CmaCh04G012770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G012770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF3531)
LocationCma_Chr04: 6520952 .. 6523024 (+)
RNA-Seq ExpressionCmaCh04G012770
SyntenyCmaCh04G012770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATCTTATTGGCAGTGTATGTTAGTTCTTATTGCCTTAGAATGATTTTCCCTATCAATTATTATTTTCCTTGAGCTGCTTAACCTTTATAATGATCATCTTCTATTTTCCCCCATTCTCTTGCATCCATGAACGACTTTTAACTTGTAGCCTATATTACTTACATTACAAGTAAACATGCAGGTTAACCAGTCGTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTGTAGGTTCTTCATACACCTTTGAACCTAATTGATTTATACTTCGTTAAAGTGCCTTACCTTAATTATTTGAAGTCAATAACATGTTTCTTTTCACCTCTTACGCAAATACAAATTAATTCTTCAGTTATTTTCTTTACTTGTGTATTGGAAAGAGGGAAGGTCTTGGCCAGTTTTTCAATACTTCTACGTATGATATTTTGTCTTGTGGGGCTAATATTTACATGATGAACGTACTGCATAACTACTTAATTATCTTGTTAGCTTTATATGGTTGAAAGTAGGCACCCTAGTTTGGAGGTACTCTGGATCACAGGCTCAGACTATTGTAAAACTGAAATTTGGTCAATGTTAAAAACGCTTCCTTTTATTTTGCGCAAAGGAAAAACACGTTCAATTGCAAATTGATTTGGTTTATTCGAAGGCTGTTTAAATATCCTAGAAACATTATATTCTCTCCATTTTTTTGGCTGATTCCCAAAAGATAGGGACTGCAAAACCAACCCGGTTAGGTGGTCAGTCTCTAACACCTTTTCTTAATGACTTAATGGAACCAAATCTATGGCTGCTGCGTGAATTGCAAAATTTTTGGATTAAATTTTTTCATTGAATTGTTACTCAAACTCAAACAACAAAAAATTGCAGCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCAACCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCTGGTTTGGTACGACTCTTGAAATTAACTGTGTTCCATTATTCGACGTTAATTTGCATGCTTCTCTGCATGGAATTCAAACAAGTTGTGATAATTTATGGCAGGGTTGACCTAGGTACGTCTGATTATTTCGCCATTGATGTACTATTGAACTGCTGGACTGTTCTGAGCTCATAGTAGGTACTCATCCTATCTAATTGAGGAACTTGTTATTTTTTACTTTGACATGCAGATATTTAGCTATCCAATAAGTCATCTTTGGAGGACGTCGAATGAGCAATTGGGAAGAAGGGGTGATAAGCCCCGAGAATGGTACGAGTATTTCAAAATCTTTCTTCTTTAGAATCTTGGTGTATTTAATGCCTCCTCGATATCCTAAATCTTCATCTTTATTTAAACTTCCGCCAGACTAGTAGGAAGATTTTAGGCTTAGATCAGGTAGTTTGAGAATTTGCATTCAGAAAATCAAAAAATGGCCCACACGCTTTCCTTTAAGAAAGGTAATAACAATTAGACATGAGAATCGTGGAGGGAGGATTGAACCAAAAAAAGTAGCCCAGCAAGTAATGTCTTAGCTAAGTTAAGTTGTGAAAATCTTCGTTCTTATGCCCACCTCAATTTGTTAGGGAAAAAAAATGTCCCACAGCCATAGTTAAAATATATATATCATCCATAGGGAGGTTAAAGGCTTAAATTCTCATCCATATGTTTCATTAAATTAAAATGTCTTACCGGAAAAGAGAAAGAACCCAAGGTTAAAGGTAATTGGCCTTCCTCTGTTGGATCAAGGATTTCTATGTTGTAAAATTGGGACTTTCATTCTAAAACAAAAACGATTAGAGGCCCTCATGGTCATGAGAATCCTTGAACAGGACGGTCTGTGAATTTTATTGCTAGTTTTTTAGTATAATAAATGGGATAAAGAGGATTTAAACATATGCATCATGCTTATCACTCCATTATATTATTCTTCTGGCCCCCAGCCCCAAAAAAGTTGTTTCAGTACAGGTCAGGGTATCAAATAGCAAAACATATTATAAGTAGATTTAATTATTGTATTGATTTAGTCCCC

mRNA sequence

ATGTTGATCTTATTGGCAGTGTTAACCAGTCGTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCAACCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCTGGTTTGGGTTGACCTAGATATTTAGCTATCCAATAAGTCATCTTTGGAGGACGTCGAATGAGCAATTGGGAAGAAGGGGTGATAAGCCCCGAGAATGGTACGAGTATTTCAAAATCTTTCTTCTTTAGAATCTTGGTGTATTTAATGCCTCCTCGATATCCTAAATCTTCATCTTTATTTAAACTTCCGCCAGACTAGTAGGAAGATTTTAGGCTTAGATCAGGTAGTTTGAGAATTTGCATTCAGAAAATCAAAAAATGGCCCACACGCTTTCCTTTAAGAAAGGTAATAACAATTAGACATGAGAATCGTGGAGGGAGGATTGAACCAAAAAAAGTAGCCCAGCAAGTAATGTCTTAGCTAAGTTAAGTTGTGAAAATCTTCGTTCTTATGCCCACCTCAATTTGTTAGGGAAAAAAAATGTCCCACAGCCATAGTTAAAATATATATATCATCCATAGGGAGGTTAAAGGCTTAAATTCTCATCCATATGTTTCATTAAATTAAAATGTCTTACCGGAAAAGAGAAAGAACCCAAGGTTAAAGGTAATTGGCCTTCCTCTGTTGGATCAAGGATTTCTATGTTGTAAAATTGGGACTTTCATTCTAAAACAAAAACGATTAGAGGCCCTCATGGTCATGAGAATCCTTGAACAGGACGGTCTGTGAATTTTATTGCTAGTTTTTTAGTATAATAAATGGGATAAAGAGGATTTAAACATATGCATCATGCTTATCACTCCATTATATTATTCTTCTGGCCCCCAGCCCCAAAAAAGTTGTTTCAGTACAGGTCAGGGTATCAAATAGCAAAACATATTATAAGTAGATTTAATTATTGTATTGATTTAGTCCCC

Coding sequence (CDS)

ATGTTGATCTTATTGGCAGTGTTAACCAGTCGTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCAACCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCTGGTTTGGGTTGACCTAGATATTTAG

Protein sequence

MLILLAVLTSRGMSLVDWRTFNSSNFWRIQPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDLDI
Homology
[Close]
BLAST of CmaCh04G012770 vs. ExPASy TrEMBL
Match: A0A1J7I464 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_31170 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.9e-10
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 21  FNSSNFWRIQPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN          PLY+ADKGF+VM  SFHDISDVEFQDNWG +WVDL
Sbjct: 184 FNSSNLQLGSSSMEHPLYDADKGFKVMPSSFHDISDVEFQDNWGRIWVDL 233

[Close]
BLAST of CmaCh04G012770 vs. ExPASy TrEMBL
Match: A0A5A7STY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003260 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 21  FNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           P+Y+ADKGF+VMQ SFHDISDVEFQDNWG VWVDL
Sbjct: 214 FNSSNLQLANSSMEYNPVYDADKGFKVMQSSFHDISDVEFQDNWGRVWVDL 264

[Close]
BLAST of CmaCh04G012770 vs. ExPASy TrEMBL
Match: A0A1S3BDB3 (uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.7e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 21  FNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           P+Y+ADKGF+VMQ SFHDISDVEFQDNWG VWVDL
Sbjct: 206 FNSSNLQLANSSMEYNPVYDADKGFKVMQSSFHDISDVEFQDNWGRVWVDL 256

[Close]
BLAST of CmaCh04G012770 vs. ExPASy TrEMBL
Match: A0A1U8BEU5 (uncharacterized protein LOC104610134 OS=Nelumbo nucifera OX=4432 GN=LOC104610134 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 21  FNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN       +   PLY+ADKGF+VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 220 FNSSNLQLANSSFEYNPLYDADKGFKVMPSSFHDISDVEFQDNWGRVWVDL 270

[Close]
BLAST of CmaCh04G012770 vs. ExPASy TrEMBL
Match: A0A5D2DG98 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D02G236500v1 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 37/54 (68.52%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 21  FNSSNFWRIQPWSAI----PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN   +Q  +A     PLY+ADKGF VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 212 FNSSN---LQVGNASMEYDPLYDADKGFNVMPSSFHDISDVEFQDNWGRVWVDL 262

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: XP_019450058.1 (PREDICTED: uncharacterized protein LOC109352505 [Lupinus angustifolius] >OIW07611.1 hypothetical protein TanjilG_31170 [Lupinus angustifolius])

HSP 1 Score: 73.6 bits (179), Expect = 8.0e-10
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0 

Query: 21  FNSSNFWRIQPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN          PLY+ADKGF+VM  SFHDISDVEFQDNWG +WVDL
Sbjct: 184 FNSSNLQLGSSSMEHPLYDADKGFKVMPSSFHDISDVEFQDNWGRIWVDL 233

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: XP_029124704.1 (uncharacterized protein LOC109818537 isoform X3 [Cajanus cajan] >XP_029124705.1 uncharacterized protein LOC109818537 isoform X3 [Cajanus cajan])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 34/52 (65.38%), Postives = 38/52 (73.08%), Query Frame = 0 

Query: 21  FNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDLD 72
           FNSSN           PLY+ADKGF+VM  SFHDISD+EFQDNWG VW+DLD
Sbjct: 186 FNSSNLQLANSSMEYDPLYDADKGFKVMPSSFHDISDIEFQDNWGRVWIDLD 237

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: KAF9606299.1 (hypothetical protein IFM89_024967 [Coptis chinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 41/73 (56.16%), Postives = 46/73 (63.01%), Query Frame = 0 

Query: 2  LILLAVLTS---RGMSLVDWRTFNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDV 61
          L+L   +TS    GMS V    FNSSN           P+Y+ADKGF+VM  SFHDI DV
Sbjct: 26 LVLAFKVTSVIHHGMSWVALGAFNSSNLQLANSSMEHNPIYDADKGFKVMPSSFHDIGDV 85

Query: 62 EFQDNWGLVWVDL 71
          EFQDNWG VWVDL
Sbjct: 86 EFQDNWGRVWVDL 98

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: XP_038893156.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120082019 [Benincasa hispida])

HSP 1 Score: 72.8 bits (177), Expect = 1.4e-09
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 21  FNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           P+Y+ADKGF+VMQ SFHDISDVEFQDNWG VWVDL
Sbjct: 220 FNSSNLQLANSSMEYNPIYDADKGFKVMQSSFHDISDVEFQDNWGRVWVDL 270

[Close]
BLAST of CmaCh04G012770 vs. NCBI nr
Match: XP_008445913.1 (PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 21  FNSSNFWRI-QPWSAIPLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           FNSSN           P+Y+ADKGF+VMQ SFHDISDVEFQDNWG VWVDL
Sbjct: 206 FNSSNLQLANSSMEYNPVYDADKGFKVMQSSFHDISDVEFQDNWGRVWVDL 256

[Close]
BLAST of CmaCh04G012770 vs. TAIR 10
Match: AT5G08400.1 (Protein of unknown function (DUF3531) )

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 36  PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           PLY+A+KGF+VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 245 PLYDAEKGFKVMPSSFHDISDVEFQDNWGRVWVDL 279

[Close]
BLAST of CmaCh04G012770 vs. TAIR 10
Match: AT5G08400.2 (Protein of unknown function (DUF3531) )

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 0 

Query: 36  PLYNADKGFEVMQPSFHDISDVEFQDNWGLVWVDL 71
           PLY+A+KGF+VM  SFHDISDVEFQDNWG VWVDL
Sbjct: 212 PLYDAEKGFKVMPSSFHDISDVEFQDNWGRVWVDL 246

The following BLAST results are available for this feature:
BLAST of CmaCh04G012770 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1J7I4643.9e-1068.00Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_31170 PE=4 S... [more]
A0A5A7STY88.7e-1068.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BDB38.7e-1068.63uncharacterized protein LOC103488796 OS=Cucumis melo OX=3656 GN=LOC103488796 PE=... [more]
A0A1U8BEU51.1e-0968.63uncharacterized protein LOC104610134 OS=Nelumbo nucifera OX=4432 GN=LOC104610134... [more]
A0A5D2DG981.5e-0968.52Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D02G236500v1 PE=... [more]
BLAST of CmaCh04G012770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_019450058.18.0e-1068.00PREDICTED: uncharacterized protein LOC109352505 [Lupinus angustifolius] >OIW0761... [more]
XP_029124704.11.4e-0965.38uncharacterized protein LOC109818537 isoform X3 [Cajanus cajan] >XP_029124705.1 ... [more]
KAF9606299.11.4e-0956.16hypothetical protein IFM89_024967 [Coptis chinensis][more]
XP_038893156.11.4e-0968.63LOW QUALITY PROTEIN: uncharacterized protein LOC120082019 [Benincasa hispida][more]
XP_008445913.11.8e-0968.63PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo][more]
BLAST of CmaCh04G012770 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08400.12.4e-1282.86Protein of unknown function (DUF3531) [more]
AT5G08400.22.4e-1282.86Protein of unknown function (DUF3531) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021920Protein of unknown function DUF3531PFAMPF12049DUF3531coord: 35..70
e-value: 4.4E-7
score: 29.9
NoneNo IPR availablePANTHERPTHR46737:SF4BNAANNG06110D PROTEINcoord: 20..70
NoneNo IPR availablePANTHERPTHR46737OS02G0827600 PROTEINcoord: 20..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012770.1CmaCh04G012770.1mRNA