CmaCh04G014240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G014240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S acidic ribosomal protein P2-like
Location	Cma_Chr04: 7273886 .. 7275531 (-)
RNA-Seq Expression	CmaCh04G014240
Synteny	CmaCh04G014240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATTTGAAGCCATCGGCTTCATTTACGGAACCCTAACTGAACTCTCTCATTTTCCTTCTACTGATTCCGATTGGCTTCTACTAAGGATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGACATTCTCGGATCTGGTAAAATCCGCATCTCGCTCTTTCCCCGCTTGTTTATTTTATCGATTTATCATTTTAAAGATTTTTCAGGAATTTTTTGTTCGACGTTAGATTTATAGGATTGTTTTGTTAGTTAGGTTATTGTTCTTTGATTCGCTTCGTTTCAATTCTTATGTCAAGCTATGGAGTTTCGCTTTTGATGGTTTGCGGTAGCTATTGTTGTTTGTTCTCTCTTCTTTTGTGCTGTTCGGCTTCAAATTTTATTAAATGATTATCGTTTTTTTTTTTTTTGGAGTTAATACGTGTTTGATTACTGATTGTCTTCATTATTGTCGTGCTTGAACGTGCTTTCTTTTAATAATCAGTTCATGCTTGAGAAACAATAGGAAGAATGGCTGTTATCCGTGGCTGGATATGATTAGATTCTAATTATATGTAATTTGTATCTATCCTACATTTTCGCGATTGTCTAAGAGAATAGTGTAATTCTACTTCAGACTGATTCTTAGGTTTAATTTGATATCCTTTTAATTGTTGTTATTTGGAATGCTCAATTCGATGCTTTTTTTATGTTTTGAATCCACAATTCTTTTCATCTAATGCAATGTTATATGTATGAATTTCATTTATCGCATTTGCTTTGGATATTGAATTACATGAAAGATTTAATATTTCTGATGGTGTCATAATTCTCTTTCCGGAACCATTTTGCAGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCCGCTGTGGCAGTTGCCGCATCTGGAGGTGGCGGCGGTGCGGCTGCCCCTGCTGCTGCAGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGTAAGTTTCTTAAATCTTTATGAAAATGTTGCTTGGAATTGCATGTTTAACATCGAAATTCTCTCATTATTATTAACCAATGGAAGCAATAATCTGACGAAAATAGATTCCCCACCTTATGAAACGTTAAATGTTTGCCTGGAAGGCCGAAAAACCTCACAGAACAAACATCTTTTCTTTAATTCACCATCTTTTTAGTTCATGTAATTTCTTCAAACTCCATGTTTACTATTTTGCAGGATATGGGCTTCAGTCTTTTCGATTAAGTATAATTACGAAGTCGAATGTTGTTCAGAGATTCTTCAAGATTTTAAGATTGGAATTTTTGTTTTTCACAATGTAGTCTTTTTCCAACATTATCCCCGTGTTATGATGAGCCGAATGTCAAATTTCTTTTCAGTTTATAAATTTAGTCTTAATTTTTTGGATGCTTTAAAACAAACGCCTTTGCTATTATATCGAAAACAAGGAATTGCTGCTGCTATGGCATGATTCCGAAAAATTGGAGGCCGTTGTGAATTTTCTGTTGCAGTTCCCTCTCCAACA

mRNA sequence

TATAATTTGAAGCCATCGGCTTCATTTACGGAACCCTAACTGAACTCTCTCATTTTCCTTCTACTGATTCCGATTGGCTTCTACTAAGGATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGACATTCTCGGATCTGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCCGCTGTGGCAGTTGCCGCATCTGGAGGTGGCGGCGGTGCGGCTGCCCCTGCTGCTGCAGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAAGTATAATTACGAAGTCGAATGTTGTTCAGAGATTCTTCAAGATTTTAAGATTGGAATTTTTGTTTTTCACAATGTAGTCTTTTTCCAACATTATCCCCGTGTTATGATGAGCCGAATGTCAAATTTCTTTTCAGTTTATAAATTTAGTCTTAATTTTTTGGATGCTTTAAAACAAACGCCTTTGCTATTATATCGAAAACAAGGAATTGCTGCTGCTATGGCATGATTCCGAAAAATTGGAGGCCGTTGTGAATTTTCTGTTGCAGTTCCCTCTCCAACA

Coding sequence (CDS)

ATGAAAATCGTAGCTGCTTATTTGCTCGCTGTTTTGGGAGGCAATGCCAGCCCTTCTGCTAAGGATTTGAAGGACATTCTCGGATCTGTTGGAGCGGAAGTTGATGAGGACAAAATCGAGCTTCTGATGTCTAGTGTTAAGGGTAAGGATATTACAGAGCTCATTGCATCCGGAAGAGAAAAGCTAGCATCTGTTCCTTCTGGTGGAGGTGCCGCTGTGGCAGTTGCCGCATCTGGAGGTGGCGGCGGTGCGGCTGCCCCTGCTGCTGCAGAGTCAAAGAAAGAAGAGAAGGTTGAAGAGAAGGAGGAATCAGACGATGATATGGGCTTCAGTCTTTTCGATTAA

Protein sequence

MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGREKLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD

Homology

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BLAST of CmaCh04G014240 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 147.9 bits (372), Expect = 7.0e-35
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAA+LLAVL G ASP+  D+KDILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA--SGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+  SGGGGG  AP AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh04G014240 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-34
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A S GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CmaCh04G014240 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-34
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVA-ASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA A+ GGGG    +AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh04G014240 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.5e-34
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AA+LLA+LGGN SP+ +DLK IL SVGA+ D+DKIELL+S VKGKDITELIASGRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           +LASVPSGGG AVA AA GGGG A A AA E KKEEK E  EESD+++GFSLFD
Sbjct: 61  RLASVPSGGGVAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

[Close]

BLAST of CmaCh04G014240 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 141.0 bits (354), Expect = 8.5e-33
Identity = 87/114 (76.32%), Postives = 94/114 (82.46%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK VAAYLLAVL GNASPSA DL  IL SVG EVD +K+ELL+S + GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           K ASVP GGG  VAVAA+    G AAP AAE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGG-GVAVAAAAPAAGGAAP-AAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of CmaCh04G014240 vs. ExPASy TrEMBL
Match: A0A6J1J1Z8 (60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC111482688 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. ExPASy TrEMBL
Match: A0A6J1GZ75 (60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC111458566 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.8e-47
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA+GGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. ExPASy TrEMBL
Match: A0A1S3BFW0 (60S acidic ribosomal protein P2-4-like OS=Cucumis melo OX=3656 GN=LOC103489399 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.0e-44
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN SPSAKDLKDILGSVGAE+DE++IELL+S+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. ExPASy TrEMBL
Match: A0A0A0KRE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615230 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. ExPASy TrEMBL
Match: A0A6J1FZV9 (60S acidic ribosomal protein P2-2-like OS=Cucurbita moschata OX=3662 GN=LOC111449424 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.6e-42
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN+SPSAKDLK+ILGSVGAEVD++KIELL+SSVKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSSPSAKDLKNILGSVGAEVDDEKIELLLSSVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAA-SGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAA+AVAA  GGGGG AAPAA ESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAMAVAAGGGGGGGGAAPAAEESKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CmaCh04G014240 vs. NCBI nr
Match: XP_022984367.1 (60S acidic ribosomal protein P2-4-like [Cucurbita maxima])

HSP 1 Score: 198.7 bits (504), Expect = 2.6e-47
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. NCBI nr
Match: XP_022957078.1 (60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S acidic ribosomal protein P2-1-like [Cucurbita pepo subsp. pepo] >KAG6601213.1 60S acidic ribosomal protein P2-4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032007.1 60S acidic ribosomal protein P2-4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 5.8e-47
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA+GGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAAGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. NCBI nr
Match: XP_008446770.1 (PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN SPSAKDLKDILGSVGAE+DE++IELL+S+VKGKD+TELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNTSPSAKDLKDILGSVGAEIDEERIELLLSNVKGKDVTELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. NCBI nr
Match: XP_004150488.1 (60S acidic ribosomal protein P2-4 [Cucumis sativus] >KGN52200.1 hypothetical protein Csa_009106 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.9e-43
Identity = 104/114 (91.23%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MKIVAAYLLAVLGGN++PSAKDLKDILGSVGAEVDE++I LL+S+VKGKDITELIASGRE
Sbjct: 1   MKIVAAYLLAVLGGNSNPSAKDLKDILGSVGAEVDEERINLLLSNVKGKDITELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGGAAVAVAA GGGGGAAAPA AE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAAVAVAAGGGGGGAAAPAPAEAKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of CmaCh04G014240 vs. NCBI nr
Match: KAF3958884.1 (hypothetical protein CMV_016251 [Castanea mollissima])

HSP 1 Score: 180.6 bits (457), Expect = 7.4e-42
Identity = 103/115 (89.57%), Postives = 111/115 (96.52%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK++AAYLLAVLGGN SPSA++LKDILGSVGAEVD+DKIELL+S VKGKDITELIASGRE
Sbjct: 60  MKVIAAYLLAVLGGNTSPSAENLKDILGSVGAEVDDDKIELLLSEVKGKDITELIASGRE 119

Query: 61  KLASVPSGGGAAVAVAASGGGGG-AAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AVAVAA+GGGGG AAAPAAAE+KKEEKVEEKEESDDDMGFSLFD
Sbjct: 120 KLASVPSGGGGAVAVAATGGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 174

[Close]

BLAST of CmaCh04G014240 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 147.9 bits (372), Expect = 5.0e-36
Identity = 87/116 (75.00%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAA+LLAVL G ASP+  D+KDILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVAA--SGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA+  SGGGGG  AP AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAP-AAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh04G014240 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-35
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A S GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CmaCh04G014240 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 146.4 bits (368), Expect = 1.4e-35
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+ AA+LLAVLGGNA+PSA ++KDI+G+VGA+VD + IELL+  V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 61  KLASVPSGGGAAVAVAASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG AV+ A S GGGGAAAPA    KKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAPSSGGGGAAAPA---EKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of CmaCh04G014240 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-35
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVA-ASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA A+ GGGG    +AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CmaCh04G014240 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-35
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MKIVAAYLLAVLGGNASPSAKDLKDILGSVGAEVDEDKIELLMSSVKGKDITELIASGRE 60
           MK+VAAYLLAVL G ASP++ D+K ILGSVGAE ++ +IELL+  VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KLASVPSGGGAAVAVA-ASGGGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD 115
           KLASVPSGGG  VAVA A+ GGGG    +AAESKKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

The following BLAST results are available for this feature:

BLAST of CmaCh04G014240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51407	7.0e-35	75.00	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9LXM8	2.0e-34	73.68	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
Q9SLF7	3.5e-34	73.04	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P41099	3.5e-34	73.68	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
P46252	8.5e-33	76.32	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]

BLAST of CmaCh04G014240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J1Z8	1.3e-47	100.00	60S acidic ribosomal protein P2-4-like OS=Cucurbita maxima OX=3661 GN=LOC1114826...	[more]
A0A6J1GZ75	2.8e-47	99.12	60S acidic ribosomal protein P2-1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3BFW0	5.0e-44	91.23	60S acidic ribosomal protein P2-4-like OS=Cucumis melo OX=3656 GN=LOC103489399 P...	[more]
A0A0A0KRE0	1.9e-43	91.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615230 PE=3 SV=1	[more]
A0A6J1FZV9	3.6e-42	90.43	60S acidic ribosomal protein P2-2-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of CmaCh04G014240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984367.1	2.6e-47	100.00	60S acidic ribosomal protein P2-4-like [Cucurbita maxima]	[more]
XP_022957078.1	5.8e-47	99.12	60S acidic ribosomal protein P2-1-like [Cucurbita moschata] >XP_023533493.1 60S ...	[more]
XP_008446770.1	1.0e-43	91.23	PREDICTED: 60S acidic ribosomal protein P2-4-like [Cucumis melo]	[more]
XP_004150488.1	3.9e-43	91.23	60S acidic ribosomal protein P2-4 [Cucumis sativus] >KGN52200.1 hypothetical pro...	[more]
KAF3958884.1	7.4e-42	89.57	hypothetical protein CMV_016251 [Castanea mollissima]	[more]

BLAST of CmaCh04G014240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27720.1	5.0e-36	75.00	60S acidic ribosomal protein family	[more]
AT3G44590.2	1.4e-35	73.68	60S acidic ribosomal protein family	[more]
AT3G44590.1	1.4e-35	73.68	60S acidic ribosomal protein family	[more]
AT2G27710.1	2.5e-35	73.04	60S acidic ribosomal protein family	[more]
AT2G27710.2	2.5e-35	73.04	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 17..113 e-value: 1.6E-25 score: 89.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..114
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 2..114
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..59 e-value: 3.1E-27 score: 96.5
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 2..114
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..114 e-value: 1.21393E-32 score: 108.505
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..114 score: 17.100977

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G014240.1	CmaCh04G014240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome