CmaCh04G009880 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G009880
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRibosomal biogenesis, methyltransferase, EMG1/NEP
LocationCma_Chr04: 5093988 .. 5095225 (-)
RNA-Seq ExpressionCmaCh04G009880
SyntenyCmaCh04G009880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATTATTGGGTTTCTAAATCTTTTCATTTATCCATTTTTAAACATGATTATTATAAGTCAATTATAATTATCTTTTATTTTCTTCCTTTGTTCTTCAGGCTATCCCTCCCATGAATGACAACCCAGTAGAACATTTGGATTCTACTTACAGACATGTAAGTGGATGACCTAAATTTTTGTGTTTGTGTTTGTTTTGTTTAAGGTTTTGTTAATTAAAAGAAATTGTTGTTGTCGCTGTCGATGTGATATGCAGGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTAGGGGGTCAAGGCTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTAAGATTTTCTCTTCTGTATTGTCGGACTGTTGATCCTATGAATGGATTCTAATTAACTGGCTGGCTTAATACGAGTAATGAATGCAGGTGAGGTGCTTAGTGATCAGCATAGGGTTCTGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAGTCTTTGTTTAGTCTCATCCCTCAAGAGCGTCGAGTAATAGGTACGTATCTATTATGTAATCAATTTGTGGCTAGAAAGTGCTGATAGCTCCGTTTGAATATCGACCTCCATATTTAAGTTTACTTAACTTAGTTTTTATGGATGTTTATAGGGTGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTATGTATCACTCCAAAGAATCTATTGGGATTAGGTATGTAAAATTAAGAATATTTGTTTCTTTATTTATTGGGATTAGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAAGAAGAGATTGATCAATATGTCAAAGGTAATAAATTTTTGGAACAACAATTCAATTAGATAATGTATTAAAAAAAGAATGAACTGTTTTTTTTTTTTTTTTTTGTAGTTTCGGACCCCGGGACACCTACAAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCTAAACGAATGTCTCATGCTTAATGTCTTAGCTTGGATTTAACTTCTCAATAATTATCAAACGATGAACATTTCATCGTATGGTTTTCGAGTTAAATTTGTTAATGCACATTTTCTCA

mRNA sequence

TGATTATTGGGTTTCTAAATCTTTTCATTTATCCATTTTTAAACATGATTATTATAAGTCAATTATAATTATCTTTTATTTTCTTCCTTTGTTCTTCAGGCTATCCCTCCCATGAATGACAACCCAGTAGAACATTTGGATTCTACTTACAGACATGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTAGGGGGTCAAGGCTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTGAGGTGCTTAGTGATCAGCATAGGGTTCTGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAGTCTTTGTTTAGTCTCATCCCTCAAGAGCGTCGAGTAATAGGGTGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAAGAAGAGATTGATCAATATGTCAAAGTTTCGGACCCCGGGACACCTACAAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAAGGTTAAGAGTATCTCTAAACGAATGTCTCATGCTTAATGTCTTAGCTTGGATTTAACTTCTCAATAATTATCAAACGATGAACATTTCATCGTATGGTTTTCGAGTTAAATTTGTTAATGCACATTTTCTCA

Coding sequence (CDS)

ATGAATGACAACCCAGTAGAACATTTGGATTCTACTTACAGACATGTAGTGGATGTGATTTTTACGAGCCTTTTGAATTTTTTAGGCAGATTAGGCGGTCTCTATATTAATCTAGGGGGTCAAGGCTATCTTCAAATTTATTCTCCTCGAGCCTTTTGGGATGTTGATTCATTTCGAGAAATGTTGCGTGAGGTGCTTAGTGATCAGCATAGGGTTCTGCAAGAGAATGATGCAATTATTTGGCATAATACAAATTTGCAGTCTTTGTTTAGTCTCATCCCTCAAGAGCGTCGAGTAATAGGGTGCTTGCTAGAGGATCAGTATGGAAATAAACAAGAAATTAAGATTCATGACTTTTTGCGATTTTTGGTTCATCCTAATGAAAATTTGGTGTTTGTGGTCGGTGACTTTCGAAATTACAGAGTGCTCGAAGAAGAGATTGATCAATATGTCAAAGTTTCGGACCCCGGGACACCTACAAATCTGTGTGTCCGATTCATTTGTCAAGAATGTCAACGAAGATGGAATCTTATATAA

Protein sequence

MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI
Homology
BLAST of CmaCh04G009880 vs. ExPASy TrEMBL
Match: A0A6J1JNI2 (uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 9.1e-101
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 60
           MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE
Sbjct: 36  MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 95

Query: 61  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 120
           MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL
Sbjct: 96  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 155

Query: 121 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 179
           RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI
Sbjct: 156 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 213

BLAST of CmaCh04G009880 vs. ExPASy TrEMBL
Match: A0A6J1FQ78 (uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC111447242 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.5e-98
Identity = 175/178 (98.31%), Postives = 175/178 (98.31%), Query Frame = 0

Query: 1   MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 60
           MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINL GQGYLQIYSPRAFWDVDSFRE
Sbjct: 36  MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFRE 95

Query: 61  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 120
           MLREVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL
Sbjct: 96  MLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 155

Query: 121 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 179
           RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTP NLCVRFICQECQRRWNLI
Sbjct: 156 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPMNLCVRFICQECQRRWNLI 213

BLAST of CmaCh04G009880 vs. ExPASy TrEMBL
Match: A0A0A0KJD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 0

Query: 16  VVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQE 75
           VVDVIFTSLLNFLGRLGGLYINL GQGYLQI+SPRAFW+VDSFREMLREVLSDQHRV QE
Sbjct: 3   VVDVIFTSLLNFLGRLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVPQE 62

Query: 76  NDAIIWHNTNLQSLFSLIPQERRVIGCLL 105
           NDAI+WH TNLQ+LF+  P+ERR+IG LL
Sbjct: 63  NDAIVWHRTNLQALFNHFPRERRIIGTLL 91

BLAST of CmaCh04G009880 vs. ExPASy TrEMBL
Match: A0A2P5AQ36 (Ribosomal biogenesis, methyltransferase, EMG1/NEP OS=Parasponia andersonii OX=3476 GN=PanWU01x14_311050 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.5e-06
Identity = 47/181 (25.97%), Postives = 78/181 (43.09%), Query Frame = 0

Query: 2   NDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYS----PRAFWDVDS 61
           N NP ++        + +I  S LN  GRL  +Y+       +++      PR F     
Sbjct: 117 NKNPGDYRPDIAHQALLMILDSPLNKAGRLRAVYVRTEKGVLIEVKPVVRLPRTFKRFSG 176

Query: 62  FREMLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 121
               L + LS      +E    +  N   Q L    P + R IG      Y + + +K+H
Sbjct: 177 IILQLLQKLSINAAGKREKLLRVIKNPVTQYL----PVDSRKIGL----SYSSDKLVKMH 236

Query: 122 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNL 179
           D++    +   NLVFVVG   + ++  + +D Y+ VS        C+  ICQ  +R+WN+
Sbjct: 237 DYVGTFSN-ETNLVFVVGAMAHGKIEPDYVDDYIAVSGYPLSAAYCITMICQAMERKWNI 288

BLAST of CmaCh04G009880 vs. ExPASy TrEMBL
Match: A0A2P5ETQ5 (Ribosomal biogenesis, methyltransferase, EMG1/NEP OS=Trema orientale OX=63057 GN=TorRG33x02_152690 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.5e-06
Identity = 46/181 (25.41%), Postives = 77/181 (42.54%), Query Frame = 0

Query: 2   NDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYS----PRAFWDVDS 61
           N NP ++        + +I  S LN  GRL  +Y+       +++      PR F     
Sbjct: 117 NKNPGDYRPDIAHQALLMILDSPLNKAGRLRAVYVRTEKGVLIEVKPVVRLPRTFKRFSG 176

Query: 62  FREMLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIH 121
               L + LS      ++    +  N   Q L    P + R IG      Y + + +K+H
Sbjct: 177 IMLQLLQKLSINAAGKRQKLLRVIKNPVTQYL----PIDSRKIGL----SYSSDKLVKMH 236

Query: 122 DFLRFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNL 179
           D++        NLVFVVG   + ++  + +D Y+ VS        C+  ICQ  +R+WN+
Sbjct: 237 DYVE-TFSDETNLVFVVGAMAHGKIEPDYVDDYIAVSGYPLSAAYCITMICQAMERKWNI 288

BLAST of CmaCh04G009880 vs. NCBI nr
Match: XP_022989850.1 (uncharacterized protein LOC111486913 [Cucurbita maxima])

HSP 1 Score: 375.9 bits (964), Expect = 1.9e-100
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 1   MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 60
           MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE
Sbjct: 36  MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 95

Query: 61  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 120
           MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL
Sbjct: 96  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 155

Query: 121 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 179
           RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI
Sbjct: 156 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 213

BLAST of CmaCh04G009880 vs. NCBI nr
Match: KAG6600811.1 (hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370.2 bits (949), Expect = 1.0e-98
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0

Query: 1   MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 60
           MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINL GQGYLQIYSPRAFWDVDSFRE
Sbjct: 36  MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFRE 95

Query: 61  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 120
           MLREVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL
Sbjct: 96  MLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 155

Query: 121 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 179
           RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI
Sbjct: 156 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 213

BLAST of CmaCh04G009880 vs. NCBI nr
Match: XP_022942054.1 (uncharacterized protein LOC111447242 [Cucurbita moschata])

HSP 1 Score: 367.9 bits (943), Expect = 5.1e-98
Identity = 175/178 (98.31%), Postives = 175/178 (98.31%), Query Frame = 0

Query: 1   MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIYSPRAFWDVDSFRE 60
           MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINL GQGYLQIYSPRAFWDVDSFRE
Sbjct: 36  MNDNPVEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLRGQGYLQIYSPRAFWDVDSFRE 95

Query: 61  MLREVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 120
           MLREVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL
Sbjct: 96  MLREVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFL 155

Query: 121 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNLI 179
           RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTP NLCVRFICQECQRRWNLI
Sbjct: 156 RFLVHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPMNLCVRFICQECQRRWNLI 213

BLAST of CmaCh04G009880 vs. NCBI nr
Match: KAG7031448.1 (hypothetical protein SDJN02_05488 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.3 bits (469), Expect = 4.7e-43
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 64  EVLSDQHRVLQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 123
           EVLSDQHRV QENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL
Sbjct: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 64

Query: 124 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVS 155
           VHPNENLVFVVGDFRNYRVLEEEIDQYVKV+
Sbjct: 65  VHPNENLVFVVGDFRNYRVLEEEIDQYVKVN 95

BLAST of CmaCh04G009880 vs. NCBI nr
Match: XP_020208144.1 (uncharacterized protein LOC109793088 [Cajanus cajan])

HSP 1 Score: 79.0 bits (193), Expect = 4.7e-11
Identity = 50/174 (28.74%), Postives = 84/174 (48.28%), Query Frame = 0

Query: 6   VEHLDSTYRHVVDVIFTSLLNFLGRLGGLYINLGGQGYLQIY-SPRAFWDVDSFREMLRE 65
           +E++ +T+   ++ I  S LN  G +  +Y+N G  GY ++  + R      +F   LR+
Sbjct: 41  LENIAATHILPLEQILLSRLNAAGFIHAIYVNFGPMGYYELNPNTRPITQPATFEAQLRD 100

Query: 66  VLSDQHRVLQENDAIIWH-NTNLQSLFSLIPQERRVIGCLLEDQYGNKQEIKIHDFLRFL 125
           +         +ND +IW   +NL S+ S +P   + IGCL      ++  +   D++R  
Sbjct: 101 LFQAGTICNPDNDEVIWRVISNLSSILSTLPANSQKIGCLHGSASRSRGSMNFGDYIR-S 160

Query: 126 VHPNENLVFVVGDFRNYRVLEEEIDQYVKVSDPGTPTNLCVRFICQECQRRWNL 178
               +  VFVVG       ++  ID +VKVSD     N C+  I  E + +WNL
Sbjct: 161 ASDEQTYVFVVGQIDTR--IQAHIDDFVKVSDYDLVANHCLSRIISEMEIKWNL 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JNI29.1e-101100.00uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913... [more]
A0A6J1FQ782.5e-9898.31uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC1114472... [more]
A0A0A0KJD01.7e-3585.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1[more]
A0A2P5AQ366.5e-0625.97Ribosomal biogenesis, methyltransferase, EMG1/NEP OS=Parasponia andersonii OX=34... [more]
A0A2P5ETQ56.5e-0625.41Ribosomal biogenesis, methyltransferase, EMG1/NEP OS=Trema orientale OX=63057 GN... [more]
Match NameE-valueIdentityDescription
XP_022989850.11.9e-100100.00uncharacterized protein LOC111486913 [Cucurbita maxima][more]
KAG6600811.11.0e-9898.88hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022942054.15.1e-9898.31uncharacterized protein LOC111447242 [Cucurbita moschata][more]
KAG7031448.14.7e-4397.80hypothetical protein SDJN02_05488 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_020208144.14.7e-1128.74uncharacterized protein LOC109793088 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 12..178
e-value: 4.5E-7
score: 31.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G009880.1CmaCh04G009880.1mRNA