CmaCh04G012400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G012400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	Cma_Chr04: 6356430 .. 6358184 (+)
RNA-Seq Expression	CmaCh04G012400
Synteny	CmaCh04G012400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTCTTCTCCCTTCTCCCTTCTCCCTTCTTATATAACCTTCTTCTTCTCTTCCCCACCACCATTTTCTCCCTCCTTCGCTTAATCACCACGCATTCTTCAGCCATGTTTGGGGATACCACTTTGACCAAGGTGTTCGTTGGGGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGTGACATTCTCGAGGCGGTTATCATCACCGATAAACTCACCGGCAGATCCAAGGGCTACGGATTCGTAAGTCTGAAGGATTGATTTTTGGCTTCATTGATGATTCTCGAGTTTGTTTTTGATGTTTTTCATGTTTTTGATGTTTTCGATTTTAGGTCACGTTCAAGGACGCAGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCCAACTGTAATCTGGCTTCCCTTGGCGCTCGGAGATCCTCAAGGTCGGCTTCGGCTACTCCTCCGCAAGGTCCTCAACCAGGTTAACACTCTCTTCTCCTCTTCTCTCGAAGAAACTGGTCAATTCAGTATTTGTGTATGGCATTTTCGTAATTATGTTGAGGAGGATCTGAATATGGTTTGTGATTCCTTGAAGGATCGAACGGTGGTGCGCCGAGGACGACGTCAGCGGCTGCGGGAAACCACGTGCAGTGGTACTACCCAGCGGGGACTCATCCGACGGCGTTTCATCATCAGCCTCATCAGGCCGTCCCTTTCTATGGGTATACCTCAACATCCTATACACTCTTCCGTACTTTATCATTGCCCAGGGATTCTTTAGTATTATTTTTGGTATTTTCTTGTAAATCAACGTAAATTTCGTTTTCTTACAGATACTCCCCGAGCCCCACCACCTACATCGCCACCGATATCAGTTACAACCATGTCAGTTATTTATTTATTTAAATTAATAAATCAATTATTTCTTAAATATTTTTAAATTTATTAGACATTAAATAATGATTTTTTTTTTTTTTAATTTTTTGGTGATGAACAGCAGAAGGTGGGGTATATGAACGGCGGGCCTTACGCGCAGATATATCCGGGGCAGGCCATGGTAGGGGCGAACACCTTGATGCCGATGTACCCGGTGTATCATTACCATCAATCACAGGCGATGGGGATGCCGGCACACATATTCCCGCCAAGTCCGACGGCGGCTGGGCCATTTGCGGCGGTTCCACCCACTTCCATTATGTCCAAACCGGCATCCGTTGGCCCCAACCCAGGTCCGTTTTCTCTTCAATTTCTGTGTTGAGTTATTGCGTTTTGTTGGGATGATGGAGATGAATAGAATTACTGCTGCTGTCCTTGGCCCATTGTTTTGCCTTTTGCATGATGTCCAGAAGAACACGGATTTTGGTCAATGGTCAAACGTTATTAACAAGAAAAGAAAAAGAAAAAGAAAACAGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACGTGAAAGGGTAGTTTTAGTAAAAGGGTCTGTCCACCCCCTCTGTCAACTTGCTTTCCTCGGACCCACGTGCAATTATCAAATTAACTCAAGTTAACTAATTAATGGGTTGATCATGAATTTGCTAAATAAGAAATACAGTACTCATGCTCAAAATAGACAATATAGCATCATCATTATACTGATATTACAAACAACAGTTTGCTTGGTTGTGGAATAA

mRNA sequence

GCAATTGCCTATCTGTCAGCCTCTCTGTCTCTCTGTCTTCTTCCATTTCTTTATTTCCATACCACTCTGTTCTTCTCCCTTCTCCCTTCTCCCTTCTTATATAACCTTCTTCTTCTCTTCCCCACCACCATTTTCTCCCTCCTTCGCTTAATCACCACGCATTCTTCAGCCATGTTTGGGGATACCACTTTGACCAAGGTGTTCGTTGGGGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGTGACATTCTCGAGGCGGTTATCATCACCGATAAACTCACCGGCAGATCCAAGGGCTACGGATTCGTCACGTTCAAGGACGCAGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCCAACTGTAATCTGGCTTCCCTTGGCGCTCGGAGATCCTCAAGGTCGGCTTCGGCTACTCCTCCGCAAGGTCCTCAACCAGGATCGAACGGTGGTGCGCCGAGGACGACGTCAGCGGCTGCGGGAAACCACGTGCAGTGGTACTACCCAGCGGGGACTCATCCGACGGCGTTTCATCATCAGCCTCATCAGGCCGTCCCTTTCTATGGATACTCCCCGAGCCCCACCACCTACATCGCCACCGATATCAGTTACAACCATCAGAAGGTGGGGTATATGAACGGCGGGCCTTACGCGCAGATATATCCGGGGCAGGCCATGGTAGGGGCGAACACCTTGATGCCGATGTACCCGGTGTATCATTACCATCAATCACAGGCGATGGGGATGCCGGCACACATATTCCCGCCAAGTCCGACGGCGGCTGGGCCATTTGCGGCGGTTCCACCCACTTCCATTATGTCCAAACCGGCATCCGTTGGCCCCAACCCAGTTTGCTTGGTTGTGGAATAA

Coding sequence (CDS)

ATGTTTGGGGATACCACTTTGACCAAGGTGTTCGTTGGGGGCTTGGCTTGGGAGACTCCCAAGGAAGCCATGAGAGATCACTTCGAGAAGTTCGGTGACATTCTCGAGGCGGTTATCATCACCGATAAACTCACCGGCAGATCCAAGGGCTACGGATTCGTCACGTTCAAGGACGCAGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCCAACTGTAATCTGGCTTCCCTTGGCGCTCGGAGATCCTCAAGGTCGGCTTCGGCTACTCCTCCGCAAGGTCCTCAACCAGGATCGAACGGTGGTGCGCCGAGGACGACGTCAGCGGCTGCGGGAAACCACGTGCAGTGGTACTACCCAGCGGGGACTCATCCGACGGCGTTTCATCATCAGCCTCATCAGGCCGTCCCTTTCTATGGATACTCCCCGAGCCCCACCACCTACATCGCCACCGATATCAGTTACAACCATCAGAAGGTGGGGTATATGAACGGCGGGCCTTACGCGCAGATATATCCGGGGCAGGCCATGGTAGGGGCGAACACCTTGATGCCGATGTACCCGGTGTATCATTACCATCAATCACAGGCGATGGGGATGCCGGCACACATATTCCCGCCAAGTCCGACGGCGGCTGGGCCATTTGCGGCGGTTCCACCCACTTCCATTATGTCCAAACCGGCATCCGTTGGCCCCAACCCAGTTTGCTTGGTTGTGGAATAA

Protein sequence

MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGNHVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYPGQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPNPVCLVVE

Homology

[Close]

BLAST of CmaCh04G012400 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.3e-59
Identity = 136/252 (53.97%), Postives = 163/252 (64.68%), Query Frame = 0


Query: 2   FGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAES 61
           FGDT LTKVFVGGLAW+T KEAM DHF K+GDILEAVII+DKLT RSKGYGFVTFKDA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 62  AKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGNH 121
           A +ACEDS PIINGRRANCNLASLG R        +P QGP+ G+     R T    GNH
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGN-----RATPPHVGNH 130

Query: 122 VQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNG----GPYAQ 181
            QWYYP+G        Q HQAVPFYGY   P+ Y+A ++++N QKVGY+ G    G YAQ
Sbjct: 131 SQWYYPSGFTNQQHQQQNHQAVPFYGY---PSAYVAPNMTFN-QKVGYVGGTYMNGYYAQ 190

Query: 182 IYP------------------GQAMVG-ANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTA 230
           + P                  G+ MVG A+ ++P Y VY YHQSQA+G       P P+ 
Sbjct: 191 MQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSF 247

[Close]

BLAST of CmaCh04G012400 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-23
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 4  DTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESAK 63
          DTT TK+FVGGL + T   ++R +FE FGDI EAV+ITD+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 64 KACEDSAPIINGRRANCNLASLGARRSS 92
          +AC+D  PII+GR+AN NLA LGA+  S
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRS 94

[Close]

BLAST of CmaCh04G012400 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 4  DTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESAK 63
          DTT TK+FVGGL + T   ++R +FE FGDI EAV+ITD+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 64 KACEDSAPIINGRRANCNLASLGAR 89
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G012400 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.7e-23
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 4  DTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESAK 63
          DTT TK+FVGGL + T   ++R +FE FGDI EAV+ITD+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 64 KACEDSAPIINGRRANCNLASLGAR 89
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G012400 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.5e-23
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 4  DTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESAK 63
          DTT TK+FVGGL + T   ++R +FE FGDI EAV+ITD+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 64 KACEDSAPIINGRRANCNLASLGAR 89
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1KFD3 (probable RNA-binding protein ARP1 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111493786 PE=4 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 3.1e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 247

[Close]

BLAST of CmaCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1KH37 (probable RNA-binding protein ARP1 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111493786 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 2.9e-137
Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNH KVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNH-KVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 246

[Close]

BLAST of CmaCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1GZW6 (probable RNA-binding protein ARP1 isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111458665 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.4e-136
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFK+AE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKEAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSP TYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSP-TYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFA VPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAGVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 246

[Close]

BLAST of CmaCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1KFF3 (probable RNA-binding protein ARP1 isoform X6 OS=Cucurbita maxima OX=3661 GN=LOC111493786 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.1e-136
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 P 242
           P
Sbjct: 241 P 241

[Close]

BLAST of CmaCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1KCZ0 (probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493786 PE=4 SV=1)

HSP 1 Score: 493.0 bits (1268), Expect = 7.1e-136
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 P 242
           P
Sbjct: 241 P 241

[Close]

BLAST of CmaCh04G012400 vs. NCBI nr
Match: XP_022999430.1 (probable RNA-binding protein ARP1 isoform X4 [Cucurbita maxima])

HSP 1 Score: 504.2 bits (1297), Expect = 6.3e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 247

[Close]

BLAST of CmaCh04G012400 vs. NCBI nr
Match: XP_023532900.1 (probable RNA-binding protein ARP1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 499.2 bits (1284), Expect = 2.0e-137
Identity = 245/247 (99.19%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTT TKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTFTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAA PFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAVPFAAVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 247

[Close]

BLAST of CmaCh04G012400 vs. NCBI nr
Match: XP_022999439.1 (probable RNA-binding protein ARP1 isoform X5 [Cucurbita maxima])

HSP 1 Score: 497.7 bits (1280), Expect = 5.9e-137
Identity = 246/247 (99.60%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNH KVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNH-KVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 246

[Close]

BLAST of CmaCh04G012400 vs. NCBI nr
Match: XP_022957205.1 (probable RNA-binding protein ARP1 isoform X5 [Cucurbita moschata])

HSP 1 Score: 494.6 bits (1272), Expect = 5.0e-136
Identity = 244/247 (98.79%), Postives = 245/247 (99.19%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFK+AE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKEAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSP TYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSP-TYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFA VPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAGVPPTSIMSKPASVGPN 240

Query: 241 PVCLVVE 248
           PVCLVVE
Sbjct: 241 PVCLVVE 246

[Close]

BLAST of CmaCh04G012400 vs. NCBI nr
Match: XP_022999423.1 (probable RNA-binding protein ARP1 isoform X3 [Cucurbita maxima])

HSP 1 Score: 493.0 bits (1268), Expect = 1.5e-135
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60
           MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE
Sbjct: 1   MFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAE 60

Query: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120
           SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN
Sbjct: 61  SAKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGN 120

Query: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180
           HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP
Sbjct: 121 HVQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIYP 180

Query: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240
           GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN
Sbjct: 181 GQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPASVGPN 240

Query: 241 P 242
           P
Sbjct: 241 P 241

[Close]

BLAST of CmaCh04G012400 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-60
Identity = 136/252 (53.97%), Postives = 163/252 (64.68%), Query Frame = 0


Query: 2   FGDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAES 61
           FGDT LTKVFVGGLAW+T KEAM DHF K+GDILEAVII+DKLT RSKGYGFVTFKDA++
Sbjct: 11  FGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKA 70

Query: 62  AKKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGNH 121
           A +ACEDS PIINGRRANCNLASLG R        +P QGP+ G+     R T    GNH
Sbjct: 71  ATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGN-----RATPPHVGNH 130

Query: 122 VQWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNG----GPYAQ 181
            QWYYP+G        Q HQAVPFYGY   P+ Y+A ++++N QKVGY+ G    G YAQ
Sbjct: 131 SQWYYPSGFTNQQHQQQNHQAVPFYGY---PSAYVAPNMTFN-QKVGYVGGTYMNGYYAQ 190

Query: 182 IYP------------------GQAMVG-ANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTA 230
           + P                  G+ MVG A+ ++P Y VY YHQSQA+G       P P+ 
Sbjct: 191 MQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSF 247

[Close]

BLAST of CmaCh04G012400 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-45
Identity = 115/231 (49.78%), Postives = 138/231 (59.74%), Query Frame = 0


Query: 24  MRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 83
           M DHF K+GDILEAVII+DKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 84  SLGAR-RSSRSASATPPQGPQPGSNGGAPRTTSAAAGNHVQWYYPAGTHPTAFHHQPHQA 143
           SLG R R      ATPP                   GNH QWYYP+G        Q HQA
Sbjct: 61  SLGGRLRPKNGNRATPPH-----------------VGNHSQWYYPSGFTNQQHQQQNHQA 120

Query: 144 VPFYGYSPSPTTYIATDISYNHQKVGYMNG----GPYAQIYP------------------ 203
           VPFYGY   P+ Y+A ++++N QKVGY+ G    G YAQ+ P                  
Sbjct: 121 VPFYGY---PSAYVAPNMTFN-QKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGG 180

Query: 204 GQAMVG-ANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFA-AVPPTS 230
           G+ MVG A+ ++P Y VY YHQSQA+G       P P+ + P + + PP S
Sbjct: 181 GRVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSFSKPLSFSTPPIS 204

[Close]

BLAST of CmaCh04G012400 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-37
Identity = 101/243 (41.56%), Postives = 127/243 (52.26%), Query Frame = 0


Query: 3   GDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESA 62
           GDTT TKVFVGGLAWET KE M+ HFE+FG+ILEAV+ITDK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 63  KKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGNHV 122
           + AC D+ P+I+GRRANCNLASLG +RS        P  P  G  G         +    
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSK-------PSTPNHGGGGRINNMRVMMSTMQT 127

Query: 123 QWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIY--- 182
            +  P    P  F H PH  +  +GYSP    Y +   +  +   G  +GG Y  +Y   
Sbjct: 128 GFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNL-YGMYGCTSGGQYG-VYGNR 187

Query: 183 ---PGQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSKPAS 240
               G     A +  P YP    H       P   F    ++  P    PPT  M +   
Sbjct: 188 NSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQVCF 240

[Close]

BLAST of CmaCh04G012400 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-37
Identity = 99/237 (41.77%), Postives = 125/237 (52.74%), Query Frame = 0


Query: 3   GDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESA 62
           GDTT TKVFVGGLAWET KE M+ HFE+FG+ILEAV+ITDK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 63  KKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGNHV 122
           + AC D+ P+I+GRRANCNLASLG +RS        P  P  G  G         +    
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSK-------PSTPNHGGGGRINNMRVMMSTMQT 127

Query: 123 QWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIY--- 182
            +  P    P  F H PH  +  +GYSP    Y +   +  +   G  +GG Y  +Y   
Sbjct: 128 GFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNL-YGMYGCTSGGQYG-VYGNR 187

Query: 183 ---PGQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSK 234
               G     A +  P YP    H       P   F    ++  P    PPT  M +
Sbjct: 188 NSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQ 234

[Close]

BLAST of CmaCh04G012400 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-37
Identity = 99/237 (41.77%), Postives = 125/237 (52.74%), Query Frame = 0


Query: 3   GDTTLTKVFVGGLAWETPKEAMRDHFEKFGDILEAVIITDKLTGRSKGYGFVTFKDAESA 62
           GDTT TKVFVGGLAWET KE M+ HFE+FG+ILEAV+ITDK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 63  KKACEDSAPIINGRRANCNLASLGARRSSRSASATPPQGPQPGSNGGAPRTTSAAAGNHV 122
           + AC D+ P+I+GRRANCNLASLG +RS        P  P  G  G         +    
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQRSK-------PSTPNHGGGGRINNMRVMMSTMQT 127

Query: 123 QWYYPAGTHPTAFHHQPHQAVPFYGYSPSPTTYIATDISYNHQKVGYMNGGPYAQIY--- 182
            +  P    P  F H PH  +  +GYSP    Y +   +  +   G  +GG Y  +Y   
Sbjct: 128 GFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNL-YGMYGCTSGGQYG-VYGNR 187

Query: 183 ---PGQAMVGANTLMPMYPVYHYHQSQAMGMPAHIFPPSPTAAGPFAAVPPTSIMSK 234
               G     A +  P YP    H       P   F    ++  P    PPT  M +
Sbjct: 188 NSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQ 234

The following BLAST results are available for this feature:

BLAST of CmaCh04G012400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.3e-59	53.97	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	2.0e-23	59.09	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q9I8B3	2.7e-23	60.00	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q6P8A7	2.7e-23	60.00	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]
D3Z4I3	3.5e-23	60.00	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]

BLAST of CmaCh04G012400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KFD3	3.1e-139	100.00	probable RNA-binding protein ARP1 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1KH37	2.9e-137	99.60	probable RNA-binding protein ARP1 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1GZW6	2.4e-136	98.79	probable RNA-binding protein ARP1 isoform X5 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KFF3	7.1e-136	100.00	probable RNA-binding protein ARP1 isoform X6 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1KCZ0	7.1e-136	100.00	probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CmaCh04G012400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022999430.1	6.3e-139	100.00	probable RNA-binding protein ARP1 isoform X4 [Cucurbita maxima]	[more]
XP_023532900.1	2.0e-137	99.19	probable RNA-binding protein ARP1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022999439.1	5.9e-137	99.60	probable RNA-binding protein ARP1 isoform X5 [Cucurbita maxima]	[more]
XP_022957205.1	5.0e-136	98.79	probable RNA-binding protein ARP1 isoform X5 [Cucurbita moschata]	[more]
XP_022999423.1	1.5e-135	100.00	probable RNA-binding protein ARP1 isoform X3 [Cucurbita maxima]	[more]

BLAST of CmaCh04G012400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	1.6e-60	53.97	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	1.1e-45	49.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	5.7e-37	41.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	5.7e-37	41.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	5.7e-37	41.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..81 e-value: 7.2E-24 score: 95.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..67 e-value: 3.9E-18 score: 65.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..85 score: 17.301737
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..90 e-value: 9.4E-25 score: 88.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..114
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 2..240
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 2..240
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 8..83 e-value: 2.53066E-43 score: 139.287
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G012400.1	CmaCh04G012400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding