CmaCh04G012010 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G012010
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 6118362 .. 6118931 (-)
RNA-Seq ExpressionCmaCh04G012010
SyntenyCmaCh04G012010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAGCGTACGTAAGCCTTATGAAATGGAGAGCCATTCGGTCCTGCTGTACACGTGTACGGTAGATTACAAGATTGTAAAGTGATAATTGTAGAACCGCGTCGTATAGGATCATTCGCTATAGTAAAAATACCAAAGCTCAGATTCTGTCGCTATCCAGTAGTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGCGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGGTCAGCTCACTGAGAATCTATGATAGTTGTGAAATTTCGGAGGTTTCAGTCTCTCATTGTTGGTTTCTTTGATTTTGATCGATATTGAATTGCTTGTGCATTTCTGAATCTTCTTTTGTGTGTTTCGGAATTTATTTTGATCGTGATTAGCTCTGATCGGCGTTCGATTTTTGGTTGCTCTATGAGTTTTGATTTTTGGTTGTTCGTGTGCAGATTGATTCTCGAAATCTTTGAGGTTTGCGCTTTCCGTGGTTCTTTGTTGTGTTTTTCATCGGTAACTTGA

mRNA sequence

ATGATAATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAGCGTACATTCTGTCGCTATCCAGTAGTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGCGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGATTGATTCTCGAAATCTTTGAGGTTTGCGCTTTCCGTGGTTCTTTGTTGTGTTTTTCATCGGTAACTTGA

Coding sequence (CDS)

ATGATAATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAGCGTACATTCTGTCGCTATCCAGTAGTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGCGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGATTGATTCTCGAAATCTTTGAGGTTTGCGCTTTCCGTGGTTCTTTGTTGTGTTTTTCATCGGTAACTTGA

Protein sequence

MIIQYQARFPVRILPERTFCRYPVVPRKSLSISSHPEEHRAFQPPRQFLRRRLILEIFEVCAFRGSLLCFSSVT
Homology
[Close]
BLAST of CmaCh04G012010 vs. ExPASy TrEMBL
Match: A0A0A0KNV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181170 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 24 VVPRKSLSISSHPEEHR---AFQPPRQFLRRRLILEI-FEVCAFRGSLLCFSSVT 75
          +VP KSLS+SSH    R     +P  +FLRRRLILEI F+VC F GS LCFSS+T
Sbjct: 23 LVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIFFQVCDFGGSFLCFSSLT 77

[Close]
BLAST of CmaCh04G012010 vs. NCBI nr
Match: KGN50534.1 (hypothetical protein Csa_000622 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 24 VVPRKSLSISSHPEEHR---AFQPPRQFLRRRLILEI-FEVCAFRGSLLCFSSVT 75
          +VP KSLS+SSH    R     +P  +FLRRRLILEI F+VC F GS LCFSS+T
Sbjct: 23 LVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIFFQVCDFGGSFLCFSSLT 77

The following BLAST results are available for this feature:
BLAST of CmaCh04G012010 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G012010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNV05.1e-0560.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181170 PE=4 SV=1[more]
BLAST of CmaCh04G012010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50534.11.0e-0460.00hypothetical protein Csa_000622 [Cucumis sativus][more]
BLAST of CmaCh04G012010 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G012010.1CmaCh04G012010.1mRNA