CmaCh04G008020 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G008020
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Location	Cma_Chr04: 4105250 .. 4106381 (+)
RNA-Seq Expression	CmaCh04G008020
Synteny	CmaCh04G008020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACACATCATATTCACAAAGCTACCACGTGTAATTCAACCAATAAACACACCGTCAATGCATAACCACAACCCTCTTCAACTCCAACCTCTCCAACCAAATTCACAAAGGAGAGAATATGTTGAGAACCTGGTTCCGCAATGCCTACAACAAGGCCGTCCCTAAGCCGGCGCCAAACCAGAAGTTTGGAGTACTGGACGGCCATCCTGCGGCTCAGCAACATGCACAAGAAGCCATAGAAGCTCATACCAACTTTAAATCCAATCAAAAGGAGTTCAGAGTGTATCGGTGGAGTCCTGAGCATCCCAACCACAAGCCTTTCCTTCAGTCTTTCTTCATTGATCTCTCTAAATGTGGCTCAATGGTATTGCATCATTTGATCTTCGTAATAACTAAGCTTGGCTGGTTAATTTATTGGGTAACTTTATTGTAGGTATTAGATGCCTTACAGAAGATAAAAGCAGAGGAAGACTCAAGCTTGAGCTACAGAAGGTCTTGCAGGGAAGGTATATGCGGATCATGTGCTATGAACATCGATGGAGCCAACACTGTGGCTTGCCTCAAACCTATTGATACTGACACTTCCAAACCCACCATTATAACGCCCCTTCCCCATATGTTTGTCATCAAAGATCTTGCTGTTGATCTCACCAATTTCTATCAGCAATACAAGTAATGTCATCCAATTTTTTGTTCTATATGGAACACAAATACAAGTGATCTAATACAAGCGTTACCCTTTATGTATAGGTCGATCGAGCCATGGTTGAAGACCAAAAGGTTGCCGAAGGATGGGCGAGAGTTCAGGCAATCTCCAGCGGAGAGGAGGAAGCTGGATGGGTTGTATGAGTGTATTCTGTGCGCTTGTTGCAGTGCTTCATGCCCTCCATATTGGTGGAATCCAGAGGAGTTTCTTGGCCCTGCTGCCTTGCTCCATGCCTGTCGATGGATCTCTGATAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCTGAAGACAAGACGAAACTGTATAGATGTAGAACTGTACAGAATTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCGGCGCCATTCACCACATGAAGGCTATGCATTTGCTCTCAAAGGACAACAATTAG

mRNA sequence

AGACACATCATATTCACAAAGCTACCACGTGTAATTCAACCAATAAACACACCGTCAATGCATAACCACAACCCTCTTCAACTCCAACCTCTCCAACCAAATTCACAAAGGAGAGAATATGTTGAGAACCTGGTTCCGCAATGCCTACAACAAGGCCGTCCCTAAGCCGGCGCCAAACCAGAAGTTTGGAGTACTGGACGGCCATCCTGCGGCTCAGCAACATGCACAAGAAGCCATAGAAGCTCATACCAACTTTAAATCCAATCAAAAGGAGTTCAGAGTGTATCGGTGGAGTCCTGAGCATCCCAACCACAAGCCTTTCCTTCAGTCTTTCTTCATTGATCTCTCTAAATGTGGCTCAATGGTATTAGATGCCTTACAGAAGATAAAAGCAGAGGAAGACTCAAGCTTGAGCTACAGAAGGTCTTGCAGGGAAGGTATATGCGGATCATGTGCTATGAACATCGATGGAGCCAACACTGTGGCTTGCCTCAAACCTATTGATACTGACACTTCCAAACCCACCATTATAACGCCCCTTCCCCATATGTTTGTCATCAAAGATCTTGCTGTTGATCTCACCAATTTCTATCAGCAATACAAGTCGATCGAGCCATGGTTGAAGACCAAAAGGTTGCCGAAGGATGGGCGAGAGTTCAGGCAATCTCCAGCGGAGAGGAGGAAGCTGGATGGGTTGTATGAGTGTATTCTGTGCGCTTGTTGCAGTGCTTCATGCCCTCCATATTGGTGGAATCCAGAGGAGTTTCTTGGCCCTGCTGCCTTGCTCCATGCCTGTCGATGGATCTCTGATAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCTGAAGACAAGACGAAACTGTATAGATGTAGAACTGTACAGAATTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCGGCGCCATTCACCACATGAAGGCTATGCATTTGCTCTCAAAGGACAACAATTAG

Coding sequence (CDS)

ATGTTGAGAACCTGGTTCCGCAATGCCTACAACAAGGCCGTCCCTAAGCCGGCGCCAAACCAGAAGTTTGGAGTACTGGACGGCCATCCTGCGGCTCAGCAACATGCACAAGAAGCCATAGAAGCTCATACCAACTTTAAATCCAATCAAAAGGAGTTCAGAGTGTATCGGTGGAGTCCTGAGCATCCCAACCACAAGCCTTTCCTTCAGTCTTTCTTCATTGATCTCTCTAAATGTGGCTCAATGGTATTAGATGCCTTACAGAAGATAAAAGCAGAGGAAGACTCAAGCTTGAGCTACAGAAGGTCTTGCAGGGAAGGTATATGCGGATCATGTGCTATGAACATCGATGGAGCCAACACTGTGGCTTGCCTCAAACCTATTGATACTGACACTTCCAAACCCACCATTATAACGCCCCTTCCCCATATGTTTGTCATCAAAGATCTTGCTGTTGATCTCACCAATTTCTATCAGCAATACAAGTCGATCGAGCCATGGTTGAAGACCAAAAGGTTGCCGAAGGATGGGCGAGAGTTCAGGCAATCTCCAGCGGAGAGGAGGAAGCTGGATGGGTTGTATGAGTGTATTCTGTGCGCTTGTTGCAGTGCTTCATGCCCTCCATATTGGTGGAATCCAGAGGAGTTTCTTGGCCCTGCTGCCTTGCTCCATGCCTGTCGATGGATCTCTGATAGTCGAGATGAGTTCGAGAAGGAACGATTGCAAGCAATAGCTGAAGACAAGACGAAACTGTATAGATGTAGAACTGTACAGAATTGCACAGCCAACTGCCCCAAAAGCCTCGATCCTTCCGGCGCCATTCACCACATGAAGGCTATGCATTTGCTCTCAAAGGACAACAATTAG

Protein sequence

MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN

Homology

[Close]

BLAST of CmaCh04G008020 vs. ExPASy Swiss-Prot
Match: Q9FJP9 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-3 PE=1 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 1.7e-114
Identity = 191/269 (71.00%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 23  FGVLDGHPAAQQHAQEAI-------EAHTNFKSNQKEFRVYRWSPEHPNHKPFLQSFFID 82
           F +L+GH AAQ  +++ +       E     K  +KEF++YRW+P+ PN KPFLQSFF+D
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 83  LSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDTDTSKP 142
           LS CG MVLD LQKIKAE+D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 143 TIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREFRQSPAERRKLDGLYE 202
           TIITPLPHM+VIKDL VDLTNFYQQYKS+EPWLKT++ PKDGRE RQSP +R+KLDGLYE
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 203 CILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKERLQAIAEDKTKLYRCR 262
           CILCACC+ SCP YWWNPEEF GPAALL A RWISDSRDE+ +ERLQAI E +TK+YRCR
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCR 271

Query: 263 TVQNCTANCPKSLDPSGAIHHMKAMHLLS 285
            ++NCTA CPK L+P+ AI  MK+ HLLS
Sbjct: 272 AIKNCTATCPKGLNPASAILKMKSKHLLS 300

[Close]

BLAST of CmaCh04G008020 vs. ExPASy Swiss-Prot
Match: Q6H4G3 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-2 PE=1 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.1e-100
Identity = 175/285 (61.40%), Postives = 212/285 (74.39%), Query Frame = 0


Query: 23  FGVLDGHPAAQQHAQEAIE---------------------AHTNFKSNQKEFRVYRWSPE 82
           F  L GHPAA+ +A++A E                     A +   S  KEFRVYRWSP+
Sbjct: 26  FPSLRGHPAARANARDAAEKQAALAAKEEEIRDHRRGDAAAASPAPSTVKEFRVYRWSPD 85

Query: 83  HPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANT 142
            P+ +P LQS+ +DL+ CG MVLD LQKIKAE D++L++RRSCREGICGSC+M IDG NT
Sbjct: 86  APSRRPHLQSYHVDLATCGPMVLDVLQKIKAEHDATLAFRRSCREGICGSCSMCIDGVNT 145

Query: 143 VACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPK-DGREF 202
           VACL+P+DTDTS  T +TPLPHM+V++DL VDLT+FYQQYKS+EPWLK K   K +  E 
Sbjct: 146 VACLRPVDTDTSSATTVTPLPHMYVVRDLVVDLTSFYQQYKSVEPWLKRKTKTKTETTEH 205

Query: 203 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 262
            QSP ER++LDGLYECILCACCSA+CP YWWN E FLGPAALLHA RW+SDSRDE+  ER
Sbjct: 206 AQSPEERKRLDGLYECILCACCSAACPSYWWNAEAFLGPAALLHAYRWVSDSRDEYAAER 265

Query: 263 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSK 286
           +QA+AE   KLYRCR +++CTA CPKSLDP+ AI  MK +H L K
Sbjct: 266 VQALAEGWDKLYRCRMIKSCTATCPKSLDPAAAISAMKTLHQLGK 310

[Close]

BLAST of CmaCh04G008020 vs. ExPASy Swiss-Prot
Match: Q9S827 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH2-1 PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.0e-86
Identity = 151/236 (63.98%), Postives = 182/236 (77.12%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           +N K F +YRW P+ P+ KP L+ + +DLS CG MVLD L KIK E+D SL++RRSCREG
Sbjct: 46  ANTKTFSIYRWDPDSPSTKPHLKDYKVDLSDCGPMVLDVLLKIKNEQDPSLTFRRSCREG 105

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I + +S  T I+PLPHMFVIKDL VD+TNFY QYKS+EPW
Sbjct: 106 ICGSCAMNIDGDNGLACLTKISSASSAST-ISPLPHMFVIKDLVVDMTNFYNQYKSVEPW 165

Query: 168 LKTKRL-PKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K   P+ G+E  Q+ A+R KLDG+YECILCACCS SCP YWWNPEE+LGPAALLHA 
Sbjct: 166 LKRKDAPPQPGKEIPQTKADRAKLDGMYECILCACCSTSCPSYWWNPEEYLGPAALLHAN 225

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHL 283
           RWI DSRD+F KERL +I  D+ KLYRC T++NCT  CPK L+P+  I  +K + L
Sbjct: 226 RWIQDSRDQFTKERLDSI-NDEFKLYRCHTIKNCTHACPKGLNPAKHIDTIKKLQL 279

[Close]

BLAST of CmaCh04G008020 vs. ExPASy Swiss-Prot
Match: Q8LB02 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 318.2 bits (814), Expect = 9.8e-86
Identity = 154/231 (66.67%), Postives = 178/231 (77.06%), Query Frame = 0


Query: 51  KEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICG 110
           K F++YRW+P++P  KP LQ + IDL  CG MVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 111 SCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKT 170
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDL VD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 171 KR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWI 230
           K      G+E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA RWI
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 228

Query: 231 SDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           SDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 229 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276

[Close]

BLAST of CmaCh04G008020 vs. ExPASy Swiss-Prot
Match: Q8LBZ7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 317.0 bits (811), Expect = 2.2e-85
Identity = 154/234 (65.81%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           SN K F++YRW+P++P  KP LQ++ IDL  CG MVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I  + S+ T ITPLPHMFVIKDL VD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 168 LKTKR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K       +E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA 
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

[Close]

BLAST of CmaCh04G008020 vs. ExPASy TrEMBL
Match: A0A6J1J3X0 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111481099 PE=3 SV=1)

HSP 1 Score: 611.7 bits (1576), Expect = 1.6e-171
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of CmaCh04G008020 vs. ExPASy TrEMBL
Match: A0A6J1FMU7 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111447254 PE=3 SV=1)

HSP 1 Score: 599.0 bits (1543), Expect = 1.1e-167
Identity = 281/288 (97.57%), Postives = 286/288 (99.31%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAY+KAVPKPA NQKFGVLDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYSKAVPKPAANQKFGVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF+KER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAED+TKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLS+DNN
Sbjct: 241 LQAIAEDETKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSRDNN 288

[Close]

BLAST of CmaCh04G008020 vs. ExPASy TrEMBL
Match: A0A6J1C7J5 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008137 PE=3 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.2e-140
Identity = 238/292 (81.51%), Postives = 258/292 (88.36%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAH----TNFKSNQKEFRVY 60
           ML++W R+ YNK         KFG L+GHPAAQQHA EA+EAH       KS+QKEF++Y
Sbjct: 1   MLKSWSRHGYNKVA-----KSKFGALEGHPAAQQHAAEAMEAHGEVQRKLKSHQKEFKIY 60

Query: 61  RWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNI 120
           RW+PE+PN KPFLQSFF+ LS CG MVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNI
Sbjct: 61  RWNPEYPNRKPFLQSFFVQLSNCGPMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNI 120

Query: 121 DGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKD 180
           DG NTVACLK ID DTSKPTIITPLPHMFVIKDL VDLTNFY QYKSIEPWLKTKRLP+D
Sbjct: 121 DGGNTVACLKLIDADTSKPTIITPLPHMFVIKDLVVDLTNFYHQYKSIEPWLKTKRLPED 180

Query: 181 GREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF 240
           GREF+QSP +R+KLDGLYECILCACC+ SCPPYWWNPEEFLGPAALLHA RWISDSRD+F
Sbjct: 181 GREFKQSPVQRKKLDGLYECILCACCTTSCPPYWWNPEEFLGPAALLHAYRWISDSRDDF 240

Query: 241 EKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           E+ERLQAIAEDKTKLYRCRTV+NCTANCPKSLDPSGAIH MKAMHL+SK NN
Sbjct: 241 EEERLQAIAEDKTKLYRCRTVKNCTANCPKSLDPSGAIHQMKAMHLISKSNN 287

[Close]

BLAST of CmaCh04G008020 vs. ExPASy TrEMBL
Match: A0A5A7TNF4 (Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005780 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 9.4e-140
Identity = 237/292 (81.16%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKS-----NQKEFRV 60
           ML++WFR+AYNK        Q+FGVL+ HP A+QHA+EA+EAH   KS     NQKEF++
Sbjct: 1   MLKSWFRHAYNK-----VSKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKI 60

Query: 61  YRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMN 120
           YRW+P++PNHKPFL SFF+DLSKCG MVLDALQ IKAE+DSSLSYRRSCREGICGSCAMN
Sbjct: 61  YRWNPQYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMN 120

Query: 121 IDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPK 180
           IDGANTVACLKPID DTSKPTIITPLPHM+VIKDL VDLTNFYQQYKSIEPWLKT+R  +
Sbjct: 121 IDGANTVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAE 180

Query: 181 DGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDE 240
            GREFRQ+PAER+KLDGLYECILCACCSASCPPYWWNPEEF+GPAALLHA RWISDSRDE
Sbjct: 181 GGREFRQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDE 240

Query: 241 FEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDN 288
           F+KERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPS AIH+MKAMHL+ + N
Sbjct: 241 FKKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of CmaCh04G008020 vs. ExPASy TrEMBL
Match: A0A1S3BY85 (Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494868 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 9.4e-140
Identity = 237/292 (81.16%), Postives = 262/292 (89.73%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKS-----NQKEFRV 60
           ML++WFR+AYNK        Q+FGVL+ HP A+QHA+EA+EAH   KS     NQKEF++
Sbjct: 1   MLKSWFRHAYNK-----VSKQRFGVLEEHPMAKQHAEEAMEAHGEIKSNLRFNNQKEFKI 60

Query: 61  YRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMN 120
           YRW+P++PNHKPFL SFF+DLSKCG MVLDALQ IKAE+DSSLSYRRSCREGICGSCAMN
Sbjct: 61  YRWNPQYPNHKPFLHSFFLDLSKCGPMVLDALQMIKAEKDSSLSYRRSCREGICGSCAMN 120

Query: 121 IDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPK 180
           IDGANTVACLKPID DTSKPTIITPLPHM+VIKDL VDLTNFYQQYKSIEPWLKT+R  +
Sbjct: 121 IDGANTVACLKPIDADTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSIEPWLKTRRSAE 180

Query: 181 DGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDE 240
            GREFRQ+PAER+KLDGLYECILCACCSASCPPYWWNPEEF+GPAALLHA RWISDSRDE
Sbjct: 181 GGREFRQTPAERKKLDGLYECILCACCSASCPPYWWNPEEFIGPAALLHAYRWISDSRDE 240

Query: 241 FEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDN 288
           F+KERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPS AIH+MKAMHL+ + N
Sbjct: 241 FKKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSSAIHNMKAMHLIFRSN 287

[Close]

BLAST of CmaCh04G008020 vs. NCBI nr
Match: XP_022982204.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucurbita maxima])

HSP 1 Score: 611.7 bits (1576), Expect = 3.3e-171
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of CmaCh04G008020 vs. NCBI nr
Match: KAG7031269.1 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 602.8 bits (1553), Expect = 1.5e-168
Identity = 283/288 (98.26%), Postives = 286/288 (99.31%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKAVPKPA NQ+FGVLDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAANQRFGVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCG+MVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGAMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of CmaCh04G008020 vs. NCBI nr
Match: XP_023528748.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 600.9 bits (1548), Expect = 5.8e-168
Identity = 282/288 (97.92%), Postives = 285/288 (98.96%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKA+PKP  NQKFG+LDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKALPKPPANQKFGLLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of CmaCh04G008020 vs. NCBI nr
Match: KAG6600633.1 (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 599.7 bits (1545), Expect = 1.3e-167
Identity = 282/288 (97.92%), Postives = 285/288 (98.96%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAYNKAVPKPA NQ+F VLDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYNKAVPKPAANQRFEVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCG+MVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGAMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN
Sbjct: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 288

[Close]

BLAST of CmaCh04G008020 vs. NCBI nr
Match: XP_022942066.1 (succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucurbita moschata])

HSP 1 Score: 599.0 bits (1543), Expect = 2.2e-167
Identity = 281/288 (97.57%), Postives = 286/288 (99.31%), Query Frame = 0


Query: 1   MLRTWFRNAYNKAVPKPAPNQKFGVLDGHPAAQQHAQEAIEAHTNFKSNQKEFRVYRWSP 60
           MLRTWFRNAY+KAVPKPA NQKFGVLDGHPAAQQHAQEA+EAHT FKSNQKEFRVYRWSP
Sbjct: 1   MLRTWFRNAYSKAVPKPAANQKFGVLDGHPAAQQHAQEAMEAHTKFKSNQKEFRVYRWSP 60

Query: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120
           EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN
Sbjct: 61  EHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGAN 120

Query: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180
           TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF
Sbjct: 121 TVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREF 180

Query: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKER 240
           RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEF+KER
Sbjct: 181 RQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFKKER 240

Query: 241 LQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSKDNN 289
           LQAIAED+TKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLS+DNN
Sbjct: 241 LQAIAEDETKLYRCRTVQNCTANCPKSLDPSGAIHHMKAMHLLSRDNN 288

[Close]

BLAST of CmaCh04G008020 vs. TAIR 10
Match: AT5G65165.1 (succinate dehydrogenase 2-3 )

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-115
Identity = 191/269 (71.00%), Postives = 224/269 (83.27%), Query Frame = 0


Query: 23  FGVLDGHPAAQQHAQEAI-------EAHTNFKSNQKEFRVYRWSPEHPNHKPFLQSFFID 82
           F +L+GH AAQ  +++ +       E     K  +KEF++YRW+P+ PN KPFLQSFF+D
Sbjct: 32  FPILNGHKAAQDLSKDTLKSQDITKEKEGQHKEVKKEFKIYRWNPDKPNSKPFLQSFFVD 91

Query: 83  LSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGANTVACLKPIDTDTSKP 142
           LS CG MVLD LQKIKAE+D+SLSYRRSCREGICGSC+MNIDG NTVACLKPI+ +TSKP
Sbjct: 92  LSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICGSCSMNIDGTNTVACLKPINPNTSKP 151

Query: 143 TIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKTKRLPKDGREFRQSPAERRKLDGLYE 202
           TIITPLPHM+VIKDL VDLTNFYQQYKS+EPWLKT++ PKDGRE RQSP +R+KLDGLYE
Sbjct: 152 TIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKTRKPPKDGREHRQSPKDRKKLDGLYE 211

Query: 203 CILCACCSASCPPYWWNPEEFLGPAALLHACRWISDSRDEFEKERLQAIAEDKTKLYRCR 262
           CILCACC+ SCP YWWNPEEF GPAALL A RWISDSRDE+ +ERLQAI E +TK+YRCR
Sbjct: 212 CILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEYREERLQAITESETKVYRCR 271

Query: 263 TVQNCTANCPKSLDPSGAIHHMKAMHLLS 285
            ++NCTA CPK L+P+ AI  MK+ HLLS
Sbjct: 272 AIKNCTATCPKGLNPASAILKMKSKHLLS 300

[Close]

BLAST of CmaCh04G008020 vs. TAIR 10
Match: AT5G40650.1 (succinate dehydrogenase 2-2 )

HSP 1 Score: 318.2 bits (814), Expect = 7.0e-87
Identity = 154/231 (66.67%), Postives = 178/231 (77.06%), Query Frame = 0


Query: 51  KEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREGICG 110
           K F++YRW+P++P  KP LQ + IDL  CG MVLDAL KIK E D SL++RRSCREGICG
Sbjct: 49  KTFQIYRWNPDNPG-KPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICG 108

Query: 111 SCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPWLKT 170
           SCAMNIDG N +ACL  I++  SK T ITPLPHMFVIKDL VD+TNFY QYKSIEPWLK 
Sbjct: 109 SCAMNIDGCNGLACLTKIESG-SKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKR 168

Query: 171 KR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHACRWI 230
           K      G+E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA RWI
Sbjct: 169 KNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 228

Query: 231 SDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           SDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 229 SDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 276

[Close]

BLAST of CmaCh04G008020 vs. TAIR 10
Match: AT3G27380.1 (succinate dehydrogenase 2-1 )

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-86
Identity = 154/234 (65.81%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           SN K F++YRW+P++P  KP LQ++ IDL  CG MVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I  + S+ T ITPLPHMFVIKDL VD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 168 LKTKR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K       +E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA 
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

[Close]

BLAST of CmaCh04G008020 vs. TAIR 10
Match: AT3G27380.2 (succinate dehydrogenase 2-1 )

HSP 1 Score: 317.0 bits (811), Expect = 1.6e-86
Identity = 154/234 (65.81%), Postives = 179/234 (76.50%), Query Frame = 0


Query: 48  SNQKEFRVYRWSPEHPNHKPFLQSFFIDLSKCGSMVLDALQKIKAEEDSSLSYRRSCREG 107
           SN K F++YRW+P++P  KP LQ++ IDL  CG MVLDAL KIK E D SL++RRSCREG
Sbjct: 47  SNLKTFQIYRWNPDNPG-KPELQNYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREG 106

Query: 108 ICGSCAMNIDGANTVACLKPIDTDTSKPTIITPLPHMFVIKDLAVDLTNFYQQYKSIEPW 167
           ICGSCAMNIDG N +ACL  I  + S+ T ITPLPHMFVIKDL VD+TNFY QYKSIEPW
Sbjct: 107 ICGSCAMNIDGCNGLACLTKIQDEASE-TTITPLPHMFVIKDLVVDMTNFYNQYKSIEPW 166

Query: 168 LKTKR-LPKDGREFRQSPAERRKLDGLYECILCACCSASCPPYWWNPEEFLGPAALLHAC 227
           LK K       +E  QS  +R KLDG+YECILCACCS SCP YWWNPE +LGPAALLHA 
Sbjct: 167 LKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHAN 226

Query: 228 RWISDSRDEFEKERLQAIAEDKTKLYRCRTVQNCTANCPKSLDPSGAIHHMKAM 281
           RWISDSRDE+ KERL+AI +D+ KLYRC T+ NC   CPK L+P   I H+K +
Sbjct: 227 RWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQITHIKQL 277

The following BLAST results are available for this feature:

BLAST of CmaCh04G008020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJP9	1.7e-114	71.00	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Ara...	[more]
Q6H4G3	3.1e-100	61.40	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ory...	[more]
Q9S827	2.0e-86	63.98	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ory...	[more]
Q8LB02	9.8e-86	66.67	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Ara...	[more]
Q8LBZ7	2.2e-85	65.81	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Ara...	[more]

BLAST of CmaCh04G008020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3X0	1.6e-171	100.00	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1FMU7	1.1e-167	97.57	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Cucur...	[more]
A0A6J1C7J5	4.2e-140	81.51	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Momor...	[more]
A0A5A7TNF4	9.4e-140	81.16	Iron-sulfur subunit of complex II OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BY85	9.4e-140	81.16	Iron-sulfur subunit of complex II OS=Cucumis melo OX=3656 GN=LOC103494868 PE=3 S...	[more]

BLAST of CmaCh04G008020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982204.1	3.3e-171	100.00	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucur...	[more]
KAG7031269.1	1.5e-168	98.26	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, parti...	[more]
XP_023528748.1	5.8e-168	97.92	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucur...	[more]
KAG6600633.1	1.3e-167	97.92	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial, parti...	[more]
XP_022942066.1	2.2e-167	97.57	succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Cucur...	[more]

BLAST of CmaCh04G008020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65165.1	1.2e-115	71.00	succinate dehydrogenase 2-3	[more]
AT5G40650.1	7.0e-87	66.67	succinate dehydrogenase 2-2	[more]
AT3G27380.1	1.6e-86	65.81	succinate dehydrogenase 2-1	[more]
AT3G27380.2	1.6e-86	65.81	succinate dehydrogenase 2-1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025192	Succinate dehydogenase/fumarate reductase N-terminal	PFAM	PF13085	Fer2_3	coord: 53..158 e-value: 8.2E-31 score: 106.2
IPR009051	Alpha-helical ferredoxin	GENE3D	1.10.1060.10		coord: 154..288 e-value: 2.2E-44 score: 152.4
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 41..153 e-value: 2.1E-39 score: 135.8
IPR004489	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	TIGRFAM	TIGR00384	TIGR00384	coord: 55..278 e-value: 3.7E-78 score: 260.0
None	No IPR available	PFAM	PF13534	Fer4_17	coord: 195..269 e-value: 3.1E-7 score: 30.9
None	No IPR available	PANTHER	PTHR11921	SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN	coord: 6..286
None	No IPR available	PANTHER	PTHR11921:SF40	SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT 3, MITOCHONDRIAL	coord: 6..286
None	No IPR available	SUPERFAMILY	46548	alpha-helical ferredoxin	coord: 155..281
IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	PROSITE	PS00198	4FE4S_FER_1	coord: 196..207
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 104..112
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 65..144 score: 8.639751
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 80..117 e-value: 0.00413752 score: 33.9076
IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	PROSITE	PS51379	4FE4S_FER_2	coord: 186..216 score: 7.508345
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 50..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G008020.1	CmaCh04G008020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045273	respiratory chain complex II
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0051538	3 iron, 4 sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008177	succinate dehydrogenase (ubiquinone) activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity