CmaCh04G007640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G007640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	dehydrin DHN1-like
Location	Cma_Chr04: 3882339 .. 3883409 (-)
RNA-Seq Expression	CmaCh04G007640
Synteny	CmaCh04G007640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGAAACTTGCTGAATTATTTGTCATCCATCCATCTCTGTTTTGTTTTTTGGGTTTTGAAAAATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCACGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGATACGGATCAGTATGGAAACCCGGTTCGGCGGGGCGGGGAGTACGGTGAACCGATCGGCACTGGTGGGACGTATGAGACTGGTGGCCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGTATACTTCGTCGCTCTGGAAGCTCCAGTAGTTCCAGCTCGGTAAAATTTAATGTTATATGATTACTTTCATACACCAGTGTAAAAGAAACGATTTTTGAGTTTATAATAATAATAATAATAATAATGAGGTTGAAATTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCAGGGCATCATGACACGGCGCAGCAGCCACAGGCAACATCAACCACCACACCTGGCGGGTACTCCTCGGTGGAGCACGGCGGCCAATACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGAGAGGCGTCGCCCACCATATCTGGGTGTAGATATGATATTAATAAAGTGATAGCTGTGCGTGTAATGGGGACTTGTGTAGTGTGAGAGTTGGTATGGCTAAATAACGAGGGAGCGTGGTGGTCGGTTTGTGGTTGCTGCGTGTATTATGTCATTTATGGGTTTGATATATGTACGTCTCGTTTGTGTTCATCTATCTTCTACTTGGCCTGTTTTACGTTTCAAATCTACCTTCTTTTCCAACCTATAATTGCTAGAATCATAACCCCATAATACAAGATCAAATCATCCTTACGGGGATTTGATGATCAATTCTAAGTAATTATAAGGATGTTGAGCATCATAAAATTTAATCATCCGTAGGGATTAATAAATTTACTACATTTGGAG

mRNA sequence

TCTGAAACTTGCTGAATTATTTGTCATCCATCCATCTCTGTTTTGTTTTTTGGGTTTTGAAAAATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCACGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGATACGGATCAGTATGGAAACCCGGTTCGGCGGGGCGGGGAGTACGGTGAACCGATCGGCACTGGTGGGACGTATGAGACTGGTGGCCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGTATACTTCGTCGCTCTGGAAGCTCCAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCAGGGCATCATGACACGGCGCAGCAGCCACAGGCAACATCAACCACCACACCTGGCGGGTACTCCTCGGTGGAGCACGGCGGCCAATACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGAGAGGCGTCGCCCACCATATCTGGGTGTAGATATGATATTAATAAAGTGATAGCTGTGCGTGTAATGGGGACTTGTGTAGTGTGAGAGTTGGTATGGCTAAATAACGAGGGAGCGTGGTGGTCGGTTTGTGGTTGCTGCGTGTATTATGTCATTTATGGGTTTGATATATGTACGTCTCGTTTGTGTTCATCTATCTTCTACTTGGCCTGTTTTACGTTTCAAATCTACCTTCTTTTCCAACCTATAATTGCTAGAATCATAACCCCATAATACAAGATCAAATCATCCTTACGGGGATTTGATGATCAATTCTAAGTAATTATAAGGATGTTGAGCATCATAAAATTTAATCATCCGTAGGGATTAATAAATTTACTACATTTGGAG

Coding sequence (CDS)

ATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCACGGGACCGGTCAGCACGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGATACGGATCAGTATGGAAACCCGGTTCGGCGGGGCGGGGAGTACGGTGAACCGATCGGCACTGGTGGGACGTATGAGACTGGTGGCCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGTATACTTCGTCGCTCTGGAAGCTCCAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCAGGGCATCATGACACGGCGCAGCAGCCACAGGCAACATCAACCACCACACCTGGCGGGTACTCCTCGGTGGAGCACGGCGGCCAATACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGA

Protein sequence

MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN

Homology

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BLAST of CmaCh04G007640 vs. ExPASy Swiss-Prot
Match: P30185 (Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.4e-25
Identity = 91/176 (51.70%), Postives = 107/176 (60.80%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G         G       YG   +  G  G+  GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGGYGTG---GGGGATGGQGYGTGGQGYGSGGQGYGTGGQ 72

Query: 68  -YETG-GHGGVGYGG-----GHQQQHKEH----GGILRRSGSSSSSSSSEDDGHGGRRKK 127
            Y TG G  G G GG     G +Q HKE     GG+L RSG S SSSSSEDDG GGRRKK
Sbjct: 73  GYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG-SGSSSSSEDDGQGGRRKK 132

Query: 128 GLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ-YEKKGIMDKIKEKLPG 171
           G+ +KIKEKLPGHHD + Q QA       GY +  +GG+ +EKKG+MDKIKEKLPG
Sbjct: 133 GITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 183

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BLAST of CmaCh04G007640 vs. ExPASy Swiss-Prot
Match: P12950 (Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-22
Identity = 87/165 (52.73%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 35  HHRTGEFRDTDQYGNPV-----RRGGEYGEPIGTGGTYETGGHGGVGYGGGH-QQQHKEH 94
           H RTG     DQYGNPV       GG       TGG  + G HGG G GGG  Q   +EH
Sbjct: 11  HGRTGH---VDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGEHGGAGMGGGQFQPAREEH 70

Query: 95  --GGILRRSGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGY 154
             GGIL RSG SSSSSSSEDDG GGRRKKG+KEKIKEKLPG H   +  Q  + TT G Y
Sbjct: 71  KTGGILHRSG-SSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGH---KDDQHATATTGGAY 130

Query: 155 SSVEH-----------GGQY--------EKKGIMDKIKEKLPGHN 173
               H           GG Y        EKKGIMDKIKEKLPG +
Sbjct: 131 GQQGHTGSAYGQQGHTGGAYATGTEGTGEKKGIMDKIKEKLPGQH 168

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BLAST of CmaCh04G007640 vs. ExPASy Swiss-Prot
Match: Q2R4Z5 (Dehydrin Rab16B OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16B PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.6e-22
Identity = 79/150 (52.67%), Postives = 86/150 (57.33%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYG----EPIGTGGTYETGGHGGVGYGGGHQQQHKEH--GGILRRSGSS 104
           D YGNPV   G+YG     P G  G    GGH G G GG  Q   ++H  GGIL RSGSS
Sbjct: 16  DVYGNPV-GAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDHKTGGILHRSGSS 75

Query: 105 SSSSSSEDDGHGGRRKKGLKEKIKEKLPG-----HHDT-----------AQQPQATSTTT 164
           SSSSSSEDDG GGRRKKG+KEKIKEKLPG     +H              QQ  A  T  
Sbjct: 76  SSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNHQQQQMMGNTGGAYGQQGHAGMTGA 135

Query: 165 PGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
             G    E+G   EKKG MDKIKEKLPG +
Sbjct: 136 GTGVHGAEYGNAGEKKGFMDKIKEKLPGQH 164

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BLAST of CmaCh04G007640 vs. ExPASy Swiss-Prot
Match: A2ZDX8 (Dehydrin Rab16B OS=Oryza sativa subsp. indica OX=39946 GN=RAB16B PE=2 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-21
Identity = 78/150 (52.00%), Postives = 87/150 (58.00%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYG----EPIGTGGTYETGGHGGVGYGGGHQ--QQHKEHGGILRRSGSS 104
           D YGNPV   G+YG     P G  G    GGH G G GG  Q  ++ ++ GGIL RSGSS
Sbjct: 16  DVYGNPV-GAGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDRKTGGILHRSGSS 75

Query: 105 SSSSSSEDDGHGGRRKKGLKEKIKEKLP-GHHDTAQQPQATSTTTPGGYS---------- 164
           SSSSSSEDDG GGRRKKG+KEKIKEKLP G+    QQ Q     T G Y           
Sbjct: 76  SSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNQQQQQMMGNTGGAYGQQGHAGMTGA 135

Query: 165 -----SVEHGGQYEKKGIMDKIKEKLPGHN 173
                  E+G   EKKG MDKIKEKLPG +
Sbjct: 136 GTGVHGAEYGNAGEKKGFMDKIKEKLPGQH 164

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BLAST of CmaCh04G007640 vs. ExPASy Swiss-Prot
Match: Q2R4Z7 (Dehydrin Rab16C OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16C PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.6e-21
Identity = 79/156 (50.64%), Postives = 88/156 (56.41%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYGEPIGTGGTYETGGHGGVGYGGGH----------QQQHKEHGGILRR 104
           D YGNPV   G+Y    G G T   GGHG +G GG H          +++HK  GGIL R
Sbjct: 16  DVYGNPV--AGQY----GGGATAPGGGHGVMGMGGHHAGAGGQFQPVKEEHKT-GGILHR 75

Query: 105 SGSSSSSSSSEDDGHGGRRKKGLKEKIKEKLP-GHHDTAQQPQATSTTTPGGYS------ 164
           SGSSSSSSSSEDDG GGRRKKG+KEKIKEKLP G+    QQ Q     T G Y       
Sbjct: 76  SGSSSSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNQQQQQMMGNTGGAYGQQGHAG 135

Query: 165 -----------SVEHGGQYEKKGIMDKIKEKLPGHN 173
                        E+G   EKKG MDKIKEKLPG +
Sbjct: 136 MTGAGTGTGVHGAEYGNTGEKKGFMDKIKEKLPGQH 164

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BLAST of CmaCh04G007640 vs. ExPASy TrEMBL
Match: A0A6J1J0Z6 (dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.5e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120
           IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120

Query: 121 IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN
Sbjct: 121 IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of CmaCh04G007640 vs. ExPASy TrEMBL
Match: A0A6J1FRT8 (dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.6e-89
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQ VDPHHRTGEFR+TDQYGNPVRRGGEYG+P
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120
           IGTGGTYETGGHGGVGYGGGHQQQHKEHGG+LRRSGSSSSSSSSEDDGHGGRRKKGLKEK
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120

Query: 121 IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           IKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLPGHN
Sbjct: 121 IKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of CmaCh04G007640 vs. ExPASy TrEMBL
Match: A0A5D3CYN8 (Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.5e-63
Identity = 136/180 (75.56%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   MSHFQS-GTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGE-YG 60
           M+H+QS GTDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFR+TDQYGNPVRR  + +G
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 61  EPI------GTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGR 120
            P+      GTGGTYET G+GG GYGGGH QQHKEHGGIL RSG SSSSSSSEDDGHGGR
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSG-SSSSSSSEDDGHGGR 120

Query: 121 RKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           RKKGLKEK+KEKLPG H    + QA STTTPGGY+S EHGGQ+EKKGIM+KIKEKLPGH+
Sbjct: 121 RKKGLKEKVKEKLPGRHH--HEGQAVSTTTPGGYASAEHGGQHEKKGIMEKIKEKLPGHH 177

[Close]

BLAST of CmaCh04G007640 vs. ExPASy TrEMBL
Match: A0A1S3BTX2 (dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.5e-63
Identity = 136/180 (75.56%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   MSHFQS-GTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGE-YG 60
           M+H+QS GTDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFR+TDQYGNPVRR  + +G
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 61  EPI------GTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGR 120
            P+      GTGGTYET G+GG GYGGGH QQHKEHGGIL RSG SSSSSSSEDDGHGGR
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSG-SSSSSSSEDDGHGGR 120

Query: 121 RKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           RKKGLKEK+KEKLPG H    + QA STTTPGGY+S EHGGQ+EKKGIM+KIKEKLPGH+
Sbjct: 121 RKKGLKEKVKEKLPGRHH--HEGQAVSTTTPGGYASAEHGGQHEKKGIMEKIKEKLPGHH 177

[Close]

BLAST of CmaCh04G007640 vs. ExPASy TrEMBL
Match: A0A0A0KWM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 9.5e-63
Identity = 135/180 (75.00%), Postives = 151/180 (83.89%), Query Frame = 0


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ+ DP  RTGEFR+TDQYGNP RR  + +G
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 60

Query: 61  EPI------GTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGR 120
            P+      GTGGTYET G+GG GYGGGH QQHKEHGGIL RSG SSSSSSSEDDGHGGR
Sbjct: 61  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSG-SSSSSSSEDDGHGGR 120

Query: 121 RKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           RKKGLKEK+KEKLPGHH    + QA STTTPGGY+S E+GGQ+EKKGIM+KIKEKLPGH+
Sbjct: 121 RKKGLKEKVKEKLPGHH--RHEEQAVSTTTPGGYTSAEYGGQHEKKGIMEKIKEKLPGHH 177

[Close]

BLAST of CmaCh04G007640 vs. NCBI nr
Match: XP_022983036.1 (dehydrin DHN1-like [Cucurbita maxima])

HSP 1 Score: 348.6 bits (893), Expect = 3.1e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120
           IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120

Query: 121 IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN
Sbjct: 121 IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of CmaCh04G007640 vs. NCBI nr
Match: XP_022942609.1 (dehydrin Rab16B-like [Cucurbita moschata])

HSP 1 Score: 338.6 bits (867), Expect = 3.2e-89
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQ VDPHHRTGEFR+TDQYGNPVRRGGEYG+P
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60

Query: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120
           IGTGGTYETGGHGGVGYGGGHQQQHKEHGG+LRRSGSSSSSSSSEDDGHGGRRKKGLKEK
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLKEK 120

Query: 121 IKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           IKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLPGHN
Sbjct: 121 IKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 172

[Close]

BLAST of CmaCh04G007640 vs. NCBI nr
Match: KAG6600589.1 (Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031229.1 Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.1 bits (858), Expect = 3.5e-88
Identity = 168/183 (91.80%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFR+TDQYGNPVRRGGEYG+P
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRETDQYGNPVRRGGEYGDP 60

Query: 61  IGTGGTYETGGHGGV-----------GYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGH 120
           IGTGGTYETGGHGGV           GYGGGHQQQHKEHGG+LRRSGSSSSSSSSEDDGH
Sbjct: 61  IGTGGTYETGGHGGVGYGGGHQQQHMGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGH 120

Query: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLP 173
           GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLP
Sbjct: 121 GGRRKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLP 180

[Close]

BLAST of CmaCh04G007640 vs. NCBI nr
Match: XP_023550338.1 (dehydrin Rab18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.5 bits (846), Expect = 8.7e-87
Identity = 164/175 (93.71%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHR---TGEFRDTDQYGNPVRRGGEY 60
           MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHR   TGEFR+TDQYGNP+RRGGEY
Sbjct: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGGTGEFRETDQYGNPIRRGGEY 60

Query: 61  GEPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGRRKKGL 120
           G+ IGTGGTYETGGHGGVGYGGGH QQHKEHGG+LRRSGSSSSSSSSEDDGHGGRRKKGL
Sbjct: 61  GDRIGTGGTYETGGHGGVGYGGGHHQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           KEKIKEKLPGHHDTAQQP ATSTTTPGGYSSVEHGGQ+EKKGIMDKIKEKLPGHN
Sbjct: 121 KEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKEKLPGHN 175

[Close]

BLAST of CmaCh04G007640 vs. NCBI nr
Match: XP_038902571.1 (dehydrin Xero 1-like [Benincasa hispida])

HSP 1 Score: 258.1 bits (658), Expect = 5.5e-65
Identity = 136/175 (77.71%), Postives = 151/175 (86.29%), Query Frame = 0


Query: 1   MSHFQSGTDQYGNPVRQTDEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEP 60
           M+H+QSGTDQYGNP+RQTDEYGNVI  T Q+ DP  RTGEFR+TDQYGNPV R  E+G P
Sbjct: 1   MAHYQSGTDQYGNPIRQTDEYGNVISDTAQYGDPLRRTGEFRETDQYGNPVHRTDEFGNP 60

Query: 61  I--GTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGG-RRKKGL 120
           I  GTGGTYETGG+GG GYGG H QQHKEHGGIL RSG SSSSSSSEDDGHGG RRKKGL
Sbjct: 61  ISTGTGGTYETGGYGGTGYGGEHHQQHKEHGGILHRSG-SSSSSSSEDDGHGGRRRKKGL 120

Query: 121 KEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           KEK+KEK+PGHH    +PQA STTTPGGYSS ++GGQ+EKKGIM+KIKEKLPGH+
Sbjct: 121 KEKVKEKMPGHH---HEPQAMSTTTPGGYSSAQYGGQHEKKGIMEKIKEKLPGHH 171

[Close]

BLAST of CmaCh04G007640 vs. TAIR 10
Match: AT5G66400.1 (Dehydrin family protein )

HSP 1 Score: 115.9 bits (289), Expect = 3.1e-26
Identity = 91/176 (51.70%), Postives = 107/176 (60.80%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G         G       YG   +  G  G+  GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGGYGTG---GGGGATGGQGYGTGGQGYGSGGQGYGTGGQ 72

Query: 68  -YETG-GHGGVGYGG-----GHQQQHKEH----GGILRRSGSSSSSSSSEDDGHGGRRKK 127
            Y TG G  G G GG     G +Q HKE     GG+L RSG S SSSSSEDDG GGRRKK
Sbjct: 73  GYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSG-SGSSSSSEDDGQGGRRKK 132

Query: 128 GLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ-YEKKGIMDKIKEKLPG 171
           G+ +KIKEKLPGHHD + Q QA       GY +  +GG+ +EKKG+MDKIKEKLPG
Sbjct: 133 GITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 183

[Close]

BLAST of CmaCh04G007640 vs. TAIR 10
Match: AT5G66400.2 (Dehydrin family protein )

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 90/176 (51.14%), Postives = 106/176 (60.23%), Query Frame = 0


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQHVDPHHRTGEFRDTDQYGNPVRRGGEYGEPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G         G       YG   +  G  G+  GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGGYGTG---GGGGATGGQGYGTGGQGYGSGGQGYGTGGQ 72

Query: 68  -YETG-GHGGVGYGG-----GHQQQHKEH----GGILRRSGSSSSSSSSEDDGHGGRRKK 127
            Y TG G  G G GG     G +Q HKE     GG+L RSGS SSSSS  DDG GGRRKK
Sbjct: 73  GYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSSSS--DDGQGGRRKK 132

Query: 128 GLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQ-YEKKGIMDKIKEKLPG 171
           G+ +KIKEKLPGHHD + Q QA       GY +  +GG+ +EKKG+MDKIKEKLPG
Sbjct: 133 GITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKEKLPG 182

[Close]

BLAST of CmaCh04G007640 vs. TAIR 10
Match: AT2G21490.1 (dehydrin LEA )

HSP 1 Score: 88.6 bits (218), Expect = 5.4e-18
Identity = 77/180 (42.78%), Postives = 94/180 (52.22%), Query Frame = 0


Query: 9   DQYGNPVRQTDEYGN-VIHGTGQHVDPHHRTGEFRDTDQY---------GNPVRRGGE-- 68
           D+ GNP+  TD  GN ++  T +H +P + TG    T Q+          +P    GE  
Sbjct: 6   DEKGNPIHLTDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHKESTTSDIAEHPTSTVGETH 65

Query: 69  -YGEPIGTG---GTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSSEDDGHGGR 128
               P G G       TG   G G     QQ H      LRRSG SSSSSSSEDDG GGR
Sbjct: 66  PAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSG-SSSSSSSEDDGQGGR 125

Query: 129 RKKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMDKIKEKLPGHN 173
           RKK +KEKIKEK        +Q  AT+TTT    +   H    EKKGI++KIK+KLPGH+
Sbjct: 126 RKKSIKEKIKEKFGSGKHKDEQTPATATTTGPATTDQPH----EKKGILEKIKDKLPGHH 180

[Close]

BLAST of CmaCh04G007640 vs. TAIR 10
Match: AT3G50980.1 (dehydrin xero 1 )

HSP 1 Score: 87.8 bits (216), Expect = 9.2e-18
Identity = 68/128 (53.12%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 45  DQYGNPVRRGGEYGEPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGILRRSGSSSSSSSS 104
           DQ+GNP         P  TG     GG   V  GGG         G+L RSG SSSSSSS
Sbjct: 18  DQFGNPF--------PATTGAYGTAGGAPAVAEGGG-------LSGMLHRSG-SSSSSSS 77

Query: 105 EDDGHGGRR--KKGLKEKIKEKLPGHHDTAQQPQATSTTTPGGYSSVEHGGQYEKKGIMD 164
           EDDG GGRR  KKG+ EKIKEKLPGHHD+ +     STTT     +V H    EKKG+M+
Sbjct: 78  EDDGLGGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTTAYDTGTVHH----EKKGMME 125

Query: 165 KIKEKLPG 171
           KIKEKLPG
Sbjct: 138 KIKEKLPG 125

[Close]

BLAST of CmaCh04G007640 vs. TAIR 10
Match: AT1G20440.1 (cold-regulated 47 )

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-12
Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 92  LRRSGSSSSSSSSEDDG----------HGGRRKKGLKEKIKEKLPGHHD-TAQQ--PQAT 151
           L RS SSSSSSS E+             G   KKGL EKIKEKLPGHHD TA+   P +T
Sbjct: 104 LHRSNSSSSSSSDEEGEEKKEKKKKIVEGEEDKKGLVEKIKEKLPGHHDKTAEDDVPVST 163

Query: 152 STTTPGGYSSVEHG-GQYEKKGIMDKIKEKLPGHN 173
           +   P   S VEH   + EKKG+++KIKEKLPGH+
Sbjct: 164 TIPVPVSESVVEHDHPEEEKKGLVEKIKEKLPGHH 198

The following BLAST results are available for this feature:

BLAST of CmaCh04G007640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30185	4.4e-25	51.70	Dehydrin Rab18 OS=Arabidopsis thaliana OX=3702 GN=RAB18 PE=2 SV=1	[more]
P12950	3.5e-22	52.73	Dehydrin DHN1 OS=Zea mays OX=4577 GN=DHN1 PE=1 SV=2	[more]
Q2R4Z5	4.6e-22	52.67	Dehydrin Rab16B OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16B PE=2 SV=1	[more]
A2ZDX8	1.3e-21	52.00	Dehydrin Rab16B OS=Oryza sativa subsp. indica OX=39946 GN=RAB16B PE=2 SV=2	[more]
Q2R4Z7	6.6e-21	50.64	Dehydrin Rab16C OS=Oryza sativa subsp. japonica OX=39947 GN=RAB16C PE=2 SV=1	[more]

BLAST of CmaCh04G007640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0Z6	1.5e-92	100.00	dehydrin DHN1-like OS=Cucurbita maxima OX=3661 GN=LOC111481701 PE=3 SV=1	[more]
A0A6J1FRT8	1.6e-89	96.51	dehydrin Rab16B-like OS=Cucurbita moschata OX=3662 GN=LOC111447593 PE=3 SV=1	[more]
A0A5D3CYN8	2.5e-63	75.56	Dehydrin DHN1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005140 ...	[more]
A0A1S3BTX2	2.5e-63	75.56	dehydrin DHN1 OS=Cucumis melo OX=3656 GN=LOC103493214 PE=3 SV=1	[more]
A0A0A0KWM9	9.5e-63	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G045040 PE=3 SV=1	[more]

BLAST of CmaCh04G007640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983036.1	3.1e-92	100.00	dehydrin DHN1-like [Cucurbita maxima]	[more]
XP_022942609.1	3.2e-89	96.51	dehydrin Rab16B-like [Cucurbita moschata]	[more]
KAG6600589.1	3.5e-88	91.80	Dehydrin Xero 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031229.1 D...	[more]
XP_023550338.1	8.7e-87	93.71	dehydrin Rab18-like [Cucurbita pepo subsp. pepo]	[more]
XP_038902571.1	5.5e-65	77.71	dehydrin Xero 1-like [Benincasa hispida]	[more]

BLAST of CmaCh04G007640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66400.1	3.1e-26	51.70	Dehydrin family protein	[more]
AT5G66400.2	1.2e-25	51.14	Dehydrin family protein	[more]
AT2G21490.1	5.4e-18	42.78	dehydrin LEA	[more]
AT3G50980.1	9.2e-18	53.13	dehydrin xero 1	[more]
AT1G20440.1	4.4e-12	52.63	cold-regulated 47	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 8..171 e-value: 1.2E-40 score: 139.6
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 6..31
IPR000167	Dehydrin	PANTHER	PTHR33346	DEHYDRIN XERO 2-RELATED	coord: 37..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..172
None	No IPR available	PANTHER	PTHR33346:SF29	DEHYDRIN RAB18	coord: 6..31
None	No IPR available	PANTHER	PTHR33346:SF29	DEHYDRIN RAB18	coord: 37..171
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 120..127
IPR030513	Dehydrin, conserved site	PROSITE	PS00823	DEHYDRIN_2	coord: 163..170
IPR030513	Dehydrin, conserved site	PROSITE	PS00315	DEHYDRIN_1	coord: 100..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G007640.1	CmaCh04G007640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009631	cold acclimation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009415	response to water
cellular_component	GO:0005829	cytosol