CmaCh04G011700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G011700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LOB domain-containing protein 33-like
Location	Cma_Chr04: 5968312 .. 5969125 (-)
RNA-Seq Expression	CmaCh04G011700
Synteny	CmaCh04G011700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTGTACTTAAAACTCATCATATTATTGACCCAATGGCTGTACTTAACTCTTTTGATTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTGTGGCGCCTGCAAGTTTCTGAGGCGAAAATGCAGCGATCAATGCGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGCTGCATCTCCCCATGCATGTCCGAAGCCAGGCTGCTATTACCGTCACTTATGAAGCCCTTGAGCGCATGCGAGATCCCGCCTATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTTGTTTTCAAATCTCTAAACATTTAAACACCTCATGAGTTTTTAAAATCTTTTTAGATCTTTCTCTTGCAGGTCGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTGTGATGATGCCCAAAAGGATGATCCAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTCACACATCAGGCTTTCATGTTTCAGTCGACGAGAATTTTGGTGGTTATCCATGGATACTTGGATGATGATGATGAAGTTTTGTAGTTGCCCTTTTGCATGGAATAATAATATTCGTC

mRNA sequence

TTTTGTACTTAAAACTCATCATATTATTGACCCAATGGCTGTACTTAACTCTTTTGATTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTGTGGCGCCTGCAAGTTTCTGAGGCGAAAATGCAGCGATCAATGCGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGCTGCATCTCCCCATGCATGTCCGAAGCCAGGCTGCTATTACCGTCACTTATGAAGCCCTTGAGCGCATGCGAGATCCCGCCTATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTCGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTGTGATGATGCCCAAAAGGATGATCCAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTCACACATCAGGCTTTCATGTTTCAGTCGACGAGAATTTTGGTGGTTATCCATGGATACTTGGATGATGATGATGAAGTTTTGTAGTTGCCCTTTTGCATGGAATAATAATATTCGTC

Coding sequence (CDS)

ATGGCTGTACTTAACTCTTTTGATTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTGTGGCGCCTGCAAGTTTCTGAGGCGAAAATGCAGCGATCAATGCGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGCTGCATCTCCCCATGCATGTCCGAAGCCAGGCTGCTATTACCGTCACTTATGAAGCCCTTGAGCGCATGCGAGATCCCGCCTATGGCTGCGTCTTGCATATCTTCGCGTTGCAGCAAGAGGTCGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCAAACTTGTGATGATGCCCAAAAGGATGATCCAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTCACACATCAGGCTTTCATGTTTCAGTCGACGAGAATTTTGGTGGTTATCCATGGATACTTGGATGA

Protein sequence

MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLCLGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG

Homology

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BLAST of CmaCh04G011700 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.8e-39
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 75  SQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIAN 124
           + AAIT++YEAL RMRDP YGCV HIFAL Q+V +LQEEI+ LG+Q+ N
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKN 110

[Close]

BLAST of CmaCh04G011700 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.8e-35
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 11  SSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLP 70
           +SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 71  MHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA 130
           +  R +AAIT++YEA  R++DP YGCV HIFALQQ+V +LQ E++IL  Q A  +    +
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 131 ISAVENP 138
            ++ ENP
Sbjct: 122 PTS-ENP 127

[Close]

BLAST of CmaCh04G011700 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-32
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 69  LPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           +P+H R +A +T+ YEA  R+ DP YGCV HIFALQQ+VA LQ ++  +  QIA   T+ 
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 129 A 130
           A
Sbjct: 124 A 124

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BLAST of CmaCh04G011700 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 6.2e-32
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 6   SFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKL 65
           S     SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKL
Sbjct: 23  SSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKL 82

Query: 66  LLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           LLH+P+H RS A +T+ YEA  R+RDP YGCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 83  LLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of CmaCh04G011700 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-31
Identity = 73/145 (50.34%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 75  SQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAV 134
            +AA T+ YEA  R +DP YGCV HIF+LQQ+V +LQ +++IL  Q         ++ A+
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAI 121

Query: 135 ENPFIEMNDFGMNSNHCQNELPSQL 160
           ++P IE      N N+ Q+  P  L
Sbjct: 122 DSPSIE------NPNYYQDTKPQYL 134

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BLAST of CmaCh04G011700 vs. ExPASy TrEMBL
Match: A0A6J1L156 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111498911 PE=3 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.4e-119
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of CmaCh04G011700 vs. ExPASy TrEMBL
Match: A0A6J1H1E9 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458694 PE=3 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.7e-109
Identity = 204/218 (93.58%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+D   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+T DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           LGEKDGGFGFCHSNHVV TSGF VSV+ENFGGYPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of CmaCh04G011700 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.8e-77
Identity = 157/217 (72.35%), Postives = 180/217 (82.95%), Query Frame = 0


Query: 13  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 72
           +SS+SS+SCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 5   NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64

Query: 73  VRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAIS 132
           +RS AAITV YEALERMRDP YGCV HIFALQQEVASLQEEI+ILG+QIAN  TTG +I+
Sbjct: 65  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATTGGSIA 124

Query: 133 AVENPFI-------EMNDFG-MNSNHCQNELPSQLLPYQTCDDAQKDD---PMISPLLCL 192
           AV+NPFI       +M+ FG MN+N+ QNEL S+ LPYQ+ D+ Q D+    MISPL CL
Sbjct: 125 AVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSE-LPYQSFDNVQNDNTTAQMISPLFCL 184

Query: 193 GEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           GE+DG F F +SN+VV +S F VSV+EN  GYPWI+G
Sbjct: 185 GEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of CmaCh04G011700 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.9e-76
Identity = 158/218 (72.48%), Postives = 179/218 (82.11%), Query Frame = 0


Query: 13  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 72
           +SS++SSSCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 5   NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64

Query: 73  VRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAIS 132
            RS AAITV YEALERMRDP YGC+ HIFALQQEV SLQEEI+ILG+QIANL TTG +I+
Sbjct: 65  TRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATTGGSIA 124

Query: 133 AVENPFI--------EMNDFGM-NSNHCQNELPSQLLPYQTCDDAQKDD--PMISPLLCL 192
           AVENPFI        +M+ F M N+N+ QNEL S+ LPYQ+ D+ Q D+   MISPL CL
Sbjct: 125 AVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASE-LPYQSFDNIQNDNTAQMISPLFCL 184

Query: 193 GEKDGGFGFCHSNHVVH-TSGFHVSVDENFGGYPWILG 219
           GE+DG F FC+SN+VV  TS F VSV+EN  GYPWI+G
Sbjct: 185 GEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of CmaCh04G011700 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.0e-66
Identity = 146/219 (66.67%), Postives = 166/219 (75.80%), Query Frame = 0


Query: 4   LNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS 63
           +    SSSSSSSSSSSSCGACKFLRRKCS+ CVFAP F+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 64  KLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIAN 123
           KLLLHLPMHVRS AAITV+YEALERMRDP YGCV HIF LQQE+ SLQEEI +LG+QIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 124 LLTTGAAISAVENPFIE------MNDFGMNSNHCQNELPSQLLPYQTCDDAQ-KDDPMIS 183
             T    ++ VENP +E      +N+  MN+N  QNEL SQL    T D+ Q  D  MIS
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQL---PTFDEVQINDAQMIS 180

Query: 184 PLLCLGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPW 216
           PL C+GE++G FG C+ N+ +  S F VSVDENF  Y W
Sbjct: 181 PLFCIGEEEGFFG-CNPNNAMENSAFDVSVDENF-AYLW 214

[Close]

BLAST of CmaCh04G011700 vs. NCBI nr
Match: XP_023006079.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 438.7 bits (1127), Expect = 2.9e-119
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180

Query: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of CmaCh04G011700 vs. NCBI nr
Match: KAG7031596.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 414.5 bits (1064), Expect = 5.8e-112
Identity = 208/218 (95.41%), Postives = 209/218 (95.87%), Query Frame = 0


Query: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVRSQAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180
           IANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           LGEKDGG GFCHSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of CmaCh04G011700 vs. NCBI nr
Match: KAG6600983.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 413.3 bits (1061), Expect = 1.3e-111
Identity = 208/218 (95.41%), Postives = 210/218 (96.33%), Query Frame = 0


Query: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+DSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQT DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           LGEKDGGFGF HSNHVV TSGFHVSVDENFG YPWILG
Sbjct: 181 LGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of CmaCh04G011700 vs. NCBI nr
Match: XP_022957254.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 405.2 bits (1040), Expect = 3.5e-109
Identity = 204/218 (93.58%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+D   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQ 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQEVASLQEEIQILGTQ
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVASLQEEIQILGTQ 120

Query: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLLC 180
           IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+T DD QKDD MISPLLC
Sbjct: 121 IANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLC 180

Query: 181 LGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           LGEKDGGFGFCHSNHVV TSGF VSV+ENFGGYPWILG
Sbjct: 181 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of CmaCh04G011700 vs. NCBI nr
Match: XP_023548244.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101
Identity = 200/223 (89.69%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MAVLNSFD---SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60
           M VLNS+D   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60

Query: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQIL 120
           GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPA GCV HIFALQQEVASLQEEIQIL
Sbjct: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQEVASLQEEIQIL 120

Query: 121 GTQIANLLTTGAAISAVENPFIEMN--DFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMI 180
           GTQIAN LTTGAAISAVENPFIEMN  DFGMNSNH QN    QLLPYQT D  QKDD MI
Sbjct: 121 GTQIANFLTTGAAISAVENPFIEMNDYDFGMNSNHSQN----QLLPYQTSDGVQKDDQMI 180

Query: 181 SPLLCLGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 219
           SPLLCLGEKDGGFGFCHSNHVV  SGF VSV+ENFGGYPWILG
Sbjct: 181 SPLLCLGEKDGGFGFCHSNHVVERSGFDVSVEENFGGYPWILG 219

[Close]

BLAST of CmaCh04G011700 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-40
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 75  SQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIAN 124
           + AAIT++YEAL RMRDP YGCV HIFAL Q+V +LQEEI+ LG+Q+ N
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKN 110

[Close]

BLAST of CmaCh04G011700 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 148.7 bits (374), Expect = 5.6e-36
Identity = 77/127 (60.63%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 11  SSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLP 70
           +SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP
Sbjct: 2   TSSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLP 61

Query: 71  MHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAA 130
           +  R +AAIT++YEA  R++DP YGCV HIFALQQ+V +LQ E++IL  Q A  +    +
Sbjct: 62  ISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADS 121

Query: 131 ISAVENP 138
            ++ ENP
Sbjct: 122 PTS-ENP 127

[Close]

BLAST of CmaCh04G011700 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-33
Identity = 67/121 (55.37%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 9   SSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLH 68
           S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 69  LPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTG 128
           +P+H R +A +T+ YEA  R+ DP YGCV HIFALQQ+VA LQ ++  +  QIA   T+ 
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 129 A 130
           A
Sbjct: 124 A 124

[Close]

BLAST of CmaCh04G011700 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 139.0 bits (349), Expect = 4.4e-33
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 6   SFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKL 65
           S     SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKL
Sbjct: 23  SSGGGGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKL 82

Query: 66  LLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANL 125
           LLH+P+H RS A +T+ YEA  R+RDP YGCV HIFALQQ+V +LQ E+  L   +A+L
Sbjct: 83  LLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASL 141

[Close]

BLAST of CmaCh04G011700 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 138.3 bits (347), Expect = 7.5e-33
Identity = 73/145 (50.34%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 15  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 74
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 75  SQAAITVTYEALERMRDPAYGCVLHIFALQQEVASLQEEIQILGTQIANLLTTGAAISAV 134
            +AA T+ YEA  R +DP YGCV HIF+LQQ+V +LQ +++IL  Q         ++ A+
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQ------SMMAI 121

Query: 135 ENPFIEMNDFGMNSNHCQNELPSQL 160
           ++P IE      N N+ Q+  P  L
Sbjct: 122 DSPSIE------NPNYYQDTKPQYL 134

The following BLAST results are available for this feature:

BLAST of CmaCh04G011700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	1.8e-39	72.48	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	7.8e-35	60.63	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
Q9SLB7	6.2e-32	55.37	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]
O22131	6.2e-32	57.98	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SLB6	1.1e-31	50.34	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]

BLAST of CmaCh04G011700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L156	1.4e-119	100.00	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149891...	[more]
A0A6J1H1E9	1.7e-109	93.58	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458...	[more]
A0A0A0KNX8	3.8e-77	72.35	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	1.9e-76	72.48	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]
A0A6J1K6X9	1.0e-66	66.67	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]

BLAST of CmaCh04G011700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006079.1	2.9e-119	100.00	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
KAG7031596.1	5.8e-112	95.41	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6600983.1	1.3e-111	95.41	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022957254.1	3.5e-109	93.58	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
XP_023548244.1	1.2e-101	89.69	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh04G011700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	1.3e-40	72.48	LOB domain-containing protein 33	[more]
AT3G58190.1	5.6e-36	60.63	lateral organ boundaries-domain 29	[more]
AT2G42430.1	4.4e-33	55.37	lateral organ boundaries-domain 16	[more]
AT2G45420.1	4.4e-33	57.98	LOB domain-containing protein 18	[more]
AT2G42440.1	7.5e-33	50.34	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 17..153
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 17..153
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 20..116 e-value: 1.2E-32 score: 112.4
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 19..121 score: 21.147696

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G011700.1	CmaCh04G011700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus