CmaCh04G016260 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G016260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRRM domain-containing protein
LocationCma_Chr04: 8198677 .. 8199986 (-)
RNA-Seq ExpressionCmaCh04G016260
SyntenyCmaCh04G016260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGTAGGGGCTAAATTTGCAGAGGGCGGAGGTGAAATTGGGGCATAAGGCGCAGTTTCCTTGGCATCAACCATTCTCTGCCGCCGCTCCCCCGAGAAGCGATGGGTCGAAAGAGAGATAAACCTTACCCTTCCACCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAAATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCTCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCCCTTTTATTTTTCTGCACTTCTGAAGTAGAAAAGGCTCTCGGCGAAAATATAGAGTAAATTGGAAGCTCTCTTCTGATCATTCTAGTTGGGTGGAGATTTATGTACCAGATTTTGTTTATCTTTTACTGTTTGCTGCATTTCTCGCATTCCTATATTGAAAATTTGAACTATTCCTTCATCCACTTTCGCAAATTTCTCAAGGCCCATCTGAATTTAGGTCTTGATTTTGCGTGCGAAACTCTAAATTGGCTAGGGCTTGAGACTCAATTGGATTTGCTGCTCTACTAGTTTTCATTGTGAATGATGAAATTGAGGACATTACCACAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAATAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAAGGTTATAGATTACTTCATTATTTGATAGTTTGTCTGTTTGTTTGCTCTTTTTTGGGTATATTATGGTGAAGTATAGATTGAGTGTTCGAGTGCATAACTGTTTATGCTAGATTTCTCCCAATTCCCCCTTAATTCTTACGAGTTCAAGCTTATTTATGGTCCTAAATTCATGTGTGTGTTATAAATGTAAATCTTCCGTTAATACAAGGAAACTCTAGCTTCTCACCAAAGCTTTGTTGCATAATTAGTGCGTTCTTTTTTTCGAACTGTTCTGAGTTCATCAAGATGCTGG

mRNA sequence

CGTGTAGGGGCTAAATTTGCAGAGGGCGGAGGTGAAATTGGGGCATAAGGCGCAGTTTCCTTGGCATCAACCATTCTCTGCCGCCGCTCCCCCGAGAAGCGATGGGTCGAAAGAGAGATAAACCTTACCCTTCCACCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAAATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCTCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAATAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAAGGTTATAGATTACTTCATTATTTGATAGTTTGTCTGTTTGTTTGCTCTTTTTTGGGTATATTATGGTGAAGTATAGATTGAGTGTTCGAGTGCATAACTGTTTATGCTAGATTTCTCCCAATTCCCCCTTAATTCTTACGAGTTCAAGCTTATTTATGGTCCTAAATTCATGTGTGTGTTATAAATGTAAATCTTCCGTTAATACAAGGAAACTCTAGCTTCTCACCAAAGCTTTGTTGCATAATTAGTGCGTTCTTTTTTTCGAACTGTTCTGAGTTCATCAAGATGCTGG

Coding sequence (CDS)

ATGGGTCGAAAGAGAGATAAACCTTACCCTTCCACCCACCACTCTACGTCCTTCGCTAAGAGGCGGCGCCATCAGCCGCCGGCATCGTTGCCTGCGGAGGACGATGATGTGGACAAGCCCTTGCCGAAGCCTGCGCCGCCGCTTGCCCTAGTCGTCGTTGACCTTCCGTCACACTGCTCGGTGCTTGACTTGAAGTCCCGATTTGAAATCTACGGATCCATCTCCCGCATCCGCATCGACCGTGATTGTGTTGGCTACATCATGTATCGTACCAAAGACTCCGCTGATGCTGCCATGGCCGCTGCTCTCGATCCCTCATTCGGCTTCACCATTGATTCCAAAAAGGTTCAGGTATTATGGGCGAATGATCCTCAAGTGCAATGGCGGCAAGGGATTAACGTTGGTGTTAACAAGAACAAGGAAATGTCATCGAAGCTCTTGCGGGCAGAAGTGCCACTGAGTAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACCCCAGAAAAAGCAATAGTTCGTCAAGGTCCGATGAGCCTTTCAGGGGCAGGGAAGTTGTTGCTTACGATGATATTCTCTAA

Protein sequence

MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDEPFRGREVVAYDDIL
Homology
[Close]
BLAST of CmaCh04G016260 vs. ExPASy Swiss-Prot
Match: P0CJ66 (Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-50
Identity = 106/206 (51.46%), Postives = 141/206 (68.45%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

[Close]
BLAST of CmaCh04G016260 vs. ExPASy TrEMBL
Match: A0A6J1KFA1 (uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.3e-104
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. ExPASy TrEMBL
Match: A0A6J1GYQ1 (uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.1e-103
Identity = 191/194 (98.45%), Postives = 192/194 (98.97%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. ExPASy TrEMBL
Match: A0A6J1DBZ8 (uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 6.2e-87
Identity = 166/194 (85.57%), Postives = 175/194 (90.21%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPYPS H  TS +KRRR  PP   P EDDD+DKP+PKPAPP ALV+VDLPS+CS
Sbjct: 1   MSRKRDKPYPSRHVPTSVSKRRRPLPPVPSPPEDDDIDKPIPKPAPPPALVIVDLPSNCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVG+I YRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGFIAYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNK  E+SSKLLRAEVPLSRHGRGN+LASTIVNPRKS+ SSR D 
Sbjct: 121 ANDPQVQWRQGINVGVNKKNELSSKLLRAEVPLSRHGRGNRLASTIVNPRKSDCSSRLDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFR REVVAYDDIL
Sbjct: 181 PFRAREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. ExPASy TrEMBL
Match: A0A5A7STE1 (Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003870 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 170/194 (87.63%), Postives = 179/194 (92.27%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS+H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CS
Sbjct: 1   MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 190

[Close]
BLAST of CmaCh04G016260 vs. ExPASy TrEMBL
Match: A0A5D3CUC0 (Thaumatin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00290 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 170/194 (87.63%), Postives = 179/194 (92.27%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS+H  TS AKRRR  PP+++   DDD++KP+ KPAPPLALVVVDLPS CS
Sbjct: 265 MGRKRDKPYPSSHLPTSAAKRRR-PPPSTV---DDDLEKPVSKPAPPLALVVVDLPSQCS 324

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAM AALDPSF FTIDSKKVQVLW
Sbjct: 325 VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMTAALDPSFAFTIDSKKVQVLW 384

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGR NKLASTIVNPR+SNSSSRSD 
Sbjct: 385 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRSNKLASTIVNPRRSNSSSRSDV 444

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 445 PFRGREVVAYDDIL 454

[Close]
BLAST of CmaCh04G016260 vs. NCBI nr
Match: XP_023000221.1 (uncharacterized protein At1g27050 [Cucurbita maxima])

HSP 1 Score: 387.5 bits (994), Expect = 6.8e-104
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. NCBI nr
Match: XP_023537967.1 (uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 384.8 bits (987), Expect = 4.4e-103
Identity = 192/194 (98.97%), Postives = 193/194 (99.48%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLAST+VNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTVVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. NCBI nr
Match: XP_022957251.1 (uncharacterized protein At1g27050 [Cucurbita moschata])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 191/194 (98.45%), Postives = 192/194 (98.97%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHSTSFAKRRRHQPPASLP EDDDVDKPLPKPAPP+ALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSTSFAKRRRHQPPASLPVEDDDVDKPLPKPAPPIALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. NCBI nr
Match: KAG6601405.1 (hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032185.1 hypothetical protein SDJN02_06228, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 381.3 bits (978), Expect = 4.9e-102
Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS HHS SFAKRRRHQPP SLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSPHHSASFAKRRRHQPPESLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE
Sbjct: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. NCBI nr
Match: XP_038892024.1 (uncharacterized protein At1g27050 [Benincasa hispida])

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-92
Identity = 177/194 (91.24%), Postives = 182/194 (93.81%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           MGRKRDKPYPS+H  TS AKRRR  PPA  P ED+D+DKPL KPAPPLALVVVDLPSHCS
Sbjct: 1   MGRKRDKPYPSSHLPTSVAKRRRPPPPAPSPTEDEDMDKPLSKPAPPLALVVVDLPSHCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VLDLKSRFEIYGSISRIRIDRDCVGYI YRTKDSADAAMAAALDPSF FTIDSKKVQVLW
Sbjct: 61  VLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLW 120

Query: 121 ANDPQVQWRQGINVGVNKNKEMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSNSSSRSDE 180
           ANDPQVQWRQGINVGVNKNKE+SSKLLRAEVPLSRHGRGNKLASTIVNPR+SNSSSRSD 
Sbjct: 121 ANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNPRRSNSSSRSDV 180

Query: 181 PFRGREVVAYDDIL 195
           PFRGREVVAYDDIL
Sbjct: 181 PFRGREVVAYDDIL 194

[Close]
BLAST of CmaCh04G016260 vs. TAIR 10
Match: AT1G27050.1 (homeobox protein 54 )

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-51
Identity = 106/206 (51.46%), Postives = 141/206 (68.45%), Query Frame = 0 

Query: 1   MGRKRDKPYPSTHHSTSFAKRRRHQPPASLPAEDDDVDKPLPKPAPPLALVVVDLPSHCS 60
           M RKRDKPY + H     +KRRR   P+S    D+ +DKP+ KP PP ALVV+ LP++CS
Sbjct: 1   MSRKRDKPYTNRHTPARISKRRRPWAPSS-SEHDEIIDKPITKPPPPPALVVMGLPANCS 60

Query: 61  VLDLKSRFEIYGSISRIRIDRDCVGYIMYRTKDSADAAMAAALDPSFGFTIDSKKVQVLW 120
           VL+LKSRFEIYGSISRIRI +D +G + YRT +SA+AA+A + +PSFG +IDSKK++V+W
Sbjct: 61  VLELKSRFEIYGSISRIRIHKDGIGSVSYRTAESAEAAIAGSHEPSFGISIDSKKLEVVW 120

Query: 121 ANDPQVQWRQGINVGVNKNK--EMSSKLLRAEVPLSRHGRGNKLASTIVNPRKSN----- 180
           A DP V+W++G+  G  K +    SSKLLR  +PL +HGR ++LAS IVNPR  N     
Sbjct: 121 ATDPLVKWKEGVTAGEGKERTSSFSSKLLRPVMPLRKHGRSSRLASAIVNPRSDNTKGIS 180

Query: 181 -----SSSRSDEPFRGREVVAYDDIL 195
                SS  +    + R +V YDDI+
Sbjct: 181 GDGGISSPATTSEVKQRNIVTYDDIV 205

The following BLAST results are available for this feature:
BLAST of CmaCh04G016260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0CJ664.5e-5051.46Uncharacterized protein At1g27050 OS=Arabidopsis thaliana OX=3702 GN=At1g27050 P... [more]
BLAST of CmaCh04G016260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KFA13.3e-104100.00uncharacterized protein At1g27050 OS=Cucurbita maxima OX=3661 GN=LOC111494480 PE... [more]
A0A6J1GYQ18.1e-10398.45uncharacterized protein At1g27050 OS=Cucurbita moschata OX=3662 GN=LOC111458691 ... [more]
A0A6J1DBZ86.2e-8785.57uncharacterized protein At1g27050 OS=Momordica charantia OX=3673 GN=LOC111019113... [more]
A0A5A7STE11.4e-8687.63Homeobox-leucine zipper protein ATHB-54 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3CUC01.4e-8687.63Thaumatin-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of CmaCh04G016260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023000221.16.8e-104100.00uncharacterized protein At1g27050 [Cucurbita maxima][more]
XP_023537967.14.4e-10398.97uncharacterized protein At1g27050 [Cucurbita pepo subsp. pepo][more]
XP_022957251.11.7e-10298.45uncharacterized protein At1g27050 [Cucurbita moschata][more]
KAG6601405.14.9e-10298.45hypothetical protein SDJN03_06638, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038892024.11.6e-9291.24uncharacterized protein At1g27050 [Benincasa hispida][more]
BLAST of CmaCh04G016260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27050.13.2e-5151.46homeobox protein 54 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 49..119
e-value: 1.0E-4
score: 31.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 50..101
e-value: 4.3E-6
score: 26.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 48..123
score: 10.42841
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..129
e-value: 2.0E-9
score: 39.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..181
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..41
NoneNo IPR availableCDDcd00590RRM_SFcoord: 52..94
e-value: 2.20237E-4
score: 36.5141
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 32..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G016260.1CmaCh04G016260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding