CmaCh04G011630 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G011630
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 5937098 .. 5937714 (+)
RNA-Seq ExpressionCmaCh04G011630
SyntenyCmaCh04G011630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTTAAGAACACAATAGGAGTAATCCAAGAATATTCTATCATTTTTTTTCCTCGTACATTGAGTTATTCTGGTTTCGATGGGAGGGCTTTCTTGTTTGGTTTGGTGAAGGCTCTGCTCTGCACATTTTTGTTGGCCCTTTTGTTTGGTTTGCTGGACGCATTGAATTAAGCTGGTTGTTTGAGTTGTCTGTGTAAGCAGCTTGGTATCTTGAAAGATATAATGCATGAAGTTTACACGCAGGCCTCTTTACCTTACCTGTTCAACTGAGGGAACTGACTGCAAATAAAGTTGCTCAGCTTCTAAACTTTCTGCAATTCAAGGAGGATAGATGTATGTATGCTGAGAGTTGGGGCCTATCCTGAAATTGGACAAAGATGTTTATGAGTGAAGGGGACAGGCCAAATGCTTTGGATGGATCAAATTCTTCTGTTTTATTTTATCGTTTCATATTTTTCTTTTATGTCTGTCTATATCTGGAGTATGATTGTAGAATATAGCACTAAGATTTTTCATCTATCTAAGAAACCTTAGAGTTCTCTTGGTTTATTGATCACTCACTCTATATTGCTCCCTACTTCTGATTTTCTTTTCGAGCTATGACTCTACACTTC

mRNA sequence

ATGCCATTTAAGAACACAATAGGAGTAATCCAAGAATATTCTATCATTTTTTTTCCTCGTACATTGAGTTATTCTGGTTTCGATGGGAGGGCTTTCTTGTTTGGTTTGGTGAAGGCTCTGCTCTGCACATTTTTGTTGGCCCTTTTGTTTGGCCTCTTTACCTTACCTGTTCAACTGAGGGAACTGACTGCAAATAAAGTTGCTCAGCTTCTAAACTTTCTGCAATTCAAGGAGGATAGATGTATGTATGCTGAGAGTTGGGGCCTATCCTGAAATTGGACAAAGATGTTTATGAGTGAAGGGGACAGGCCAAATGCTTTGGATGGATCAAATTCTTCTGTTTTATTTTATCGTTTCATATTTTTCTTTTATGTCTGTCTATATCTGGAGTATGATTGTAGAATATAGCACTAAGATTTTTCATCTATCTAAGAAACCTTAGAGTTCTCTTGGTTTATTGATCACTCACTCTATATTGCTCCCTACTTCTGATTTTCTTTTCGAGCTATGACTCTACACTTC

Coding sequence (CDS)

ATGCCATTTAAGAACACAATAGGAGTAATCCAAGAATATTCTATCATTTTTTTTCCTCGTACATTGAGTTATTCTGGTTTCGATGGGAGGGCTTTCTTGTTTGGTTTGGTGAAGGCTCTGCTCTGCACATTTTTGTTGGCCCTTTTGTTTGGCCTCTTTACCTTACCTGTTCAACTGAGGGAACTGACTGCAAATAAAGTTGCTCAGCTTCTAAACTTTCTGCAATTCAAGGAGGATAGATGTATGTATGCTGAGAGTTGGGGCCTATCCTGA

Protein sequence

MPFKNTIGVIQEYSIIFFPRTLSYSGFDGRAFLFGLVKALLCTFLLALLFGLFTLPVQLRELTANKVAQLLNFLQFKEDRCMYAESWGLS
Homology
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BLAST of CmaCh04G011630 vs. NCBI nr
Match: KAG7031589.1 (Serine/threonine-protein phosphatase PP1 isozyme 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-12
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 23  SYSG-FDGRAFLFGLVKALLCTFLL---ALLFGLFTLPVQLRELTANKVAQLLNFLQFKE 82
           +Y G FD    L  + + L+C+F +   +   GLFTLPVQLRELTANKVAQLLNFLQFKE
Sbjct: 276 NYCGEFDNAGALMSVDEELMCSFQILKPSEKKGLFTLPVQLRELTANKVAQLLNFLQFKE 335

Query: 83  DRCMYAESWGLS 91
           DR MYAESWGLS
Sbjct: 336 DRYMYAESWGLS 347

The following BLAST results are available for this feature:
BLAST of CmaCh04G011630 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011630 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G011630 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031589.13.7e-1265.28Serine/threonine-protein phosphatase PP1 isozyme 4, partial [Cucurbita argyrospe... [more]
BLAST of CmaCh04G011630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G011630.1CmaCh04G011630.1mRNA