CmaCh04G017730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G017730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 8918077 .. 8918982 (+)
RNA-Seq Expression	CmaCh04G017730
Synteny	CmaCh04G017730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATTCTTTTGGAAGTTGAAACTGCTTGGACAGTTGATCTAATTCCATGGGTGGAAGTTATGTGTAGATATCTGTTTTCTTTGAGTGGTTTGGTTCAAGGAGTTTATCTATTCATTGAGTGGGTGAACTTGCTGTCACGAAAGCAGCAAATTAGACAACCCCCGTGCATTGCCATTGTATTTGAGGCTCTTGTGCTTTCTTTCTTCCCCTTACTAGGAAATTTTGTATACACGACTACTATTTATATCATGTATTCATATCTACCAGGTTTCTAGTTCTCGTTCTGATAAATTGCATATTGTTACGACTTGGAGCCTGTTGGAAATGACTTTTCATGTGCCTAAAAGAGTGTTCCTATGTTCCTGTTATATTTAGCAGCTACTGAAATCAGATTGGCATTTATTAGGCAGCCTGGTGGTAGGTTTCCATCAATGTAGAAAGATTATGTTATCTTTTATGATGTCGACACTTTCTGTCATAGTTGTAAACCAAGTGACCAAATTTACTCTTCGACCTAGCAGGGACATGAGGTTGAGACAAATCTGGCCAGATATTTTTGGTATGTCGGAGACCTCGCAAGGTTTGTTTCTGTGGTATATGAGGGCTGTACATACGAGAGAAGTGTCTTGTTCTTCAACTTGATTTTCCAATGAAAGAAGGCTTTTAACTTTATTCTGGCTTTCCAGTGTCCTGGATATTCCTCAACTGAATAACTTTTACCCTTGCTTTTTATGGGCTGTCTCTTTCGTGTTCCAGCTAAAATAAAAAAAAAAACCTTAGTGACCCTTCTCCCAAAAGAAGGTATTGGATTCAAATCTGGATATCTCCTTTCTCTGGCAGGTTACATTCCTGGCTCCATTCTCGTGAACCGAAAACGCCAGAAAACCAGAGACCTCATGTAA

mRNA sequence

ATGTTAATTCTTTTGGAAGTTGAAACTGCTTGGACAGTTGATCTAATTCCATGGGTGGAAGTTATGTGTAGATATCTGTTTTCTTTGAGTGGTTTGGTTCAAGGAGTTTATCTATTCATTGAGTGGGTGAACTTGCTGTCACGAAAGCAGCAAATTAGACAACCCCCGTGCATTGCCATTGTATTTGAGGCTCTTGTGCTTTCTTTCTTCCCCTTACTAGGAAATTTTGTATACACGACTACTATTTATATCATGTATTCATATCTACCAGCTACTGAAATCAGATTGGCATTTATTAGGCAGCCTGGTGTTGTAAACCAAGTGACCAAATTTACTCTTCGACCTAGCAGGGACATGAGGTTGAGACAAATCTGGCCAGATATTTTTGGTATGTCGGAGACCTCGCAAGGTTACATTCCTGGCTCCATTCTCGTGAACCGAAAACGCCAGAAAACCAGAGACCTCATGTAA

Coding sequence (CDS)

ATGTTAATTCTTTTGGAAGTTGAAACTGCTTGGACAGTTGATCTAATTCCATGGGTGGAAGTTATGTGTAGATATCTGTTTTCTTTGAGTGGTTTGGTTCAAGGAGTTTATCTATTCATTGAGTGGGTGAACTTGCTGTCACGAAAGCAGCAAATTAGACAACCCCCGTGCATTGCCATTGTATTTGAGGCTCTTGTGCTTTCTTTCTTCCCCTTACTAGGAAATTTTGTATACACGACTACTATTTATATCATGTATTCATATCTACCAGCTACTGAAATCAGATTGGCATTTATTAGGCAGCCTGGTGTTGTAAACCAAGTGACCAAATTTACTCTTCGACCTAGCAGGGACATGAGGTTGAGACAAATCTGGCCAGATATTTTTGGTATGTCGGAGACCTCGCAAGGTTACATTCCTGGCTCCATTCTCGTGAACCGAAAACGCCAGAAAACCAGAGACCTCATGTAA

Protein sequence

MLILLEVETAWTVDLIPWVEVMCRYLFSLSGLVQGVYLFIEWVNLLSRKQQIRQPPCIAIVFEALVLSFFPLLGNFVYTTTIYIMYSYLPATEIRLAFIRQPGVVNQVTKFTLRPSRDMRLRQIWPDIFGMSETSQGYIPGSILVNRKRQKTRDLM

Homology

[Close]

BLAST of CmaCh04G017730 vs. ExPASy TrEMBL
Match: A0A5A7SYS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G002680 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MLILLEVETAWTVDLIPWVEVMCRYLFSLSGLVQGVYLFIEWVNLLS 48
           MLILLEV TAWTV+LIPWVEVMCRYL SL      VYLFI WVNLLS
Sbjct: 382 MLILLEVVTAWTVELIPWVEVMCRYLSSLGWFGSRVYLFIGWVNLLS 428

[Close]

BLAST of CmaCh04G017730 vs. ExPASy TrEMBL
Match: A0A5D3CUS1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001480 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-09
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MLILLEVETAWTVDLIPWVEVMCRYLFSLSGLVQGVYLFIEWVNLLS 48
           MLILLEV TAWTV+LIPWVEVMCRYL SL      VYLFI WVNLLS
Sbjct: 348 MLILLEVVTAWTVELIPWVEVMCRYLSSLGWFGSRVYLFIGWVNLLS 394

[Close]

BLAST of CmaCh04G017730 vs. NCBI nr
Match: KAA0034269.1 (hypothetical protein E6C27_scaffold65G002680 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-09
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MLILLEVETAWTVDLIPWVEVMCRYLFSLSGLVQGVYLFIEWVNLLS 48
           MLILLEV TAWTV+LIPWVEVMCRYL SL      VYLFI WVNLLS
Sbjct: 382 MLILLEVVTAWTVELIPWVEVMCRYLSSLGWFGSRVYLFIGWVNLLS 428

[Close]

BLAST of CmaCh04G017730 vs. NCBI nr
Match: TYK15651.1 (hypothetical protein E5676_scaffold35G001480 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-09
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 1   MLILLEVETAWTVDLIPWVEVMCRYLFSLSGLVQGVYLFIEWVNLLS 48
           MLILLEV TAWTV+LIPWVEVMCRYL SL      VYLFI WVNLLS
Sbjct: 348 MLILLEVVTAWTVELIPWVEVMCRYLSSLGWFGSRVYLFIGWVNLLS 394

The following BLAST results are available for this feature:

BLAST of CmaCh04G017730 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G017730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYS3	1.9e-09	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CUS1	1.9e-09	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh04G017730 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034269.1	3.9e-09	78.72	hypothetical protein E6C27_scaffold65G002680 [Cucumis melo var. makuwa]	[more]
TYK15651.1	3.9e-09	78.72	hypothetical protein E5676_scaffold35G001480 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh04G017730 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G017730.1	CmaCh04G017730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006487	protein N-linked glycosylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity