CmaCh04G019610 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G019610
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein Ycf2
Location	Cma_Chr04: 10982879 .. 10983938 (-)
RNA-Seq Expression	CmaCh04G019610
Synteny	CmaCh04G019610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGAGTGAGAAAAGGTCAAATCTTTATTGAGTTGCGAAAAGGATAGGTATCCCCATCTTCACTTCATTCTTTCTGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGGTCAAATCAATACGTTCGAAGAAGAAAGATTTGAATATCAATCTCACTCATAAGTATCATACCAAATCCCATCAATAGAATAGCTTTTTCGAGAAATACGAGACATCTAAGTCATACAAGTAAAGAGATATATTATTCATTGATAAGACAAAATGTGAACGGTTATTGGATTGATGAGAAAGAAAGAGAATTCTTGGTTCACCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGATTCTGACTCATAGTGAGAATTTCTCAAAGAATGATTCTGGCTGGTTATCAAATGATTGAACAACCGGGAGTAATTGACTTAGGAGACTTAGTGGACATTCATCTTTAGCAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGTATTTTAGTGATAGGTTCTATAGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGGTATTTCTGAACAAGTTCCTAGATAACAAGCCTAAGAGTTTGATTATTGATTGATGATAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA

mRNA sequence

ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGATTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA

Coding sequence (CDS)

ATGAGTCACCATCGATATCGACACATCTGCGATCGCCAAATGTTCGAGAGTTCCTTTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTCTCTTTGTTTCTCGAGCCTATAGTGAGCTACAGACAGATTGCTCTGGAACAATTAGGAGATTCTTTAGAAGAAATAGGGTAGGGGGAGGGGGAGGGAGTTCTGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCGCTTATGAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAGCCTTATCCTCGGGGGAACTAGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGGATGATAGTGAAGATATCGACCGTGACCTTGAGGCTGGAGCTTTTAAGATGAATGCGCTATGGATATGA

Protein sequence

MSHHRYRHICDRQMFESSFIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITVADDSEDIDRDLEAGAFKMNALWI

Homology

[Close]

BLAST of CmaCh04G019610 vs. ExPASy Swiss-Prot
Match: A4GGE1 (Protein Ycf2 OS=Phaseolus vulgaris OX=3885 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 47/109 (43.12%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 89   DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLAL---SSGEL------DDPSYLV 148
            +RH  L   Q++ +   +W     +FPSHGKPFSLRLAL   S G L         SYLV
Sbjct: 1580 ERHIFLANYQTITYSQTLWGANSFHFPSHGKPFSLRLALPPPSRGILVIGSIGTGRSYLV 1639

Query: 149  KYLATNSYLPFITV-----------------------ADDSEDIDRDLE 166
            KYLA NSY+PFITV                       +DDS+DIDRDL+
Sbjct: 1640 KYLAKNSYVPFITVFLNKFLDNKPKGFLIDDSDDIDDSDDSDDIDRDLD 1688

HSP 2 Score: 52.8 bits (125), Expect = 4.7e-06
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 12   RQMFESSFIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD 52
            R +    F +SILFLLL+A YLVRTHLLFVSR YSELQT+
Sbjct: 1326 RSLNVQEFFYSILFLLLVAGYLVRTHLLFVSRVYSELQTE 1365

[Close]

BLAST of CmaCh04G019610 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.7e-11
Identity = 47/111 (42.34%), Postives = 54/111 (48.65%), Query Frame = 0


Query: 89   DRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGEL------DDPSYLVKYL 148
            +R + L   Q++ H          +FPSHGK FSLRLALS G L         SYLVKYL
Sbjct: 1291 ERRTFLAHYQTITHSQTSCGANSFHFPSHGKLFSLRLALSPGILVIGSIGTGRSYLVKYL 1350

Query: 149  ATNSYLPFITV----------------------------ADDSEDIDRDLE 166
            ATNSYLPFITV                             DDS+DIDRDL+
Sbjct: 1351 ATNSYLPFITVFLNKFRDNKPKFIDDSDDDSDDIDDSGDIDDSDDIDRDLD 1401

HSP 2 Score: 57.0 bits (136), Expect = 2.5e-07
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 19   FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD 52
            F++SILFLLL+AVYLVRTHLLFVSRAYSELQT+
Sbjct: 1050 FLYSILFLLLIAVYLVRTHLLFVSRAYSELQTE 1082

[Close]

BLAST of CmaCh04G019610 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.8e-10
Identity = 41/75 (54.67%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 113  NFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV----------- 166
            +FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV           
Sbjct: 1460 HFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPK 1519

HSP 2 Score: 45.8 bits (107), Expect = 5.8e-04
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 19   FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD 52
            F +SILFLL +A YLVRTHLLFV RA SELQT+
Sbjct: 1182 FFYSILFLLFVAGYLVRTHLLFVFRASSELQTE 1214

[Close]

BLAST of CmaCh04G019610 vs. ExPASy Swiss-Prot
Match: A6MMQ1 (Protein Ycf2 OS=Dioscorea elephantipes OX=145284 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.2e-10
Identity = 41/86 (47.67%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 113  NFPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV----------- 172
            +FPSHGKPFSLRLALS        G +    SYLVKYLATNSY+PFITV           
Sbjct: 1590 HFPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFPNKFLDDKPK 1649

HSP 2 Score: 44.7 bits (104), Expect = 1.3e-03
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 19   FIHSILFLLLLAVYLVRTHLLFVSRAYSELQT 51
            F++SILFLLL+A YLVR HLLFV RA SELQT
Sbjct: 1317 FLYSILFLLLVAGYLVRIHLLFVFRASSELQT 1348

[Close]

BLAST of CmaCh04G019610 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 40/86 (46.51%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 113  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV----------- 166
            +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV           
Sbjct: 1611 HFPSHGKPFSLRLALSPSRAILVIGSIGSGRSYLVKYLATNSYVPFITVFLNKFLDNKPK 1670

HSP 2 Score: 47.0 bits (110), Expect = 2.6e-04
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 19   FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTD 52
            F++S LFLLL+A YLVRTHLLFVSR  SELQT+
Sbjct: 1341 FLYSTLFLLLVAGYLVRTHLLFVSRVSSELQTE 1373

[Close]

BLAST of CmaCh04G019610 vs. ExPASy TrEMBL
Match: B9SHW9 (AAA domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0568360 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.6e-19
Identity = 88/216 (40.74%), Postives = 107/216 (49.54%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGT 78
           F++SILFLLL+A YLVRTHLLFVSRAYSELQT+                        +  
Sbjct: 23  FLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSE 82

Query: 79  IRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPAYE----KDRHSLLIIRQSLI 138
           +  F+ +N       ++G        SASGGN LWGGGPAY     +     L I    +
Sbjct: 83  LNSFWLKNLFLVSLEQLGDFLEEMRGSASGGNKLWGGGPAYGVKSIRSEKKFLNINLIDL 142

Query: 139 HKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GEL-DDPSYLV 162
            K R++L              +   +FPSHGKPFSL LALS        G +    SYLV
Sbjct: 143 IKIRIFLTYYQTTTYSQTSCGVNSFHFPSHGKPFSLCLALSPSRGILVIGSIGTGRSYLV 202

[Close]

BLAST of CmaCh04G019610 vs. ExPASy TrEMBL
Match: B9S1C2 (ATPase_AAA_core domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1655770 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-16
Identity = 83/206 (40.29%), Postives = 100/206 (48.54%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGT-----------IRRFFRRNRVGG 78
           F +SILFLLL+A YLVRTHLLFVSRAYSELQT+               +R+   R     
Sbjct: 23  FFYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDR----- 82

Query: 79  GGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSL---IHKPRVWLIVC-----------LN 138
                 S  N  W         ++  L+  + L   + + RV L+              +
Sbjct: 83  ---YPTSELNSFW--------LKNLFLVSLEQLGDFLEEMRVLLLAATCYKVVVRLMGFH 142

Query: 139 FPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV------------ 175
           FPSHGKPFSLRLALS        G +    SYLVKYLATN YLPFITV            
Sbjct: 143 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNFYLPFITVFLNKFLDNKPKG 202

[Close]

BLAST of CmaCh04G019610 vs. ExPASy TrEMBL
Match: A0A4Y7ICI4 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_038438 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.4e-13
Identity = 80/211 (37.91%), Postives = 96/211 (45.50%), Query Frame = 0


Query: 24  LFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFF 83
           LFLLL+A YLVRTHLLFVSRA SELQT+                        +  +  F+
Sbjct: 17  LFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFW 76

Query: 84  RRN-------RVGGG---GGSSASGGNMLWGGGPAY--------EKDRHSLLIIRQSLIH 143
            +N       ++G        SASGGNML GGGP Y        +K  +  LI   S+I 
Sbjct: 77  LKNLFLVALEQLGNSLEEIRGSASGGNMLLGGGPTYGVKSIRSKKKYLNINLIDIISIIP 136

Query: 144 KP------------------RVWL--------------IVCLNFPSHGKPFSLRLALSSG 154
            P                  R++L              +   +FPSHGKPFSLRLALS  
Sbjct: 137 NPINRITFSRNTRYPSRTKRRIFLAHYQTITYSQTSCGVNSFHFPSHGKPFSLRLALSPS 196

[Close]

BLAST of CmaCh04G019610 vs. ExPASy TrEMBL
Match: A0A0D2Q7J9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G166000 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.4e-13
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNM 78
           F++SILFLLL+A YLVRTHLLFVSRAYSELQ +                           
Sbjct: 602 FLYSILFLLLVAGYLVRTHLLFVSRAYSELQIEFEKVKSLMI------------------ 661

Query: 79  LWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGELDDPSYL 138
                P+Y  + H  L   Q++ +          +FPS GKPFSLRLALS      PS  
Sbjct: 662 -----PSYMIELHIFLAHYQTITYSQTSCGANSFHFPSRGKPFSLRLALS------PSRG 707

Query: 139 VKYLATNSYLPFITV 154
           +  +ATNSY+PFITV
Sbjct: 722 ILVIATNSYVPFITV 707

[Close]

BLAST of CmaCh04G019610 vs. ExPASy TrEMBL
Match: A0A3S3NFH8 (ATPase_AAA_core domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02781900 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.4e-13
Identity = 74/195 (37.95%), Postives = 95/195 (48.72%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRA--------YSELQTD--CSGTIRRFFRRNRVGGG 78
           F++SILFLLL+A YLVRTHLLFV RA        +S L T+      +      +R+   
Sbjct: 503 FLYSILFLLLVAGYLVRTHLLFVFRASKREFLVQFSTLTTEKRIDQILLSLTHSDRL--- 562

Query: 79  GGSSASGGNMLWGGGPAYEK---DRHSLLII----RQSLIHKPRVWL------------- 138
              + SG  M+   G  Y +   D H   ++     +S + + R++L             
Sbjct: 563 -SKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNRSCLAERRIFLAHYQTITYSQTSC 622

Query: 139 -IVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV-------------- 164
                +FPSHGKPFSLRLALS       SYLVKYLATNSY+PFITV              
Sbjct: 623 GANSSHFPSHGKPFSLRLALSPSRGTGRSYLVKYLATNSYVPFITVFPNKFLDDKPKGYL 682

[Close]

BLAST of CmaCh04G019610 vs. NCBI nr
Match: EEF36790.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-18
Identity = 88/216 (40.74%), Postives = 107/216 (49.54%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGT 78
           F++SILFLLL+A YLVRTHLLFVSRAYSELQT+                        +  
Sbjct: 23  FLYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDRYPTSE 82

Query: 79  IRRFFRRN-------RVGG---GGGSSASGGNMLWGGGPAYE----KDRHSLLIIRQSLI 138
           +  F+ +N       ++G        SASGGN LWGGGPAY     +     L I    +
Sbjct: 83  LNSFWLKNLFLVSLEQLGDFLEEMRGSASGGNKLWGGGPAYGVKSIRSEKKFLNINLIDL 142

Query: 139 HKPRVWL--------------IVCLNFPSHGKPFSLRLALSS-------GEL-DDPSYLV 162
            K R++L              +   +FPSHGKPFSL LALS        G +    SYLV
Sbjct: 143 IKIRIFLTYYQTTTYSQTSCGVNSFHFPSHGKPFSLCLALSPSRGILVIGSIGTGRSYLV 202

[Close]

BLAST of CmaCh04G019610 vs. NCBI nr
Match: EEF42587.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 96.3 bits (238), Expect = 2.8e-16
Identity = 83/206 (40.29%), Postives = 100/206 (48.54%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGT-----------IRRFFRRNRVGG 78
           F +SILFLLL+A YLVRTHLLFVSRAYSELQT+               +R+   R     
Sbjct: 23  FFYSILFLLLVAGYLVRTHLLFVSRAYSELQTEFEKVKSLMIPSYMIELRKLLDR----- 82

Query: 79  GGGSSASGGNMLWGGGPAYEKDRHSLLIIRQSL---IHKPRVWLIVC-----------LN 138
                 S  N  W         ++  L+  + L   + + RV L+              +
Sbjct: 83  ---YPTSELNSFW--------LKNLFLVSLEQLGDFLEEMRVLLLAATCYKVVVRLMGFH 142

Query: 139 FPSHGKPFSLRLALSS-------GEL-DDPSYLVKYLATNSYLPFITV------------ 175
           FPSHGKPFSLRLALS        G +    SYLVKYLATN YLPFITV            
Sbjct: 143 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNFYLPFITVFLNKFLDNKPKG 202

[Close]

BLAST of CmaCh04G019610 vs. NCBI nr
Match: KJB15229.1 (hypothetical protein B456_002G166000 [Gossypium raimondii])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 58/135 (42.96%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRAYSELQTDCSGTIRRFFRRNRVGGGGGSSASGGNM 78
           F++SILFLLL+A YLVRTHLLFVSRAYSELQ +                           
Sbjct: 602 FLYSILFLLLVAGYLVRTHLLFVSRAYSELQIEFEKVKSLMI------------------ 661

Query: 79  LWGGGPAYEKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLALSSGELDDPSYL 138
                P+Y  + H  L   Q++ +          +FPS GKPFSLRLALS      PS  
Sbjct: 662 -----PSYMIELHIFLAHYQTITYSQTSCGANSFHFPSRGKPFSLRLALS------PSRG 707

Query: 139 VKYLATNSYLPFITV 154
           +  +ATNSY+PFITV
Sbjct: 722 ILVIATNSYVPFITV 707

[Close]

BLAST of CmaCh04G019610 vs. NCBI nr
Match: RWR98289.1 (hypothetical protein CKAN_02781900 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 74/195 (37.95%), Postives = 95/195 (48.72%), Query Frame = 0


Query: 19  FIHSILFLLLLAVYLVRTHLLFVSRA--------YSELQTD--CSGTIRRFFRRNRVGGG 78
           F++SILFLLL+A YLVRTHLLFV RA        +S L T+      +      +R+   
Sbjct: 503 FLYSILFLLLVAGYLVRTHLLFVFRASKREFLVQFSTLTTEKRIDQILLSLTHSDRL--- 562

Query: 79  GGSSASGGNMLWGGGPAYEK---DRHSLLII----RQSLIHKPRVWL------------- 138
              + SG  M+   G  Y +   D H   ++     +S + + R++L             
Sbjct: 563 -SKNDSGYQMIEQPGSIYLRYLVDIHKKYLMNYEFNRSCLAERRIFLAHYQTITYSQTSC 622

Query: 139 -IVCLNFPSHGKPFSLRLALSSGELDDPSYLVKYLATNSYLPFITV-------------- 164
                +FPSHGKPFSLRLALS       SYLVKYLATNSY+PFITV              
Sbjct: 623 GANSSHFPSHGKPFSLRLALSPSRGTGRSYLVKYLATNSYVPFITVFPNKFLDDKPKGYL 682

[Close]

BLAST of CmaCh04G019610 vs. NCBI nr
Match: RZC45462.1 (hypothetical protein C5167_038438 [Papaver somniferum])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 80/211 (37.91%), Postives = 96/211 (45.50%), Query Frame = 0


Query: 24  LFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTIRRFF 83
           LFLLL+A YLVRTHLLFVSRA SELQT+                        +  +  F+
Sbjct: 17  LFLLLVAGYLVRTHLLFVSRASSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSELNSFW 76

Query: 84  RRN-------RVGGG---GGSSASGGNMLWGGGPAY--------EKDRHSLLIIRQSLIH 143
            +N       ++G        SASGGNML GGGP Y        +K  +  LI   S+I 
Sbjct: 77  LKNLFLVALEQLGNSLEEIRGSASGGNMLLGGGPTYGVKSIRSKKKYLNINLIDIISIIP 136

Query: 144 KP------------------RVWL--------------IVCLNFPSHGKPFSLRLALSSG 154
            P                  R++L              +   +FPSHGKPFSLRLALS  
Sbjct: 137 NPINRITFSRNTRYPSRTKRRIFLAHYQTITYSQTSCGVNSFHFPSHGKPFSLRLALSPS 196

[Close]

BLAST of CmaCh04G019610 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 113  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV 154
            +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV
Sbjct: 1624 HFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITV 1672

HSP 2 Score: 52.8 bits (125), Expect = 3.3e-07
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 20   IHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTI 79
            ++SILFLLL+A Y+VRTHLLFVSRAYSELQT+                        +  +
Sbjct: 1351 LYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEL 1410

Query: 80   RRFFRRN-------RVGGG-GGSSASGGNMLWGGGPAY 87
              F+ +N       ++G        SGGNMLWGG PAY
Sbjct: 1411 NSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAY 1448

[Close]

BLAST of CmaCh04G019610 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 113  NFPSHGKPFSLRLALSSGEL--------DDPSYLVKYLATNSYLPFITV 154
            +FPSHGKPFSLRLALS               SYLVKYLATNSY+PFITV
Sbjct: 1624 HFPSHGKPFSLRLALSPSRSILVIGSIGTGRSYLVKYLATNSYVPFITV 1672

HSP 2 Score: 52.8 bits (125), Expect = 3.3e-07
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 20   IHSILFLLLLAVYLVRTHLLFVSRAYSELQTDC-----------------------SGTI 79
            ++SILFLLL+A Y+VRTHLLFVSRAYSELQT+                        +  +
Sbjct: 1351 LYSILFLLLVAGYIVRTHLLFVSRAYSELQTEFEKIKSLMIPSYMIELRKLLDRYPTSEL 1410

Query: 80   RRFFRRN-------RVGGG-GGSSASGGNMLWGGGPAY 87
              F+ +N       ++G        SGGNMLWGG PAY
Sbjct: 1411 NSFWLKNLFLVALEQLGDCLEEIRGSGGNMLWGGDPAY 1448

The following BLAST results are available for this feature:

BLAST of CmaCh04G019610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GGE1	3.4e-12	43.12	Protein Ycf2 OS=Phaseolus vulgaris OX=3885 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	3.7e-11	42.34	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
P08973	1.8e-10	54.67	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]
A6MMQ1	9.2e-10	47.67	Protein Ycf2 OS=Dioscorea elephantipes OX=145284 GN=ycf2-A PE=3 SV=1	[more]
A0A379	1.6e-09	46.51	Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh04G019610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B9SHW9	8.6e-19	40.74	AAA domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0568360 PE=3 S...	[more]
B9S1C2	1.4e-16	40.29	ATPase_AAA_core domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_16...	[more]
A0A4Y7ICI4	5.4e-13	37.91	Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_038438 PE=4 SV=1	[more]
A0A0D2Q7J9	5.4e-13	42.96	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G166000 PE=3 ...	[more]
A0A3S3NFH8	5.4e-13	37.95	ATPase_AAA_core domain-containing protein OS=Cinnamomum micranthum f. kanehirae ...	[more]

BLAST of CmaCh04G019610 vs. NCBI nr


Match Name	E-value	Identity	Description
EEF36790.1	1.8e-18	40.74	conserved hypothetical protein [Ricinus communis]	[more]
EEF42587.1	2.8e-16	40.29	conserved hypothetical protein [Ricinus communis]	[more]
KJB15229.1	1.1e-12	42.96	hypothetical protein B456_002G166000 [Gossypium raimondii]	[more]
RWR98289.1	1.1e-12	37.95	hypothetical protein CKAN_02781900 [Cinnamomum micranthum f. kanehirae]	[more]
RZC45462.1	1.1e-12	37.91	hypothetical protein C5167_038438 [Papaver somniferum]	[more]

BLAST of CmaCh04G019610 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-09	65.31	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-09	65.31	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 16..52 e-value: 1.2E-10 score: 39.4
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 112..154
None	No IPR available	PANTHER	PTHR33078:SF50	YCF2-LIKE PROTEIN	coord: 112..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019610.1	CmaCh04G019610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular anatomical structure