of CmaCh04G019670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A649X4Q6	2.9e-16	78.46	Photosystem II D2 protein OS=Erythrostemon gilliesii OX=191891 GN=psbD PE=3 SV=1	[more]
A0A3P6DWI1	4.1e-15	76.92	Photosystem II D2 protein OS=Brassica campestris OX=3711 GN=BRASC143T45684Z PE=3...	[more]
A0A2J6MBJ7	9.0e-10	86.05	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_4X102120 PE=3 SV=1	[more]
A0A1J7IM84	1.2e-09	55.29	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_24366 PE=4 S...	[more]
A0A4Y7L596	2.6e-09	77.78	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_042176 PE=3 SV=1	[more]

BLAST of CmaCh04G019670 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009715474.1	5.9e-16	78.46	photosystem II protein D2 [Erythrostemon gilliesii] >QGL08586.1 photosystem II p...	[more]
VDD26425.1	8.6e-15	76.92	unnamed protein product [Brassica rapa]	[more]
KAG5609319.1	7.5e-11	74.55	hypothetical protein H5410_020600 [Solanum commersonii]	[more]
PLY96960.1	1.8e-09	86.05	hypothetical protein LSAT_4X102120 [Lactuca sativa]	[more]
OIW15381.1	2.4e-09	55.29	hypothetical protein TanjilG_24366 [Lupinus angustifolius]	[more]

BLAST of CmaCh04G019670 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	1.5e-12	83.33	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 15..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019670.1	CmaCh04G019670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0010242	oxygen evolving activity