CmaCh04G007090 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G007090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 3590146 .. 3590849 (+)
RNA-Seq ExpressionCmaCh04G007090
SyntenyCmaCh04G007090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATCCGGAAAAATCTCCGACTCGGCACGGCGGGTATCTTTACCGGTTGAAGCAGTTTCAGGGGATTTTTCATTCGTCGACGGCGATGGGCAACGGAGAACGGAAGTCGGAGAAGAGAGATTGTCGTTCGTCTCCTCAACGGAGACATTGCTGGAGCTCACTGCCGGCGGAGGACTGAAGTTAGTTTGGGCGGTGGGTCCACGGAGTTGAATGGCAGCGTTGTCGTACACCATAGCGGCTTCTTCAGCCGTATTGTAGGTACCTAACCAGATGCGTACACGTCGCAAAGGATCTCTAATCTCAGCCGCCCATTTTCCCCACGGCCGTTGCCTCACGCCGCGGAATTTCTTAGTTCCCGGCTGTAGCGGCTTCCGTAAATTCGATTTCCCGGTGGTGGACTTCTTCCGGTCTCTTCTCCCCAAGGCCTCGATCGTAATCTCGGTAATAAATTTCTTGACTCGGCGGGAGACGTGTTGTTCTTCCTTTTCATCACTAGAAGAATCAGTGGCATCTTCGTCAGTTACAGAGATCCTGACGAGCTTAGGCGCCATTAATGGCGGAGAAAAGTGCTTGGTGTGGTTTCGATGTTCAGAGTACTTAACCGAAGGTACAAGAAGACTGGAGAACAAATCCATTCCTTCCATGAGAGAAACAGAGAAGAAATTCCTTCACCTGTCAGATTCTGAGAAACACCATTGA

mRNA sequence

ATGAAAAATCCGGAAAAATCTCCGACTCGGCACGGCGGGGGATTTTTCATTCGTCGACGGCGATGGGCAACGGAGAACGGAAGTCGGAGAAGAGAGATTGTCGTTCGTCTCCTCAACGGAGACATTGCTGGAGCTCACTGCCGGCGGAGGACTGAAGTTAGTTTGGGCGGTGGGTCCACGGAGTTGAATGGCAGCGTTGTCGTACACCATAGCGGCTTCTTCAGCCGTATTGTACCTAACCAGATGCGTACACGTCGCAAAGGATCTCTAATCTCAGCCGCCCATTTTCCCCACGGCCGTTGCCTCACGCCGCGGAATTTCTTAGTTCCCGGCTGTAGCGGCTTCCGTAAATTCGATTTCCCGGTGGTGGACTTCTTCCGGTCTCTTCTCCCCAAGGCCTCGATCGTAATCTCGGTAATAAATTTCTTGACTCGGCGGGAGACGTGTTGTTCTTCCTTTTCATCACTAGAAGAATCAGTGGCATCTTCGTCAGTTACAGAGATCCTGACGAGCTTAGGCGCCATTAATGGCGGAGAAAAGTGCTTGGTGTGGTTTCGATGTTCAGAGTACTTAACCGAAGGTACAAGAAGACTGGAGAACAAATCCATTCCTTCCATGAGAGAAACAGAGAAGAAATTCCTTCACCTGTCAGATTCTGAGAAACACCATTGA

Coding sequence (CDS)

ATGAAAAATCCGGAAAAATCTCCGACTCGGCACGGCGGGGGATTTTTCATTCGTCGACGGCGATGGGCAACGGAGAACGGAAGTCGGAGAAGAGAGATTGTCGTTCGTCTCCTCAACGGAGACATTGCTGGAGCTCACTGCCGGCGGAGGACTGAAGTTAGTTTGGGCGGTGGGTCCACGGAGTTGAATGGCAGCGTTGTCGTACACCATAGCGGCTTCTTCAGCCGTATTGTACCTAACCAGATGCGTACACGTCGCAAAGGATCTCTAATCTCAGCCGCCCATTTTCCCCACGGCCGTTGCCTCACGCCGCGGAATTTCTTAGTTCCCGGCTGTAGCGGCTTCCGTAAATTCGATTTCCCGGTGGTGGACTTCTTCCGGTCTCTTCTCCCCAAGGCCTCGATCGTAATCTCGGTAATAAATTTCTTGACTCGGCGGGAGACGTGTTGTTCTTCCTTTTCATCACTAGAAGAATCAGTGGCATCTTCGTCAGTTACAGAGATCCTGACGAGCTTAGGCGCCATTAATGGCGGAGAAAAGTGCTTGGTGTGGTTTCGATGTTCAGAGTACTTAACCGAAGGTACAAGAAGACTGGAGAACAAATCCATTCCTTCCATGAGAGAAACAGAGAAGAAATTCCTTCACCTGTCAGATTCTGAGAAACACCATTGA

Protein sequence

MKNPEKSPTRHGGGFFIRRRRWATENGSRRREIVVRLLNGDIAGAHCRRRTEVSLGGGSTELNGSVVVHHSGFFSRIVPNQMRTRRKGSLISAAHFPHGRCLTPRNFLVPGCSGFRKFDFPVVDFFRSLLPKASIVISVINFLTRRETCCSSFSSLEESVASSSVTEILTSLGAINGGEKCLVWFRCSEYLTEGTRRLENKSIPSMRETEKKFLHLSDSEKHH
Homology
[Close]
BLAST of CmaCh04G007090 vs. ExPASy TrEMBL
Match: A0A328CYC5 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_003961 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 36/64 (56.25%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 48  RRRTEVSLGGGSTELNGSVVVHHSGFFSR-IVPNQMRTRRKGSLISAAHFPHGRCLTPRN 107
           RR +E+      T+L    VV   GF SR I PNQ  T R GS ISAAHFP GR LTPRN
Sbjct: 24  RRDSEIGQRIHPTDL----VVDRRGFLSRFIYPNQTLTCRVGSRISAAHFPQGRRLTPRN 83

Query: 108 FLVP 111
           FL P
Sbjct: 84  FLTP 83

[Close]
BLAST of CmaCh04G007090 vs. NCBI nr
Match: KAF3524663.1 (hypothetical protein F2Q69_00050595 [Brassica cretica])

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-06
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 0 

Query: 78  VPNQMRTRR----KGSLISAAHFPHGRCLTPRNFLVPGCSGFRKFDFPVVDFFR------ 137
           VP+Q R+RR    +  LISAAHFPHG CLTPRNF +        F F  V   R      
Sbjct: 103 VPSQRRSRRPLRARPHLISAAHFPHGLCLTPRNFFL--------FFFSAVAALRISGGIL 162

Query: 138 ---------SLLPKA--SIVISVINFLTRR------ETCCSSFSSLEESVASSSVTEILT 171
                    +LL ++  SI IS+     RR      E+C +S S LEESVAS+SV EILT
Sbjct: 163 ILNRVLQTSNLLSESEESITISLTRRFPRRRAWDASESCSASSSLLEESVASASVNEILT 214

[Close]
BLAST of CmaCh04G007090 vs. NCBI nr
Match: RAL37039.1 (hypothetical protein DM860_003961 [Cuscuta australis])

HSP 1 Score: 58.5 bits (140), Expect = 8.3e-05
Identity = 36/64 (56.25%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 48  RRRTEVSLGGGSTELNGSVVVHHSGFFSR-IVPNQMRTRRKGSLISAAHFPHGRCLTPRN 107
           RR +E+      T+L    VV   GF SR I PNQ  T R GS ISAAHFP GR LTPRN
Sbjct: 24  RRDSEIGQRIHPTDL----VVDRRGFLSRFIYPNQTLTCRVGSRISAAHFPQGRRLTPRN 83

Query: 108 FLVP 111
           FL P
Sbjct: 84  FLTP 83

The following BLAST results are available for this feature:
BLAST of CmaCh04G007090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G007090 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A328CYC54.0e-0556.25Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_003961 PE=4 SV=1[more]
BLAST of CmaCh04G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF3524663.11.5e-0643.33hypothetical protein F2Q69_00050595 [Brassica cretica][more]
RAL37039.18.3e-0556.25hypothetical protein DM860_003961 [Cuscuta australis][more]
BLAST of CmaCh04G007090 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G007090.1CmaCh04G007090.1mRNA