CmaCh04G015440 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G015440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr04: 7828612 .. 7830948 (-)
RNA-Seq Expression	CmaCh04G015440
Synteny	CmaCh04G015440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGCGATGGAACAGAGAGGATGAAATGGGTACGTGCATGGAGGTCACAAGAACAAGAACTGTAGAGAAATCACACAAGCAAGCTAGAAAAAGCAAACCCAGATCCAGGAAAGGCTCAAAAGAAAGAGAAACCAGAGAGATTGTAAGGAATGAAAGTGAAAGAGATGCAAAGGATCAGAGAAATGGAAATGGAAATGGGCAAAGGGAAGTGTTAGACCAGAGAGTGGTGAAGAAAAGGGGGGGGGGGGATTAGGCAAAGCACAATTCTCAAAAAAGGGCCAAAAAGCAATAATAGTAATAACAATAATAAATATAAGAGTGCCATAAACTACTGAAAGGGCTAAAAGCCCCAACCCCAAGTGAAAGCGAAATGTGGGGCATAGTCTTTTCCTTGTATGCATTGGAATGCCAAAGCAACTCCTTTTATCAGAGAAATAATTTAGTATAATTTTCTGTTAGCAAAATTTATTGCTATGAGAATAGGATGGCTAAAAGGGTAAAGTAGTTGGGGGAATTATGGGTTTAGACTTTAGAGAAGGTGGCTAAGAACATTAAAGCAGAGCTCTAGGATTAGGGTCAGGGTTAAAGTTTAGGGTTTAGGTATAGGACTGTGGGGGAAGGGAAGAGAACTAAATGGCCTTTAAAGGTACCATTTTTTTCCCATGCAGAAGAGAGAGAAGGTGCATGTGTATGCATGGAAGGAAACAAGTTGGGTTTTGGGCATTGGGTTTTGTTTTAATTTGGATTTTGAAGTGTTGTATTAAGGAGGGAAAAACAAAGGATGTATGTTAGGGTTTCACAGTCTTGAGGATCACTGCCCCAAAATTTGACAATACGTTTGTTTCCTACCAATATTCACTAATTTCAATCAAAATCGACTTCTACTTTGATTAATGCATAAAATTGTAATATAAGTTAGTGCTCACAAAATTTAACAGAAAGAAAAGATACTGCAAGTTTATTTTTCTTGATTTTTATGACGATTTTAAATCCAATAATACAATTTATTGAGATACAGAAACCAATGAGACCCCACTGTCAAAGTTGGTAAACATACTAACATTTTAGTATTTTTGTTAGTTTAGATATTCTTTTGATTAAAAGAATGTAGAAAAATAAAATATAAAAAATAATGAAGTTGCAACTGAACTTCATAGGAGTGGCTGATTATATATATAATTTAAACGTCATGTTTTCGAAACAATTCCCGATTCACAATTGGTAATTACAATAATAATGACTTCTGATTTCAGTGAATAATAATTGGAACTCAAGTCAGATATATAGAAGCAAAGAGAAAAAGATGGAGGTTATGAAGAACATTTTGAAATTATAGATGGAAATGATTGATTTATTTACTTTTAAAGAGAGAGAGAGAGAGCGTAAAGCACTACTCTAGGAGCCCCATTGGCGATCAGCTTGGTGAACCGCGCGGCTCGAAAAGAGGACACAGTTTGCTAGGCAGTTTTGCACAAACGGATCAGTGAAAGGAAAACGACATTCCATCTTTAAATCTGCACTCTATGAATTCGATACTTCGTTTCAAATTTTTCTTCAGAGATAAAATAAATGCAATTGCAAATGCATTTTGGAATTTCGTATTAAGAGAGAGAATGATTCATGAATCGAAGATGAAATGAAGAATAATCTTACAGGGAGAGAGATTCAGAAGGTGTATTAGGGCTTCTGAGAGATTTATATTAACAATTGATGAGGCTTGTTCAATCGCGGTGGACTTCAGGCTTTCTGGTCGATCCAACATGCAGCCGTTGAGGCAGAGCACTGGCGCTACCGCTGCCGCCTACATTCTCCAATGGCGAACTGACACGAAGACGCGATTTGGATCAATTAAAGCATTGAATGAAGTAAAGAGAAATGGAAAAGGAAATTGCAGCGTTGAAGGTTTTCTAGGGTTTGGAAATGGAGGCACTGAGAGGTCATTTTCTAATCAAAATTTTAGAAGAGTTTGATTAAAAAAATGGTTAAATTGTTAATTTAGTTCTCATATTTTCAAATAACTCTTAATTAAGTTTATAATAATTTATTAAAATTAATTAATGTCTAATTAAAATTTAAACTTTTTAAATCAAGTTTAAGAAATAAAAATTTAATTTGTAATTAATTAAATAAAGATTGAACGGTAAGAAACAATGAAACACTGAGCCATGCCGATGGCGATGGCATTTGGGCTATCCGCTTAAAACATTCCACCGCGTTTGGAGCAGTTTCTTAGGTAATTTCTGCAGTCGCGAATGGTTTTGAATAATAAAAGCGCATAAGGCCTAAGCACTGCAGAAGCGCTTTTCATCAATTTCCTACCACTTTCGCCTGA

mRNA sequence

ATGGAGAAGCGATGGAACAGAGAGGATGAAATGGGTACGTGCATGGAGGTCACAAGAACAAGAACTGTAGAGAAATCACACAAGCAAGCTAGAAAAAGCAAACCCAGATCCAGGAAAGGCTCAAAAGAAAGAGAAACCAGAGAGATTGTAAGGAATGAAAGTGAAAGAGATGCAAAGGATCAGAGAAATGGAAATGGAAATGGGCAAAGGGAAGTGTTAGACCAGAGAGTGGGAGAGAGATTCAGAAGGTGTATTAGGGCTTCTGAGAGATTTATATTAACAATTGATGAGGCTTGTTCAATCGCGGTGGACTTCAGGCTTTCTGGTCGATCCAACATGCAGCCGTTGAGGCAGAGCACTGGCGCTACCGCTGCCGCCTACATTCTCCAATGGCGAACTGACACGAAGACGCGATTTGGATCAATTAAAGCATTGAATGAAGTAAAGAGAAATGGAAAAGGAAATTGCAGCGTTGAAGGTTTTCTAGGGTTTGGAAATGGAGGCACTGAGAGGCCTAAGCACTGCAGAAGCGCTTTTCATCAATTTCCTACCACTTTCGCCTGA

Coding sequence (CDS)

ATGGAGAAGCGATGGAACAGAGAGGATGAAATGGGTACGTGCATGGAGGTCACAAGAACAAGAACTGTAGAGAAATCACACAAGCAAGCTAGAAAAAGCAAACCCAGATCCAGGAAAGGCTCAAAAGAAAGAGAAACCAGAGAGATTGTAAGGAATGAAAGTGAAAGAGATGCAAAGGATCAGAGAAATGGAAATGGAAATGGGCAAAGGGAAGTGTTAGACCAGAGAGTGGGAGAGAGATTCAGAAGGTGTATTAGGGCTTCTGAGAGATTTATATTAACAATTGATGAGGCTTGTTCAATCGCGGTGGACTTCAGGCTTTCTGGTCGATCCAACATGCAGCCGTTGAGGCAGAGCACTGGCGCTACCGCTGCCGCCTACATTCTCCAATGGCGAACTGACACGAAGACGCGATTTGGATCAATTAAAGCATTGAATGAAGTAAAGAGAAATGGAAAAGGAAATTGCAGCGTTGAAGGTTTTCTAGGGTTTGGAAATGGAGGCACTGAGAGGCCTAAGCACTGCAGAAGCGCTTTTCATCAATTTCCTACCACTTTCGCCTGA

Protein sequence

MEKRWNREDEMGTCMEVTRTRTVEKSHKQARKSKPRSRKGSKERETREIVRNESERDAKDQRNGNGNGQREVLDQRVGERFRRCIRASERFILTIDEACSIAVDFRLSGRSNMQPLRQSTGATAAAYILQWRTDTKTRFGSIKALNEVKRNGKGNCSVEGFLGFGNGGTERPKHCRSAFHQFPTTFA

Homology

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BLAST of CmaCh04G015440 vs. NCBI nr
Match: KAG6601328.1 (hypothetical protein SDJN03_06561, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-40
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 80  RFRRCIRASERFILTIDEACSIAVDFRLSGRSNMQPLRQSTG----ATAAAYILQWRTDT 139
           RFRRCIRASERFI+TIDEACSIAV+FRLSGRSNMQPLRQSTG    ATAAAYIL+WRTDT
Sbjct: 11  RFRRCIRASERFIITIDEACSIAVEFRLSGRSNMQPLRQSTGATATATAAAYILRWRTDT 70

Query: 140 KTRFGSIKALNEVKRNGKGNCSVEGFLGFGNGGTER 172
           KTRFGSIKALNEVKRNGKGNCSVEGFLGFGNGGTER
Sbjct: 71  KTRFGSIKALNEVKRNGKGNCSVEGFLGFGNGGTER 106

The following BLAST results are available for this feature:

BLAST of CmaCh04G015440 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015440 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601328.1	1.3e-40	92.71	hypothetical protein SDJN03_06561, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh04G015440 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G015440.1	CmaCh04G015440.1	mRNA