CmaCh04G019340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G019340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein CROWDED NUCLEI 2-like
Location	Cma_Chr04: 10523042 .. 10526257 (+)
RNA-Seq Expression	CmaCh04G019340
Synteny	CmaCh04G019340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTAAGTCAATTTTCTATTATGGTTTTATTCTTATTTTTTACTAATTATGTCAAATCTTTATTTTGTGAACTCACATAATTTTGATTTGGGTCGAAGATATGTGATGTATTTTCCAATTTTGATTTGGCATCTCCCTTCGACCCGTCTCAGTTTCAATCTGTTTTTCGATAGCGACAAATTTGACTTCCTCATTTATCACAAATGCAATTCTCGTACTCAGATTTGAGGGCGGGAGTTGTTGGGTTGAGAGTTTTTTTATGCAACCAAAAGATCAGGTTGGTTAGATTGGTAATTCAACCCGAAAATTTTCCTAACCCAATCCTCTATTTTCGAGTTTACCAAACCCATAGATACCTCTTGCGTATAATTACTATTATTTTTATTTAATTCGGGTTCACCCCGAGTTTTTACCTGAAACTGAACCGATTCCTGATTGTTTAGTTATTTATTCCCGACTGGATTGAACAGACCGGTGGAAGTACGGTTTCTGTAGAACTTGGGGGAGCATCTCAATTCTCGTGTTTGTTTTCACTTCATTACAGACGGCCCACCGCCGCCTTTGGGGTCTCTGAGCGACCGATTCCATAAAATAGCAGCGGCTGCGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCTGCAATGGAGCGCAAGGATTGGGAGGCGCTTCTTGAGAAGGCTTCAAGGCTTCAGAGCGAGGTTAGCAATTATCATAAATTCTTACTTGTTTTCTATCTTTGGATTAATTGGGGTTGAACTGTAACGTTATGGCATATGCATTTATGTGATACACTGGACTACAAGTTTGGGCCCTGGTAAAAGCTAGTTTCTATTGTTACTTAGGTTGGTTCACGTTTAGCAAATAAGAGAAGAAATCAAGCCTAGCACAAATTTAACCCTGGTTAATGCACAATATCAAGAAAAACCATTGAATATGCCTTTCAAAACTCACAAATTCATGTTGCAACAGTCAATTAATGCCAAACTCATCCACTAATTTTAATGAATAGTATGGTAAAAATCTCTCCAAATTTAATAATTCAACAAAAATCAAGCCTAGCATAAATTTAAGCCCGCTAATGCACAAGATCGATAAAAACTCACAACTTCAACAAACACAGCTCTAGTATTGTTTTTCTTTGAAGGGCTTCATTAATTTTATAGTAGACTTACGTTTTATATTTATTAAATGTACATAAGAATATTTTCATTGAAAATTTTTAAATTCTATCATAGGGAAAGACTTTCAATGCTTATTTAAGGTTAAGATAGCGATGTTTATCAAAAGTTTGAGGTGCATTTTGATGAAATTAAAAGTTCAGGGTATAAATTGTTTGTTTCCCCTAAAATTTTAAAATAGTTTTGGCAAATTTAGGCAATCATGGGGTGAAATATTGAATTCCAATGTATAGAAAAATAGGTGCTCTTGTGATTTTTTTGAGCAATTATACTTATGTTGGTAGGTTTAATCAGGTTGGAACCTCATGCCTAGGAAGCTGAAATACTGTTTCCATTTAGATGAAGAGAGAAAAAATGTTTTTTTTGCCTTTTTTTTTTGTCTTTTTAATGTAATAGATGTATGCATTATAATGTTGTAGTGTTTAGCACAATCATCCTACAAGATGGGAATAAATGACTTCATTGTTTGTCATTCTTTTGGTATCGTTCCTGTCATCAGAACTTATATTGCTCTTACATGGATTTATCTGATTATTATTTTTGGCAGCTTTTTGATTACCAGCACAATATGGGACTTATTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGACCAACTAGAACAAGGTTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTTCATTGCATTATCTGAAGTTGAAACGAGGAGGGATACTTTGAAGAAAGCTCTAGCTGCTGAGAAGCAACATGTGTCTAGTGTATGCTACTCTTGGCACATCCATTCCCCATTAACGTATTTCTTATTTGATAATGTTGCCATTTTCCTTTCTTTTTTGTATTCTTAGATACTCAATTTGTTAGGCCACCAATCGTAAATGTGTACTAGAGAAACATGTAAGTGGTGGGGGGAGTTAACTTTCGTCAGCCCTACTGGTAATTGGGTGAGGTGACATAGGAGAAGTTGTAACAGAGAGAGTAATATGAGGGTAGTATCTATTCTTAAGGAGTATGTATTTGTTTAGAAGAGTCTTGTAGTATGGGAGAGAGAGGATCTTATTTTGAAATTTGGACACTAAATTGTGAAGTTATGTCTATAGAAATAGATCTTAGATCTTAAAGATTGATTAAATACTTAAAGATATCTCGCTTTGAAGTTTTTTAGGGCTATGTGATAGGTCATTGTTCTATTTTGTAGGGAGGGCAATATATATTCACAATATCTAGCCATTAGCAGCATGGATTTGTTTTCACTATTTTGCCAAGATAATATAAGGATGTTTATTAGCAGCTGGCCCCATTCTTTATTTATTATCTTTTCATACCTATTCTTGGTGCAGCTTAAAAAGGCTTTATGTGAAGCAAAGGAGGAGTGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGCGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCTGAAGCGAAGCTTGCTGAGGTAAATAGGAAGAGTTCAGAGTTGGAAATGAGGATGCATAAAGTCGAAAGCAGACCGAGCAAATATCCTTCGTCATAAGGTATTCTTCTCAATATCCTTTTCTTTGAGCATATGACCCATCAATCTTTGATATGTACGGATTTGGGAGAAATGCTTCTGTTTGAATAATCTTCCTGATTTCAAGTAGAAAAGTGGTAGGCTAAATTTAGGCAGAAGAGACCTGACCCTTATCCAATTTGAGGGGTCAATATTGGTGAAGTGACCTTGGAAGTTTTCCCTGGTAGCAGACTAGAAGTTTATGATGGCTGTTTCTTGAAATTTTATTACTTGTAGCATGTTTCATGGTATCCTGAAGTTTGTTGATGTGATATTGATAAATTGATGCTTATCCTCGCGTTATTTTCTCTCTTGATTCTCATGTATCTTTCTTTGTTTAATAGATTATTTCCTGTTCAAATTTTTATTCAAGGTTGATCATTGATGTTTCAGTGTCACGCTACTAAAGTGTAA

mRNA sequence

ATGAAAAACGGCCCACCGCCGCCTTTGGGGTCTCTGAGCGACCGATTCCATAAAATAGCAGCGGCTGCGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCTGCAATGGAGCGCAAGGATTGGGAGGCGCTTCTTGAGAAGGCTTCAAGGCTTCAGAGCGAGCTTTTTGATTACCAGCACAATATGGGACTTATTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGACCAACTAGAACAAGGTTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTTCATTGCATTATCTGAAGTTGAAACGAGGAGGGATACTTTGAAGAAAGCTCTAGCTGCTGAGAAGCAACATGTGTCTAGTCTTAAAAAGGCTTTATGTGAAGCAAAGGAGGAGTGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGCGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCTGAAGCGAAGCTTGCTGAGTGTCACGCTACTAAAGTGTAA

Coding sequence (CDS)

ATGAAAAACGGCCCACCGCCGCCTTTGGGGTCTCTGAGCGACCGATTCCATAAAATAGCAGCGGCTGCGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGACGCGGCTGCAATGGAGCGCAAGGATTGGGAGGCGCTTCTTGAGAAGGCTTCAAGGCTTCAGAGCGAGCTTTTTGATTACCAGCACAATATGGGACTTATTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGACCAACTAGAACAAGGTTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTTCATTGCATTATCTGAAGTTGAAACGAGGAGGGATACTTTGAAGAAAGCTCTAGCTGCTGAGAAGCAACATGTGTCTAGTCTTAAAAAGGCTTTATGTGAAGCAAAGGAGGAGTGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGCGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCTGAAGCGAAGCTTGCTGAGTGTCACGCTACTAAAGTGTAA

Protein sequence

MKNGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAECHATKV

Homology

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BLAST of CmaCh04G019340 vs. ExPASy Swiss-Prot
Match: Q9SAF6 (Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana OX=3702 GN=CRWN2 PE=1 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 92/182 (50.55%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 5   PPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSEL 64
           PPPP+G+L+ +        D  DM DWR+F++ GLL+ A+ME+KD EALLEK S L+ EL
Sbjct: 38  PPPPIGTLTGQ-GVSRGHTDDMDMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKEL 97

Query: 65  FDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKAL 124
           + YQHNMGL+L+E +   SK +QL Q   E  EI KRE+S+H  AL+ VE R + L+KAL
Sbjct: 98  YGYQHNMGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKAL 157

Query: 125 AAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKL 184
             EKQ V  L+KAL E +EE ++I L+S+ KL +ANAL+  +  +S ++E K+Y+AE+KL
Sbjct: 158 GLEKQCVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKL 217

Query: 185 AE 187
           AE
Sbjct: 218 AE 218

[Close]

BLAST of CmaCh04G019340 vs. ExPASy Swiss-Prot
Match: I0J0E7 (Nuclear matrix constituent protein 1 OS=Allium cepa OX=4679 GN=NMCP1 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-33
Identity = 85/184 (46.20%), Postives = 123/184 (66.85%), Query Frame = 0


Query: 5   PPPPLGSLSDRFHKIAAAADTG--DMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQS 64
           P PPLG L+          D G  DM+ W++FK  GLLD +   +KD E+L  +   L+ 
Sbjct: 37  PFPPLGLLN------GGDLDRGGEDMEAWKRFKDEGLLDESICYKKDRESLASRIIELEK 96

Query: 65  ELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKK 124
           +L +YQ+NMGL+L+EK+  +S  ++++  LAE  EI KRE++AH IAL+E E R D L+K
Sbjct: 97  DLHEYQYNMGLLLIEKKEWSSHFEEMKMRLAEAEEILKREQAAHIIALTESEKREDNLRK 156

Query: 125 ALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEA 184
           AL  EKQ V+ L+KAL E + E AE++ T++KK+ +A AL   I EK L+ E+KL++A+A
Sbjct: 157 ALGVEKQCVTDLEKALREMRSEIAEVKYTAEKKMTEAFALEASIEEKRLDTERKLHSADA 214

Query: 185 KLAE 187
           KLAE
Sbjct: 217 KLAE 214

[Close]

BLAST of CmaCh04G019340 vs. ExPASy Swiss-Prot
Match: Q9CA42 (Protein CROWDED NUCLEI 3 OS=Arabidopsis thaliana OX=3702 GN=CRWN3 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-30
Identity = 72/157 (45.86%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 29  DDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQL 88
           DDW+KFK+ GLLD A++ERKD +AL+EK  +L+ ELFDYQHNMGL+L+EK+   S  ++L
Sbjct: 39  DDWQKFKEVGLLDEASLERKDRDALIEKILKLEKELFDYQHNMGLLLIEKKQWTSTNNEL 98

Query: 89  EQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEI 148
           +Q   E +E+ KRE++++ I L+E + R + L+KAL  EKQ V+ L+  L   + E + +
Sbjct: 99  QQAYDEAMEMLKREKTSNAITLNEADKREENLRKALIDEKQFVAELENDLKYWQREHSVV 158

Query: 149 ELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLA 186
           + TS+ KL +ANAL+  + EK+LE++++   AE K +
Sbjct: 159 KSTSEAKLEEANALVIGMKEKALEVDRERAIAEEKFS 195

[Close]

BLAST of CmaCh04G019340 vs. ExPASy Swiss-Prot
Match: A0A166B1A6 (Nuclear matrix constituent protein 1 OS=Daucus carota subsp. sativus OX=79200 GN=NMCP1 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-27
Identity = 71/142 (50.00%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 45  MERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERS 104
           M R +   L  K  +L++ELFDYQ+NMGL+L+EK+   SK ++L+Q   ET +  K+E+ 
Sbjct: 1   MGRVEDMGLNAKLMKLETELFDYQYNMGLLLIEKKEWTSKFEELQQVYTETKDALKQEQE 60

Query: 105 AHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIY 164
           AH IA+S+ E R + L KAL  EKQ V  L+KAL + + + AEI+ TS  KLA+A+ALI 
Sbjct: 61  AHLIAISDAEKREENLTKALGVEKQCVLDLEKALRDMRSDYAEIKFTSDSKLAEASALIT 120

Query: 165 EIAEKSLELEKKLYAAEAKLAE 187
           ++ EKSLE+E KL++A+AKLAE
Sbjct: 121 KVEEKSLEVESKLHSADAKLAE 142

[Close]

BLAST of CmaCh04G019340 vs. ExPASy Swiss-Prot
Match: F4HRT5 (Protein CROWDED NUCLEI 1 OS=Arabidopsis thaliana OX=3702 GN=CRWN1 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-27
Identity = 70/138 (50.72%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 49  DWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFI 108
           D   L EK S L+ ELF+YQH+MGL+L+EK+  +S+ + L+Q   E  E  K+ER+AH I
Sbjct: 48  DPRILPEKISELEKELFEYQHSMGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLI 107

Query: 109 ALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAE 168
           A+++VE R + L+KAL  EKQ    L+KAL E + E AEI+ T+  KL +ANAL+  + E
Sbjct: 108 AIADVEKREEGLRKALGIEKQCALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEE 167

Query: 169 KSLELEKKLYAAEAKLAE 187
           KSLE+E KL A +AKLAE
Sbjct: 168 KSLEVEAKLRAVDAKLAE 185

[Close]

BLAST of CmaCh04G019340 vs. ExPASy TrEMBL
Match: A0A6J1K308 (protein CROWDED NUCLEI 2-like OS=Cucurbita maxima OX=3661 GN=LOC111490200 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.4e-77
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 28  MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ 87
           MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ
Sbjct: 1   MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ 60

Query: 88  LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE 147
           LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE
Sbjct: 61  LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE 120

Query: 148 IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE 187
           IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE
Sbjct: 121 IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE 159

[Close]

BLAST of CmaCh04G019340 vs. ExPASy TrEMBL
Match: A0A6J1K004 (protein CROWDED NUCLEI 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489810 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.3e-76
Identity = 160/184 (86.96%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 3   NGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQS 62
           +GPPPPLGSL+DRFHKIAAAADTG+MDDWRKFKKAGLLDAAAMERKD EALLEKASRLQS
Sbjct: 13  DGPPPPLGSLNDRFHKIAAAADTGNMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQS 72

Query: 63  ELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKK 122
           ELFDYQHN+GLILLEK+  ASK DQL Q LAET EIFKRE+SAH IALSEVETRRD LKK
Sbjct: 73  ELFDYQHNLGLILLEKKVWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKK 132

Query: 123 ALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEA 182
           ALAAEKQHVSSLKKALCE KEE AEI+LTSQKKLADANAL++ I EKSLEL+KKL AAEA
Sbjct: 133 ALAAEKQHVSSLKKALCEVKEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEA 192

Query: 183 KLAE 187
           KLAE
Sbjct: 193 KLAE 196

[Close]

BLAST of CmaCh04G019340 vs. ExPASy TrEMBL
Match: A0A6J1EPS4 (protein CROWDED NUCLEI 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111436467 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 159/184 (86.41%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 3   NGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQS 62
           +GPPPPLGSL+DRFHKIAAAADTG+MDDWRKFKKAGLLDAAAMERKD EALLEKASRLQS
Sbjct: 13  DGPPPPLGSLNDRFHKIAAAADTGNMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQS 72

Query: 63  ELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKK 122
           ELFDYQHN+GLILLEK+  ASK DQL Q LAET EIFKRE+SAH IALSEVETRRD LKK
Sbjct: 73  ELFDYQHNLGLILLEKKMWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKK 132

Query: 123 ALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEA 182
           ALAAEKQHVSSLKKALCE KEE AEI+LTSQKKLADANAL++ I EKSL+L+KKL AAEA
Sbjct: 133 ALAAEKQHVSSLKKALCEVKEERAEIKLTSQKKLADANALMHGIEEKSLKLQKKLNAAEA 192

Query: 183 KLAE 187
           KLAE
Sbjct: 193 KLAE 196

[Close]

BLAST of CmaCh04G019340 vs. ExPASy TrEMBL
Match: A0A6J1EVX0 (protein CROWDED NUCLEI 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436469 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.1e-72
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 28  MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ 87
           MDDWRKFKKAGLLDAAAMERKDWEALL+ ASRLQSELFDYQHNMGL+LLEKEACASKCDQ
Sbjct: 1   MDDWRKFKKAGLLDAAAMERKDWEALLQNASRLQSELFDYQHNMGLVLLEKEACASKCDQ 60

Query: 88  LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE 147
           LEQ LAETVEIFKRERSAHFIALSEVETRRD LKKALAAEKQHVSSLKKALCEAKEE AE
Sbjct: 61  LEQKLAETVEIFKRERSAHFIALSEVETRRDNLKKALAAEKQHVSSLKKALCEAKEERAE 120

Query: 148 IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE 187
           IELTSQKKLADANALIYEI EKSLELEKKLYAAEAKLAE
Sbjct: 121 IELTSQKKLADANALIYEIEEKSLELEKKLYAAEAKLAE 159

[Close]

BLAST of CmaCh04G019340 vs. ExPASy TrEMBL
Match: A0A1S3CSZ3 (protein CROWDED NUCLEI 3 OS=Cucumis melo OX=3656 GN=LOC103504607 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.2e-69
Identity = 150/182 (82.42%), Postives = 161/182 (88.46%), Query Frame = 0


Query: 5   PPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSEL 64
           PPPPLGSL+D  +K A A DTGDMDDWRKFKKAGLLDAAAMERKD EALLEKASRLQSEL
Sbjct: 42  PPPPLGSLNDELYKTATAVDTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSEL 101

Query: 65  FDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKAL 124
           FDYQHNMGL+L+EK+  A K DQLEQ LAET EIFKRE+SAH IALSEVETRRD LKKAL
Sbjct: 102 FDYQHNMGLLLIEKKDWALKFDQLEQDLAETEEIFKREQSAHLIALSEVETRRDNLKKAL 161

Query: 125 AAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKL 184
           AAEKQHVSSLKK+L E  EE AEI+LTSQKKLADANAL++ I EKSLEL+KKL AAEAKL
Sbjct: 162 AAEKQHVSSLKKSLYEVNEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEAKL 221

Query: 185 AE 187
           AE
Sbjct: 222 AE 223

[Close]

BLAST of CmaCh04G019340 vs. NCBI nr
Match: KAG6601703.1 (Succinate dehydrogenase assembly factor 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 174/186 (93.55%), Postives = 178/186 (95.70%), Query Frame = 0


Query: 1   MKNGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRL 60
           M++ PPPPLGSL+DRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLE ASRL
Sbjct: 1   MEDRPPPPLGSLNDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLENASRL 60

Query: 61  QSELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTL 120
           QSELFDYQHNMGL+LLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR D L
Sbjct: 61  QSELFDYQHNMGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNL 120

Query: 121 KKALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAA 180
           KKALAAEKQHVSSLKKALCEAKEE AEIELTSQKKLADANALIYEI EKSLELEKKLYAA
Sbjct: 121 KKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKKLYAA 180

Query: 181 EAKLAE 187
           EAKLAE
Sbjct: 181 EAKLAE 186

[Close]

BLAST of CmaCh04G019340 vs. NCBI nr
Match: XP_022994499.1 (protein CROWDED NUCLEI 2-like [Cucurbita maxima] >XP_022994505.1 protein CROWDED NUCLEI 2-like [Cucurbita maxima] >XP_022994513.1 protein CROWDED NUCLEI 2-like [Cucurbita maxima])

HSP 1 Score: 297.7 bits (761), Expect = 7.0e-77
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 28  MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ 87
           MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ
Sbjct: 1   MDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQ 60

Query: 88  LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE 147
           LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE
Sbjct: 61  LEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAE 120

Query: 148 IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE 187
           IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE
Sbjct: 121 IELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAE 159

[Close]

BLAST of CmaCh04G019340 vs. NCBI nr
Match: XP_022993965.1 (protein CROWDED NUCLEI 1-like isoform X1 [Cucurbita maxima] >XP_022993975.1 protein CROWDED NUCLEI 1-like isoform X1 [Cucurbita maxima] >XP_022993983.1 protein CROWDED NUCLEI 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 160/184 (86.96%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 3   NGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQS 62
           +GPPPPLGSL+DRFHKIAAAADTG+MDDWRKFKKAGLLDAAAMERKD EALLEKASRLQS
Sbjct: 13  DGPPPPLGSLNDRFHKIAAAADTGNMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQS 72

Query: 63  ELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKK 122
           ELFDYQHN+GLILLEK+  ASK DQL Q LAET EIFKRE+SAH IALSEVETRRD LKK
Sbjct: 73  ELFDYQHNLGLILLEKKVWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKK 132

Query: 123 ALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEA 182
           ALAAEKQHVSSLKKALCE KEE AEI+LTSQKKLADANAL++ I EKSLEL+KKL AAEA
Sbjct: 133 ALAAEKQHVSSLKKALCEVKEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEA 192

Query: 183 KLAE 187
           KLAE
Sbjct: 193 KLAE 196

[Close]

BLAST of CmaCh04G019340 vs. NCBI nr
Match: KAG7032453.1 (Protein CROWDED NUCLEI 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 160/184 (86.96%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 3   NGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQS 62
           +GPPPPLGSL+DRFHKIAAAADTG+MDDWRKFKKAGLLDAAAMERKD EALLEKASRLQS
Sbjct: 13  DGPPPPLGSLNDRFHKIAAAADTGNMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQS 72

Query: 63  ELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKK 122
           ELFDYQHN+GLILLEK+  ASK DQL Q LAET EIFKRE+SAH IALSEVETRRD LKK
Sbjct: 73  ELFDYQHNLGLILLEKKMWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKK 132

Query: 123 ALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEA 182
           ALAAEKQHVSSLKKALCE KEE AEI+LTSQKKLADANAL++ I EKSLEL+KKL AAEA
Sbjct: 133 ALAAEKQHVSSLKKALCEVKEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEA 192

Query: 183 KLAE 187
           KLAE
Sbjct: 193 KLAE 196

[Close]

BLAST of CmaCh04G019340 vs. NCBI nr
Match: KAG6601702.1 (Protein CROWDED NUCLEI 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 160/184 (86.96%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 3   NGPPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQS 62
           +GPPPPLGSL+DRFHKIAAAADTG+MDDWRKFKKAGLLDAAAMERKD EALLEKASRLQS
Sbjct: 13  DGPPPPLGSLNDRFHKIAAAADTGNMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQS 72

Query: 63  ELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKK 122
           ELFDYQHN+GLILLEK+  ASK DQL Q LAET EIFKRE+SAH IALSEVETRRD LKK
Sbjct: 73  ELFDYQHNLGLILLEKKMWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKK 132

Query: 123 ALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEA 182
           ALAAEKQHVSSLKKALCE KEE AEI+LTSQKKLADANAL++ I EKSLEL+KKL AAEA
Sbjct: 133 ALAAEKQHVSSLKKALCEVKEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEA 192

Query: 183 KLAE 187
           KLAE
Sbjct: 193 KLAE 196

[Close]

BLAST of CmaCh04G019340 vs. TAIR 10
Match: AT1G13220.1 (nuclear matrix constituent protein-related )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 92/182 (50.55%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 5   PPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSEL 64
           PPPP+G+L+ +        D  DM DWR+F++ GLL+ A+ME+KD EALLEK S L+ EL
Sbjct: 51  PPPPIGTLTGQ-GVSRGHTDDMDMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKEL 110

Query: 65  FDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKAL 124
           + YQHNMGL+L+E +   SK +QL Q   E  EI KRE+S+H  AL+ VE R + L+KAL
Sbjct: 111 YGYQHNMGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKAL 170

Query: 125 AAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKL 184
             EKQ V  L+KAL E +EE ++I L+S+ KL +ANAL+  +  +S ++E K+Y+AE+KL
Sbjct: 171 GLEKQCVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKL 230

Query: 185 AE 187
           AE
Sbjct: 231 AE 231

[Close]

BLAST of CmaCh04G019340 vs. TAIR 10
Match: AT1G13220.2 (nuclear matrix constituent protein-related )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 92/182 (50.55%), Postives = 128/182 (70.33%), Query Frame = 0


Query: 5   PPPPLGSLSDRFHKIAAAADTGDMDDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSEL 64
           PPPP+G+L+ +        D  DM DWR+F++ GLL+ A+ME+KD EALLEK S L+ EL
Sbjct: 38  PPPPIGTLTGQ-GVSRGHTDDMDMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKEL 97

Query: 65  FDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFIALSEVETRRDTLKKAL 124
           + YQHNMGL+L+E +   SK +QL Q   E  EI KRE+S+H  AL+ VE R + L+KAL
Sbjct: 98  YGYQHNMGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKAL 157

Query: 125 AAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKL 184
             EKQ V  L+KAL E +EE ++I L+S+ KL +ANAL+  +  +S ++E K+Y+AE+KL
Sbjct: 158 GLEKQCVQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKL 217

Query: 185 AE 187
           AE
Sbjct: 218 AE 218

[Close]

BLAST of CmaCh04G019340 vs. TAIR 10
Match: AT1G68790.1 (little nuclei3 )

HSP 1 Score: 134.4 bits (337), Expect = 9.5e-32
Identity = 72/157 (45.86%), Postives = 112/157 (71.34%), Query Frame = 0


Query: 29  DDWRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQL 88
           DDW+KFK+ GLLD A++ERKD +AL+EK  +L+ ELFDYQHNMGL+L+EK+   S  ++L
Sbjct: 39  DDWQKFKEVGLLDEASLERKDRDALIEKILKLEKELFDYQHNMGLLLIEKKQWTSTNNEL 98

Query: 89  EQGLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEI 148
           +Q   E +E+ KRE++++ I L+E + R + L+KAL  EKQ V+ L+  L   + E + +
Sbjct: 99  QQAYDEAMEMLKREKTSNAITLNEADKREENLRKALIDEKQFVAELENDLKYWQREHSVV 158

Query: 149 ELTSQKKLADANALIYEIAEKSLELEKKLYAAEAKLA 186
           + TS+ KL +ANAL+  + EK+LE++++   AE K +
Sbjct: 159 KSTSEAKLEEANALVIGMKEKALEVDRERAIAEEKFS 195

[Close]

BLAST of CmaCh04G019340 vs. TAIR 10
Match: AT1G67230.1 (little nuclei1 )

HSP 1 Score: 122.5 bits (306), Expect = 3.8e-28
Identity = 70/138 (50.72%), Postives = 96/138 (69.57%), Query Frame = 0


Query: 49  DWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQLEQGLAETVEIFKRERSAHFI 108
           D   L EK S L+ ELF+YQH+MGL+L+EK+  +S+ + L+Q   E  E  K+ER+AH I
Sbjct: 48  DPRILPEKISELEKELFEYQHSMGLLLIEKKEWSSQYEALQQAFEEVNECLKQERNAHLI 107

Query: 109 ALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEIELTSQKKLADANALIYEIAE 168
           A+++VE R + L+KAL  EKQ    L+KAL E + E AEI+ T+  KL +ANAL+  + E
Sbjct: 108 AIADVEKREEGLRKALGIEKQCALDLEKALKELRAENAEIKFTADSKLTEANALVRSVEE 167

Query: 169 KSLELEKKLYAAEAKLAE 187
           KSLE+E KL A +AKLAE
Sbjct: 168 KSLEVEAKLRAVDAKLAE 185

[Close]

BLAST of CmaCh04G019340 vs. TAIR 10
Match: AT5G65770.1 (little nuclei4 )

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-22
Identity = 58/158 (36.71%), Postives = 104/158 (65.82%), Query Frame = 0


Query: 31  WRKFKKAGLLDAAAMERKDWEALLEKASRLQSELFDYQHNMGLILLEKEACASKCDQLEQ 90
           W++ K AG  D  +++ +D  AL+   ++L+SE++DYQHNMGL+LLEK   +S+ ++++ 
Sbjct: 41  WKRLKDAG-FDEQSIKNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKA 100

Query: 91  GLAETVEIFKRERSAHFIALSEVETRRDTLKKALAAEKQHVSSLKKALCEAKEECAEIEL 150
            + E+     RE+SA+  AL+E + R ++LKK +   K+ +SSL+K L E + ECAE ++
Sbjct: 101 SVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKV 160

Query: 151 TSQKKLADANALIYEIAEKSLELEKKLYAAEAKLAECH 189
           ++   +++A+ +I +  +K  + E K+ AAEA  AE +
Sbjct: 161 SAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEAN 197

The following BLAST results are available for this feature:

BLAST of CmaCh04G019340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAF6	2.4e-40	50.55	Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana OX=3702 GN=CRWN2 PE=1 SV=1	[more]
I0J0E7	1.7e-33	46.20	Nuclear matrix constituent protein 1 OS=Allium cepa OX=4679 GN=NMCP1 PE=2 SV=1	[more]
Q9CA42	1.3e-30	45.86	Protein CROWDED NUCLEI 3 OS=Arabidopsis thaliana OX=3702 GN=CRWN3 PE=1 SV=1	[more]
A0A166B1A6	1.4e-27	50.00	Nuclear matrix constituent protein 1 OS=Daucus carota subsp. sativus OX=79200 GN...	[more]
F4HRT5	5.3e-27	50.72	Protein CROWDED NUCLEI 1 OS=Arabidopsis thaliana OX=3702 GN=CRWN1 PE=1 SV=1	[more]

BLAST of CmaCh04G019340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K308	3.4e-77	100.00	protein CROWDED NUCLEI 2-like OS=Cucurbita maxima OX=3661 GN=LOC111490200 PE=3 S...	[more]
A0A6J1K004	8.3e-76	86.96	protein CROWDED NUCLEI 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1EPS4	3.2e-75	86.41	protein CROWDED NUCLEI 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1EVX0	1.1e-72	95.60	protein CROWDED NUCLEI 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436469 PE=3...	[more]
A0A1S3CSZ3	1.2e-69	82.42	protein CROWDED NUCLEI 3 OS=Cucumis melo OX=3656 GN=LOC103504607 PE=3 SV=1	[more]

BLAST of CmaCh04G019340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601703.1	1.4e-85	93.55	Succinate dehydrogenase assembly factor 2, mitochondrial, partial [Cucurbita arg...	[more]
XP_022994499.1	7.0e-77	100.00	protein CROWDED NUCLEI 2-like [Cucurbita maxima] >XP_022994505.1 protein CROWDED...	[more]
XP_022993965.1	1.7e-75	86.96	protein CROWDED NUCLEI 1-like isoform X1 [Cucurbita maxima] >XP_022993975.1 prot...	[more]
KAG7032453.1	2.2e-75	86.96	Protein CROWDED NUCLEI 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601702.1	2.2e-75	86.96	Protein CROWDED NUCLEI 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh04G019340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13220.1	1.7e-41	50.55	nuclear matrix constituent protein-related	[more]
AT1G13220.2	1.7e-41	50.55	nuclear matrix constituent protein-related	[more]
AT1G68790.1	9.5e-32	45.86	little nuclei3	[more]
AT1G67230.1	3.8e-28	50.72	little nuclei1	[more]
AT5G65770.1	2.4e-22	36.71	little nuclei4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	COILS	Coil	Coil	coord: 40..60
None	No IPR available	PANTHER	PTHR31908:SF9	PROTEIN CROWDED NUCLEI 3	coord: 4..188
IPR040418	Protein crowded nuclei	PANTHER	PTHR31908	PROTEIN CROWDED NUCLEI 4	coord: 4..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019340.1	CmaCh04G019340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006997	nucleus organization
cellular_component	GO:0005652	nuclear lamina
cellular_component	GO:0005634	nucleus