CmaCh04G016640 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G016640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 8373153 .. 8373793 (-)
RNA-Seq ExpressionCmaCh04G016640
SyntenyCmaCh04G016640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATAACTCTTCTTTCTGTAATCCCCACTCAATTTGTGACTTTGAGATCCAAACAAAGAGTTTAAGCTTAAATCAAAGATTTCTATGTGCTTCACTTCACCAACCCATTCTCTTGCAATATATATATATATATATATCTATAAACACATAAACATGCGAGTTACAAGGGGATGAAGATCAAAACCGTGTAATGAAAATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGTACACAACCTTCAAACCTTGTTTAATGAAATTACTTCCTCTCTAATTCTCAGTTCATCTTAATAAGTTTATATATTCACAGGAGCTGCAATTATGCTCCATCTTGGCCAAGATGTTCCAGCTTCCCAAGCTGCACATCAGGTATGTGTATATGTAATTATTAAATGAAATGATTTTGAATTGATGGGTTTATTCAACGGCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGAATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTCGGCACACTCCAAAGCCAACTGGGAGAGTTTGATAGAATAAATGTTCATCAAAATGTCTCATGTGAAGTCTTAACTTAATCCAAAAGAATCAG

mRNA sequence

TATATAACTCTTCTTTCTGTAATCCCCACTCAATTTGTGACTTTGAGATCCAAACAAAGAGTTTAAGCTTAAATCAAAGATTTCTATGTGCTTCACTTCACCAACCCATTCTCTTGCAATATATATATATATATATATCTATAAACACATAAACATGCGAGTTACAAGGGGATGAAGATCAAAACCGTGTAATGAAAATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGAGCTGCAATTATGCTCCATCTTGGCCAAGATGTTCCAGCTTCCCAAGCTGCACATCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGAATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTCGGCACACTCCAAAGCCAACTGGGAGAGTTTGATAGAATAAATGTTCATCAAAATGTCTCATGTGAAGTCTTAACTTAATCCAAAAGAATCAG

Coding sequence (CDS)

ATGAAAATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGAGCTGCAATTATGCTCCATCTTGGCCAAGATGTTCCAGCTTCCCAAGCTGCACATCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGAATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTCGGCACACTCCAAAGCCAACTGGGAGAGTTTGA

Protein sequence

MKMAGQTQHFLMVLILLSLLLSASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDRMNLQYNDYPVSEANPRHTPKPTGRV
Homology
BLAST of CmaCh04G016640 vs. ExPASy TrEMBL
Match: A0A1S3BEE6 (uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 1   MKMAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLN 60
           MKMA QTQH +M  +LLSLL+      SAS A  M+HLGQD PASQAA+QK QP + L N
Sbjct: 26  MKMADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWN 85

Query: 61  DRMNLQYNDYPVSEANPRHTPKPTGRV 82
            RM+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 86  GRMDLQFNDYQIFGANPRHTPKPTGKV 112

BLAST of CmaCh04G016640 vs. ExPASy TrEMBL
Match: A0A0A0KQN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-17
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3  MAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDR 62
          MA QTQH +M   L+SLL+      SAS A +M+HLGQD PASQA +QK QPL+ L N R
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 63 MNLQYNDYPVSEANPRHTPKPTGRV 82
          M+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of CmaCh04G016640 vs. ExPASy TrEMBL
Match: A0A5A7SX31 (Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1932G00360 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3  MAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDR 62
          MA QTQH +M  +LLSLL+      SAS A  M+HLGQD PASQAA+QK QP + L N R
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 63 MNLQYNDYPVSEANPRHTPKPTGRV 82
          M+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of CmaCh04G016640 vs. NCBI nr
Match: KAG7032221.1 (hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 7.9e-30
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 0

Query: 3  MAGQTQHFLMVLILLSLLLSASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDRMNLQYN 62
          MAGQTQHFLMVLILLSLLLSASGAAIM+HLGQD  ASQAAHQ KQPLQKLLNDRM+LQYN
Sbjct: 1  MAGQTQHFLMVLILLSLLLSASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDRMDLQYN 60

Query: 63 DYPVSEANPRHTPKPTGRV 82
          DYPVSEAN RHTPKPTGRV
Sbjct: 61 DYPVSEANHRHTPKPTGRV 79

BLAST of CmaCh04G016640 vs. NCBI nr
Match: KAG6601439.1 (hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 4.5e-25
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0

Query: 12 MVLILLSLLLSASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDRMNLQYNDYPVSEANP 71
          MVLILLSLLLSASGAAIM+HLGQD  ASQAAHQKKQPLQKLLNDRM+LQYNDYPVSEAN 
Sbjct: 1  MVLILLSLLLSASGAAIMIHLGQDFSASQAAHQKKQPLQKLLNDRMDLQYNDYPVSEANH 60

Query: 72 RHTPKPTGRV 82
          RHTPKPTGRV
Sbjct: 61 RHTPKPTGRV 70

BLAST of CmaCh04G016640 vs. NCBI nr
Match: XP_008446367.1 (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-18
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 1   MKMAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLN 60
           MKMA QTQH +M  +LLSLL+      SAS A  M+HLGQD PASQAA+QK QP + L N
Sbjct: 26  MKMADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWN 85

Query: 61  DRMNLQYNDYPVSEANPRHTPKPTGRV 82
            RM+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 86  GRMDLQFNDYQIFGANPRHTPKPTGKV 112

BLAST of CmaCh04G016640 vs. NCBI nr
Match: KGN51928.1 (hypothetical protein Csa_009059 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3  MAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDR 62
          MA QTQH +M   L+SLL+      SAS A +M+HLGQD PASQA +QK QPL+ L N R
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 63 MNLQYNDYPVSEANPRHTPKPTGRV 82
          M+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

BLAST of CmaCh04G016640 vs. NCBI nr
Match: KAA0034426.1 (putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipoprotein yfhM [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 3  MAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDR 62
          MA QTQH +M  +LLSLL+      SAS A  M+HLGQD PASQAA+QK QP + L N R
Sbjct: 1  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 60

Query: 63 MNLQYNDYPVSEANPRHTPKPTGRV 82
          M+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BEE62.0e-1863.22uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=... [more]
A0A0A0KQN61.3e-1761.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1[more]
A0A5A7SX312.2e-1762.35Putative lipoprotein yfhM OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
KAG7032221.17.9e-3092.41hypothetical protein SDJN02_06264, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601439.14.5e-2592.86hypothetical protein SDJN03_06672, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008446367.14.1e-1863.22PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo][more]
KGN51928.12.6e-1761.18hypothetical protein Csa_009059 [Cucumis sativus][more]
KAA0034426.14.5e-1762.35putative lipoprotein yfhM [Cucumis melo var. makuwa] >TYK17708.1 putative lipopr... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G016640.1CmaCh04G016640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane