CmaCh04G012870 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G012870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Gag-Pol polyprotein/retrotransposon
Location	Cma_Chr04: 6560104 .. 6564768 (+)
RNA-Seq Expression	CmaCh04G012870
Synteny	CmaCh04G012870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTCTTTCAAATGCCAACTCCACTTAAGCTCACCAATGGCGCCATCCCTTGCGTCGTTTTCCCGGTGGCGGTAAAAGCTTCACTCGATTTTGAAAATTCTGCGACATTTTAGAATCTGAATGCGTGAACATTTTAATTTCTATTATCATCTTCCCGAATTGTTATTCTTCAGGGTTCGAACGAATTGCAGCCGAAGACAATTTTCAGAGCTTCCCCGCCTTTTCGCGTCTCAAAGCCGAATAACATTTTTGTTAGTCGGAACCCTAGCATCCGACAATGCCTTAACAATGCCGAAATTAGCGTAAGTGTTTCTCAGTGAATTGGCAAAACAGCAATCTCCTTCACTTTCTGCAGTTTAATTCTTTCGTTCTATGGTGTTTTGTCCACTTGCTTCAGAATCTACGCCCTAATTTTTGGGATGGTTTCTGTGTTGTTTTGCTTATTGATGTCTCTTGCCAATTGAATTGTTCGGTCCGCGGAGCGATAATAATGTTACAAACTTCTAATTTCCCTGATTTTGCACCCTCTGAGTACCATCATGCCTTTCTTTTGTCTAATTGGTAATGAATGCTTTGGTATGCTTGGTTCTATGCATTCCATTTGGCCCCATCACTATTTTCGTTTGAATTGTGTTATTATTTCTTATATACTTCAGAACTGACACTTCTATGAAGTCGCTGGAAGACTATTTCTATGAAGATATTTTGCATGTTTAACTGTTGGTTTACTTTTATTGACTTCAGTTGTTTATATAAATAGAATGTGGCAGTAAATGAAATTTTAGGCATGGATGTTCCTGCATTTGGACAGGCGTATGTATTACTGATTAGATACTGTCAATGTCCTGTCGTAGGCCAATGATCCATTGAAATCGGAAAGTGGCTTTTCCAATCATGAAACTGAAGGTATGGCATTAAAAAACCGAACCTATGAACTCATGGTTGAGTCTTGATGCATTCAGTGAGCTTTAAATTTTTAAATGTCATATTCTTGATTAAGAACTTACGAATTCTCGTCCCTTTCATTCTCTCTCTTGTTAGGTTCGATGGAAAAGAATGAAAATCATAAAAAACATCCGCGAAAATCGATTGAGTACTACTACTTGCCTTGCATATATTTCGTGAATTCTAAGGCTACTGCTTTTTTCTGTTGATAATGCCATGGAGGTGGTGAGACCTTCCTTTTTCTGCTCAATCTCTCTCTACTCTCTAGTTTCTAATCAAAGTCATACTTGTACAACAAAGCTTAGCAACAAAAATAGTCTACTTCATGTTCCACTAATATTTGTACTGTTTTGTTGGTTAATGTCATTTTTAGTTTATATTGGTATATTATTTTACATTTAAGAACAAAGGGGGTCTCAGAATATATTTGATCCCCTAAGAATAATAAGTCATATCAAAGAGTAAGTCACAGCCCTCAGACAGGCAATTTTTCATATTTATTTTTTATAATATCATTACTTATTGGTCAAGTCAGCTTTGCGATTCTGGAATTTTGTAGTACATTAATGTTGGGTACAAAATACATAAAGTTATAAATTGAAAAAGAAACAAAGTTTCCGTTTAGCAACCACATGAAATGAAACAGAGATCTTCTTGGCTTTATCAAAATGTTACAAAGATCTTCTTGGCTCTATTGAAAGGAAACGAAGAACTCTTCTTGCCTTCACCGAAATGAAACAAAATCTGCTTGACTTTATCGAAAGGAAACAAAGTTCTTCTTGGCCTTATTGAAATGAAACAAACATCTTATTGGACGCATCAGTGCACACTTCATATTAGGCATACATCAGTCTTGGAGACATTACATTTCATTTTCGCTCATTTATTCTAGTACACGTTCATCTTGTAGGGTGCTGGATAAATTGAGGAGATATGGAGTTTCTGGAATATTGTCTTATGGATTGTTGAATACAGTCTACTATCTTACAACATTTCTTGTTGTGTGGTGAGTCCATTTCTATATTTACTACTTAGTTACTACTATTATGAATTACTACTACGTAGGAGAGACTTAAAGGCTTCATAAGTTTAGGAGGTTATTTGGTATGCGTGTTGGTGATTAGAATTGGATGTTCGGGGATGGAAATGATAGGAACCAGATGATTAGGCTTGGAAATTGTATAGAAAGATAGGTAAGAATTAAGAAACTACAGTAAGATGTTTGAAAGCAATTCTTGGAAGTTGGATGCTTCCACCTCCCTCAACCCCCCGTGTGAGTTTCAACCTTGAACAATCACAATATTGCTACGTCTTGTTGGTTAATTCCGCTCGTTACTATTCTCTCTGACAAACTACACTGCCAATTACCAAATTACCTGTACTCTCTAATTCTATCAAGTAACTATTTTGCGGAACTTTTTTTCACGTAATGACTGTAGCTAATGTTGATATTGATCTTGCCTTTTGGGCAGTGGTCAACATGGGGTTCCATACCTTTGGGGACTGTATTGGGATAATGGGTAGGTGATTAGAATTGGATGTTGGAGAACTCTTGAGGATCTTTGTTCATAATGGGTAGATGGTTCAGAGGAGGAAAGGCTCTTTTTTCAGGATATCCCGAGATTTTGGTTCCAATGGAGATTGGGTAGCGCTTATAGCTCAGAGCATTAGAGGACGTGGTTGTTAACTATAGTGCACACTACTTGCACCTAGATAAAAAGACCTTATGGAACTCTACTTTCGAAGAGCTAGAATTTCAGAATGTACGGGCTAAGGGTTTGGACATGATTCTTGCTTTCAATCAATATCAATTTAGTGGGACTCTGATTAAAAACACCTTTACTACCGATCAGCGGGCGATAACTTATTTTATGTTATTATTATTTAAAAATAATAATAATAACACTCCTTATGTCATACTATCGTTTGTCTTCTGTTTATTTCGTCTCTCTTCCATTAGCAGTGTACTTAGTCATGTTATCATGTTATTTATTTGCATTTTAGGTTCTACATTGCACCAGCACCTGCGAAAATGGGCTATGTTGCAGCTGCTGGAAGGTGAAAAACTTTATTGTAGGAGGCCCTTTTCGTATGGCTAGTTGCTTTACTCCTTTTGTTGAGCTATCATTTTGGTGAACGTTTTCTTTCATTTTTCTCAATGAAAGCTTGGTTTTATATTGAAAGAAATATTTGTGTAGGATGGAGTTTTATACTAAGACATCGACACATTATTACCTTGTAGATTTCTCAAGATAATGGCTACAATCTGGGCTGGAAGCCAAGTTACTAAGCTGGCAAGAGCAGCAGGGTGAGCTCTTATATTCCTGCTTTTTATCTAGTACTTTTCTGATACGTCATTCTGCTCATCATTAAACAACCCAACTATATGAACTGTAAGGTTCAACTTGTTTAGTGGAAAGGGCATTCACTTGTCAAATGGTTGCCTTTCTTTTCCAACTTCCATAACTTAGAAAGGCCTACTTGATAACATCTTTGTTTTCAGTTTTCTATATTTATAATTTAGCTCATGTGAGAGCCAAAACCCATCGCTAGCAGATACTGTTCTCTTTGGTCTTTTTCTTTCGGGCTTCCCCTCAAGGTTTTTAAAATGCGTCTTCTAGGGAGAAGTTTTCACACCCTTATAAATAATGCTTCGTTCTCCTCCCCAACCGATATGGGATCTCACAATCCACCCCCTTCGGGGCCCAGTATCCTCGCTGACATTCATTCCCTTCTCCAATCGATGTGGGACCCCTCAATCCACCCCTCTTCAGAGCCCAGCGTCCTTGTTGGCACACCGCCTCTTGTCCACCCCCTTTGAAGTTCAACTTTCTCGCTGGCACATCGCCCAGTGTCTAGCTCTGAAACCATTTGTAACAACTCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTTAAAACGAATCTGCTAGGGTGAGGTTTCCACACCTTTATAAAAAATGTTTTGTTCTACTTCCCAACTCCCCAACTGATATGGGATCTCACAACTCATTTGCTAACTTAATCTTTGCTTTCAAATCTATTTTCAAGATTGATTTTGTTAAAAAAAATATTTAAAATCTCGTCGGTGTTTTAAAAAAGGGAAGCTTTACAAGTTTCTCAAGAACAGATCGAAAGTCGTTGGATATTAAATCTCACTCCCATTTCAATTCCTGAAACGAGGAAGCAACCTGTTAAACCAAAGCTTCTCATTCATGCAGAGCTCTTGCTATGGCGCCGTTCGTCGACAGAGGATTGTCGTGGTTCACAGTCAAATACAACTTCAAGTCTCAGGGGAAGGTTACTAGAAACGAAACTTCTATACATTCATTGCGTTTTTTGTTTCATTTCATTGATGTTATGCTCAAAGTTAACCCATCTCCAGGCAGTTGTGGCGATTGTTGGATTCTGCTTAGGGTTGTCTCTCTTGTTATTCATTGCTGTTACTCTGCTTTCAGCATAAGACAGGTTCTTCCCTTGGGAAAGTAAGTACTTTTTTCTCTCACATCATTCATTACCCTATTCCCAATGAGTGTTTCCTTGTCCTCAATATTGAAGGCTATGACTTTTTTTCTTCCTTAAAATTAAAATTTCCAATATTTTAAGAGATAGGGTGCAGGTTTAACCAAAATTTTATCAATGAGATTGTCGTTATTGTCGAGAATATGTTACACG

mRNA sequence

TCTCTCTCTCTCTCTCTCTTTCAAATGCCAACTCCACTTAAGCTCACCAATGGCGCCATCCCTTGCGTCGTTTTCCCGGTGGCGGGTTCGAACGAATTGCAGCCGAAGACAATTTTCAGAGCTTCCCCGCCTTTTCGCGTCTCAAAGCCGAATAACATTTTTGTTAGTCGGAACCCTAGCATCCGACAATGCCTTAACAATGCCGAAATTAGCGCCAATGATCCATTGAAATCGGAAAGTGGCTTTTCCAATCATGAAACTGAAGGTTCGATGGAAAAGAATGAAAATCATAAAAAACATCCGCGAAAATCGATTGAGGTGCTGGATAAATTGAGGAGATATGGAGTTTCTGGAATATTGTCTTATGGATTGTTGAATACAGTCTACTATCTTACAACATTTCTTGTTGTGTGGTTCTACATTGCACCAGCACCTGCGAAAATGGGCTATGTTGCAGCTGCTGGAAGATTTCTCAAGATAATGGCTACAATCTGGGCTGGAAGCCAAGTTACTAAGCTGGCAAGAGCAGCAGGAGCTCTTGCTATGGCGCCGTTCGTCGACAGAGGATTGTCGTGGTTCACAGTCAAATACAACTTCAAGTCTCAGGGGAAGGCAGTTGTGGCGATTGTTGGATTCTGCTTAGGGTTGTCTCTCTTGTTATTCATTGCTGTTACTCTGCTTTCAGCATAAGACAGGTTCTTCCCTTGGGAAAGTAAGTACTTTTTTCTCTCACATCATTCATTACCCTATTCCCAATGAGTGTTTCCTTGTCCTCAATATTGAAGGCTATGACTTTTTTTCTTCCTTAAAATTAAAATTTCCAATATTTTAAGAGATAGGGTGCAGGTTTAACCAAAATTTTATCAATGAGATTGTCGTTATTGTCGAGAATATGTTACACG

Coding sequence (CDS)

ATGCCAACTCCACTTAAGCTCACCAATGGCGCCATCCCTTGCGTCGTTTTCCCGGTGGCGGGTTCGAACGAATTGCAGCCGAAGACAATTTTCAGAGCTTCCCCGCCTTTTCGCGTCTCAAAGCCGAATAACATTTTTGTTAGTCGGAACCCTAGCATCCGACAATGCCTTAACAATGCCGAAATTAGCGCCAATGATCCATTGAAATCGGAAAGTGGCTTTTCCAATCATGAAACTGAAGGTTCGATGGAAAAGAATGAAAATCATAAAAAACATCCGCGAAAATCGATTGAGGTGCTGGATAAATTGAGGAGATATGGAGTTTCTGGAATATTGTCTTATGGATTGTTGAATACAGTCTACTATCTTACAACATTTCTTGTTGTGTGGTTCTACATTGCACCAGCACCTGCGAAAATGGGCTATGTTGCAGCTGCTGGAAGATTTCTCAAGATAATGGCTACAATCTGGGCTGGAAGCCAAGTTACTAAGCTGGCAAGAGCAGCAGGAGCTCTTGCTATGGCGCCGTTCGTCGACAGAGGATTGTCGTGGTTCACAGTCAAATACAACTTCAAGTCTCAGGGGAAGGCAGTTGTGGCGATTGTTGGATTCTGCTTAGGGTTGTCTCTCTTGTTATTCATTGCTGTTACTCTGCTTTCAGCATAA

Protein sequence

MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNAEISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTVYYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDRGLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA

Homology

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BLAST of CmaCh04G012870 vs. ExPASy TrEMBL
Match: A0A6J1J0R3 (uncharacterized protein LOC111482401 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482401 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 1.9e-116
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
           GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA
Sbjct: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 221

[Close]

BLAST of CmaCh04G012870 vs. ExPASy TrEMBL
Match: A0A6J1GY06 (uncharacterized protein LOC111458238 OS=Cucurbita moschata OX=3662 GN=LOC111458238 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.4e-111
Identity = 212/221 (95.93%), Postives = 217/221 (98.19%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIF ASPPFRVSKP NIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFIASPPFRVSKPINIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENH+KHP+KSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHQKHPQKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAP PAKMGYVAAAGRFLKIMAT+WAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPPPAKMGYVAAAGRFLKIMATVWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
            LSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA
Sbjct: 181 ALSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 221

[Close]

BLAST of CmaCh04G012870 vs. ExPASy TrEMBL
Match: A0A6J1J900 (uncharacterized protein LOC111482401 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482401 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.5e-105
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGK 197
           GLSWFTVKYNFKSQGK
Sbjct: 181 GLSWFTVKYNFKSQGK 196

[Close]

BLAST of CmaCh04G012870 vs. ExPASy TrEMBL
Match: A0A5A7SW01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00960 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 5.4e-79
Identity = 169/222 (76.13%), Postives = 179/222 (80.63%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPP-FRVSKPNNIFVSRNPSIRQCLNN 60
           M TP KLTNG IPCV FP   S ELQ K+I RASPP     +PN                
Sbjct: 1   MLTPPKLTNGNIPCVAFP--DSIELQSKSISRASPPVLSPPEPN---------------- 60

Query: 61  AEISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNT 120
               ANDPLKSE  FSNHETEGSMEKNEN +KHP+KS EVLDKLRRYG+SGILSYGLLNT
Sbjct: 61  ---KANDPLKSEDDFSNHETEGSMEKNENRQKHPQKSNEVLDKLRRYGLSGILSYGLLNT 120

Query: 121 VYYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVD 180
            YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMAT+WAGSQVTKLARAAGALA+APFVD
Sbjct: 121 AYYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATVWAGSQVTKLARAAGALALAPFVD 180

Query: 181 RGLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
           RGLSWFTV YNF+SQGKA +AIVGFCLGL+LLLFI VTLLSA
Sbjct: 181 RGLSWFTVNYNFESQGKAFMAIVGFCLGLALLLFIVVTLLSA 201

[Close]

BLAST of CmaCh04G012870 vs. ExPASy TrEMBL
Match: A0A1S3BDD7 (uncharacterized protein LOC103488806 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103488806 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.1e-78
Identity = 159/189 (84.13%), Postives = 171/189 (90.48%), Query Frame = 0


Query: 36  PFRVSKPNN---IFVSRNPSIRQCLNNAEISANDPLKSESGFSNHETEGSMEKNENHKKH 95
           P R S P +     VSRNPS+R CL+NA+ISANDPLKSE  FSNHETEGSMEKNEN +KH
Sbjct: 24  PRRFSPPQSRIRFSVSRNPSVRLCLSNAKISANDPLKSEDDFSNHETEGSMEKNENRQKH 83

Query: 96  PRKSIEVLDKLRRYGVSGILSYGLLNTVYYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKI 155
           P+KS EVLDKLRRYG+SGILSYGLLNT YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKI
Sbjct: 84  PQKSNEVLDKLRRYGLSGILSYGLLNTAYYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKI 143

Query: 156 MATIWAGSQVTKLARAAGALAMAPFVDRGLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLL 215
           MAT+WAGSQVTKLARAAGALA+APFVDRGLSWFTV YNF+SQGKA +AIVGFCLGL+LLL
Sbjct: 144 MATVWAGSQVTKLARAAGALALAPFVDRGLSWFTVNYNFESQGKAFMAIVGFCLGLALLL 203

Query: 216 FIAVTLLSA 222
           FI VTLLSA
Sbjct: 204 FIVVTLLSA 212

[Close]

BLAST of CmaCh04G012870 vs. NCBI nr
Match: XP_022983937.1 (uncharacterized protein LOC111482401 isoform X2 [Cucurbita maxima])

HSP 1 Score: 428.3 bits (1100), Expect = 3.9e-116
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
           GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA
Sbjct: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 221

[Close]

BLAST of CmaCh04G012870 vs. NCBI nr
Match: XP_023534257.1 (uncharacterized protein LOC111795864 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.3e-114
Identity = 217/221 (98.19%), Postives = 220/221 (99.55%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAP PAKMGYVAAAGRFLKIMAT+WAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPPPAKMGYVAAAGRFLKIMATVWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
           GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA
Sbjct: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 221

[Close]

BLAST of CmaCh04G012870 vs. NCBI nr
Match: KAG6601085.1 (hypothetical protein SDJN03_06318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414.8 bits (1065), Expect = 4.5e-112
Identity = 213/221 (96.38%), Postives = 219/221 (99.10%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIFRASPPFRVSKP NIFVSRNPSIRQCL+NA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFRASPPFRVSKPINIFVSRNPSIRQCLDNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENH+KHP+KSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHQKHPQKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAP PAKMGYVAAAGRFLKIMAT+WAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPPPAKMGYVAAAGRFLKIMATVWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
           GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA
Sbjct: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 221

[Close]

BLAST of CmaCh04G012870 vs. NCBI nr
Match: XP_022956520.1 (uncharacterized protein LOC111458238 [Cucurbita moschata])

HSP 1 Score: 411.4 bits (1056), Expect = 5.0e-111
Identity = 212/221 (95.93%), Postives = 217/221 (98.19%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSN+LQPKTIF ASPPFRVSKP NIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNKLQPKTIFIASPPFRVSKPINIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSE+GFSNHETEGSMEKNENH+KHP+KSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSENGFSNHETEGSMEKNENHQKHPQKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAP PAKMGYVAAAGRFLKIMAT+WAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPPPAKMGYVAAAGRFLKIMATVWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
            LSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA
Sbjct: 181 ALSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 221

[Close]

BLAST of CmaCh04G012870 vs. NCBI nr
Match: XP_022983929.1 (uncharacterized protein LOC111482401 isoform X1 [Cucurbita maxima])

HSP 1 Score: 389.8 bits (1000), Expect = 1.6e-104
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60
           MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA
Sbjct: 1   MPTPLKLTNGAIPCVVFPVAGSNELQPKTIFRASPPFRVSKPNNIFVSRNPSIRQCLNNA 60

Query: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120
           EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV
Sbjct: 61  EISANDPLKSESGFSNHETEGSMEKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 120

Query: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180
           YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR
Sbjct: 121 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 180

Query: 181 GLSWFTVKYNFKSQGK 197
           GLSWFTVKYNFKSQGK
Sbjct: 181 GLSWFTVKYNFKSQGK 196

[Close]

BLAST of CmaCh04G012870 vs. TAIR 10
Match: AT2G38695.1 (unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-49
Identity = 106/161 (65.84%), Postives = 126/161 (78.26%), Query Frame = 0


Query: 62  ISANDPLKSESGFSNHETEGSM-EKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 121
           +S N   KS++       EG M +KN   KK+P  S E+L KL+RYG+SGILSYGLLNTV
Sbjct: 52  LSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTV 111

Query: 122 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAGALAMAPFVDR 181
           YY T FL+VWFY+APAP KMGY+AAA RFLK+MA +WAGSQVTKL R  GA+A+AP VDR
Sbjct: 112 YYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAMVWAGSQVTKLIRIGGAVALAPIVDR 171

Query: 182 GLSWFTVKYNFKSQGKAVVAIVGFCLGLSLLLFIAVTLLSA 222
           GLSWFTVK NF+SQGKA  A+VG CLG++L+LFI VTLL A
Sbjct: 172 GLSWFTVKCNFESQGKAFGALVGICLGMALMLFIVVTLLWA 212

[Close]

BLAST of CmaCh04G012870 vs. TAIR 10
Match: AT2G38695.3 (unknown protein; Has 56 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 170.6 bits (431), Expect = 1.4e-42
Identity = 106/209 (50.72%), Postives = 126/209 (60.29%), Query Frame = 0


Query: 62  ISANDPLKSESGFSNHETEGSM-EKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 121
           +S N   KS++       EG M +KN   KK+P  S E+L KL+RYG+SGILSYGLLNTV
Sbjct: 52  LSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTV 111

Query: 122 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAG---------- 181
           YY T FL+VWFY+APAP KMGY+AAA RFLK+MA +WAGSQVTKL R  G          
Sbjct: 112 YYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAMVWAGSQVTKLIRIGGEHVKFLGDKH 171

Query: 182 --------------------------------------ALAMAPFVDRGLSWFTVKYNFK 222
                                                 A+A+AP VDRGLSWFTVK NF+
Sbjct: 172 SRWMQDSRTCTCICSFDCYCRPYLVVMLLPMKNVDGCRAVALAPIVDRGLSWFTVKCNFE 231

[Close]

BLAST of CmaCh04G012870 vs. TAIR 10
Match: AT2G38695.2 (unknown protein; Has 54 Blast hits to 54 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 8.7e-29
Identity = 69/110 (62.73%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 62  ISANDPLKSESGFSNHETEGSM-EKNENHKKHPRKSIEVLDKLRRYGVSGILSYGLLNTV 121
           +S N   KS++       EG M +KN   KK+P  S E+L KL+RYG+SGILSYGLLNTV
Sbjct: 52  LSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTV 111

Query: 122 YYLTTFLVVWFYIAPAPAKMGYVAAAGRFLKIMATIWAGSQVTKLARAAG 171
           YY T FL+VWFY+APAP KMGY+AAA RFLK+MA +WAGSQVTKL R  G
Sbjct: 112 YYSTAFLLVWFYVAPAPGKMGYLAAAERFLKVMAMVWAGSQVTKLIRIGG 161

The following BLAST results are available for this feature:

BLAST of CmaCh04G012870 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G012870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0R3	1.9e-116	100.00	uncharacterized protein LOC111482401 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GY06	2.4e-111	95.93	uncharacterized protein LOC111458238 OS=Cucurbita moschata OX=3662 GN=LOC1114582...	[more]
A0A6J1J900	7.5e-105	100.00	uncharacterized protein LOC111482401 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7SW01	5.4e-79	76.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BDD7	2.1e-78	84.13	uncharacterized protein LOC103488806 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmaCh04G012870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983937.1	3.9e-116	100.00	uncharacterized protein LOC111482401 isoform X2 [Cucurbita maxima]	[more]
XP_023534257.1	1.3e-114	98.19	uncharacterized protein LOC111795864 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6601085.1	4.5e-112	96.38	hypothetical protein SDJN03_06318, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022956520.1	5.0e-111	95.93	uncharacterized protein LOC111458238 [Cucurbita moschata]	[more]
XP_022983929.1	1.6e-104	100.00	uncharacterized protein LOC111482401 isoform X1 [Cucurbita maxima]	[more]

BLAST of CmaCh04G012870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38695.1	2.0e-49	65.84	unknown protein; Has 65 Blast hits to 65 proteins in 18 species: Archae - 0; Bac...	[more]
AT2G38695.3	1.4e-42	50.72	unknown protein; Has 56 Blast hits to 54 proteins in 13 species: Archae - 0; Bac...	[more]
AT2G38695.2	8.7e-29	62.73	unknown protein; Has 54 Blast hits to 54 proteins in 13 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..93
None	No IPR available	PANTHER	PTHR34370	OS04G0600100 PROTEIN	coord: 30..221
None	No IPR available	PANTHER	PTHR34370:SF2	GAG-POL POLYPROTEIN/RETROTRANSPOSON	coord: 30..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G012870.1	CmaCh04G012870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane