CmaCh04G013220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G013220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	sigma factor binding protein 1, chloroplastic-like
Location	Cma_Chr04: 6727794 .. 6728174 (+)
RNA-Seq Expression	CmaCh04G013220
Synteny	CmaCh04G013220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAATCGGCAAAAAACAGCCGAAGAGAACCAAGAAATCGGCCGCCAATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCCTGGAACTCATCGCAGGTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTAATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCATATCAATCGTTGGTTGCTCCGCCGGCAGATGATTTGGTTCTGCAGAACTTCGATGCGAGTTTTGAAGAAATGCTCCGTGGATTTTTTGCATGA

mRNA sequence

ATGGATGTAATCGGCAAAAAACAGCCGAAGAGAACCAAGAAATCGGCCGCCAATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCCTGGAACTCATCGCAGGTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTAATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCATATCAATCGTTGGTTGCTCCGCCGGCAGATGATTTGGTTCTGCAGAACTTCGATGCGAGTTTTGAAGAAATGCTCCGTGGATTTTTTGCATGA

Coding sequence (CDS)

ATGGATGTAATCGGCAAAAAACAGCCGAAGAGAACCAAGAAATCGGCCGCCAATTTCAAAGTCGTGTACATTTCGAGTCCGATGAAGGTGAAAACCAGCGCCTCGAAGTTTAGATCTCTCGTCCAGAAACTCACCGGCCAGGACTCTGACGCCGAGAGTTTCCTGGAACTCATCGCAGGTGATCGGAACTTTCAATCGTCCGCGTTCCTCGATTACCAAATCCTCGGCGATGACAATCTAATTAATCGCGACCATCGTCTTGTGGCGGGAAAGATCGAAACGGCGGCATATCAATCGTTGGTTGCTCCGCCGGCAGATGATTTGGTTCTGCAGAACTTCGATGCGAGTTTTGAAGAAATGCTCCGTGGATTTTTTGCATGA

Protein sequence

MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAGDRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEMLRGFFA

Homology

[Close]

BLAST of CmaCh04G013220 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 4  IGKKQPKRTKKSAAN---FKVVYISSPMKVKTSASKFRSLVQKLTGQDS 50
          + +K PK+ KK+ +     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of CmaCh04G013220 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-04
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 4  IGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 50
          I  KQ +++  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 22 IPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

[Close]

BLAST of CmaCh04G013220 vs. ExPASy TrEMBL
Match: A0A6J1JD32 (uncharacterized protein LOC111483942 OS=Cucurbita maxima OX=3661 GN=LOC111483942 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.9e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60
           MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG
Sbjct: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60

Query: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120

Query: 121 LRGFFA 127
           LRGFFA
Sbjct: 121 LRGFFA 126

[Close]

BLAST of CmaCh04G013220 vs. ExPASy TrEMBL
Match: A0A6J1GZT9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458651 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 9.7e-57
Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60
           MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA 
Sbjct: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA 60

Query: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSLVAPP DD VLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120

Query: 121 LRGFFA 127
           L GFFA
Sbjct: 121 LHGFFA 126

[Close]

BLAST of CmaCh04G013220 vs. ExPASy TrEMBL
Match: A0A6J1G190 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449759 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 93/135 (68.89%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MDVIGKKQPKR--TKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELI 60
           MD+  KKQ KR   K +AA+FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE F+ELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  A----GDRN-----FQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLV 120
           A     DRN       +SAFLDYQ+LGDD+L + DHRLVAGKIETAAYQS VAPP +DLV
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPP-EDLV 120

Query: 121 LQNFDASFEEMLRGF 125
           ++NFDASF EM + F
Sbjct: 121 MENFDASFAEMFQSF 134

[Close]

BLAST of CmaCh04G013220 vs. ExPASy TrEMBL
Match: A0A6J1HP65 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111466446 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.9e-36
Identity = 93/135 (68.89%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MDVIGKKQPKR--TKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELI 60
           MD+  K+Q KR   K +AA+FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE F+ELI
Sbjct: 1   MDLTAKQQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  A----GDRN-----FQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLV 120
           A     DRN       +SAFLDYQ+LGDD+L + DHRLVAGKIETAAYQS VAPP +DLV
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPP-EDLV 120

Query: 121 LQNFDASFEEMLRGF 125
           +QNFDASF EM + F
Sbjct: 121 MQNFDASFAEMFQSF 134

[Close]

BLAST of CmaCh04G013220 vs. ExPASy TrEMBL
Match: A0A6J1CBX0 (uncharacterized protein LOC111010149 OS=Momordica charantia OX=3673 GN=LOC111010149 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.3e-34
Identity = 94/138 (68.12%), Postives = 110/138 (79.71%), Query Frame = 0


Query: 1   MDVIGKKQPK--RTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELI 60
           MDVIG+KQ K  R+KKSAA+FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE F+ELI
Sbjct: 1   MDVIGRKQAKIRRSKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELI 60

Query: 61  ----AGDRNF----QSSAFLDYQIL--GDDNLINRD--HRLVAGKIETAAYQSLVAPPAD 120
               A DRN      S+AFLD+Q+L   DD+ I+RD  HRLV+G IE ++YQS +APP D
Sbjct: 61  AAAAAADRNHLQPSSSAAFLDHQLLCDADDDQIDRDNHHRLVSGNIE-SSYQSSIAPP-D 120

Query: 121 DLVLQNFDASFEEMLRGF 125
           DL+LQNFDA+F +M  GF
Sbjct: 121 DLILQNFDANFADMFHGF 136

[Close]

BLAST of CmaCh04G013220 vs. NCBI nr
Match: XP_022986090.1 (uncharacterized protein LOC111483942 [Cucurbita maxima])

HSP 1 Score: 244.2 bits (622), Expect = 6.0e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60
           MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG
Sbjct: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60

Query: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120

Query: 121 LRGFFA 127
           LRGFFA
Sbjct: 121 LRGFFA 126

[Close]

BLAST of CmaCh04G013220 vs. NCBI nr
Match: XP_023514832.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0


Query: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60
           MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIAG
Sbjct: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAG 60

Query: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSLVAPP DD VLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120

Query: 121 LRGFFA 127
           L GFFA
Sbjct: 121 LHGFFA 126

[Close]

BLAST of CmaCh04G013220 vs. NCBI nr
Match: XP_022957180.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6601120.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031918.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-56
Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 1   MDVIGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELIAG 60
           MDVIGKK PKRTKKSAA FKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESF+ELIA 
Sbjct: 1   MDVIGKKPPKRTKKSAAGFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFMELIAA 60

Query: 61  DRNFQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLVLQNFDASFEEM 120
           DRNFQSSAFLDYQILGDDNLI+RDHRLVAGKIETAAYQSLVAPP DD VLQNFDASFEEM
Sbjct: 61  DRNFQSSAFLDYQILGDDNLIDRDHRLVAGKIETAAYQSLVAPPEDDFVLQNFDASFEEM 120

Query: 121 LRGFFA 127
           L GFFA
Sbjct: 121 LHGFFA 126

[Close]

BLAST of CmaCh04G013220 vs. NCBI nr
Match: XP_038892750.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 165.2 bits (417), Expect = 3.6e-37
Identity = 100/135 (74.07%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MDVIGKKQPKRTKKS-AANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELI- 60
           M+V GKK PKR+KKS AANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAE F+ELI 
Sbjct: 1   MNVTGKKHPKRSKKSAAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIA 60

Query: 61  --AGDRNFQSSA---FLDYQILGDDNLINRDHRLVAGKIETAAYQSLVA--PPADDL-VL 120
             A DRN QSSA   FLDYQ+LGDD+L      LV+GK+ETAAY+S VA  PP DDL VL
Sbjct: 61  SAASDRNLQSSASAPFLDYQLLGDDDL------LVSGKVETAAYESSVAALPPLDDLAVL 120

Query: 121 QNFDASFEEMLRGFF 126
           QNFDASF EM  GF+
Sbjct: 121 QNFDASFAEMFHGFW 129

[Close]

BLAST of CmaCh04G013220 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 0


Query: 1   MDVIGKKQPKR--TKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAESFLELI 60
           MD+  KKQ KR   K +AA+FKVVYIS+PMKVKTSAS+FRSLVQKLTG DSDAE F+ELI
Sbjct: 1   MDLTAKKQSKRRSRKSAAADFKVVYISNPMKVKTSASRFRSLVQKLTGLDSDAERFMELI 60

Query: 61  A----GDRN-----FQSSAFLDYQILGDDNLINRDHRLVAGKIETAAYQSLVAPPADDLV 120
           A     DRN       +SAFLDYQ+LGDD+L + DHRLVAGKIETAAYQS VAPP +DLV
Sbjct: 61  AAAASSDRNNLQSSTSASAFLDYQLLGDDDLTDCDHRLVAGKIETAAYQSSVAPP-EDLV 120

Query: 121 LQNFDASFEEMLRGF 125
           +QNFDASF EM + F
Sbjct: 121 MQNFDASFAEMFQSF 134

[Close]

BLAST of CmaCh04G013220 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 50.8 bits (120), Expect = 9.1e-07
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 4  IGKKQPKRTKKSAAN---FKVVYISSPMKVKTSASKFRSLVQKLTGQDS 50
          + +K PK+ KK+ +     KV YIS+PM+V+T ASKFR LVQ+LTGQD+
Sbjct: 22 VSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDA 70

[Close]

BLAST of CmaCh04G013220 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 44.7 bits (104), Expect = 6.5e-05
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 4  IGKKQPKRTKKSAANFKVVYISSPMKVKTSASKFRSLVQKLTGQDS 50
          I  KQ +++  +    KV YIS+PM+V+T  SKFR LVQ+LTGQD+
Sbjct: 22 IPPKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDA 67

The following BLAST results are available for this feature:

BLAST of CmaCh04G013220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	1.3e-05	55.10	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	9.2e-04	52.17	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CmaCh04G013220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JD32	2.9e-61	100.00	uncharacterized protein LOC111483942 OS=Cucurbita maxima OX=3661 GN=LOC111483942...	[more]
A0A6J1GZT9	9.7e-57	93.65	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1G190	1.5e-36	68.89	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1HP65	1.9e-36	68.89	sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1CBX0	2.3e-34	68.12	uncharacterized protein LOC111010149 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of CmaCh04G013220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022986090.1	6.0e-61	100.00	uncharacterized protein LOC111483942 [Cucurbita maxima]	[more]
XP_023514832.1	4.0e-57	94.44	sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022957180.1	2.0e-56	93.65	sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG6601...	[more]
XP_038892750.1	3.6e-37	74.07	sigma factor binding protein 1, chloroplastic-like [Benincasa hispida]	[more]
XP_023542375.1	1.4e-36	69.63	sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh04G013220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	9.1e-07	55.10	sigma factor binding protein 1	[more]
AT2G41180.1	6.5e-05	52.17	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 24..50 e-value: 3.7E-12 score: 45.5
None	No IPR available	PANTHER	PTHR33624:SF14	OS07G0687400 PROTEIN	coord: 1..118
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G013220.1	CmaCh04G013220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity