CmaCh04G005930 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G005930
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPlant intracellular Ras-group-related LRR protein 3
LocationCma_Chr04: 2990144 .. 2991158 (-)
RNA-Seq ExpressionCmaCh04G005930
SyntenyCmaCh04G005930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCGCATATCGCCCGCAGGCCTTTCCCCGGCGCCTCAACCTATCGGAACCCTCTTTAGCTACCACTTCCAGCGTCTCCACCAATGATTCCACGTTCGGAGCGAAAAGGAATCCGTACTCATCATCAACAACAATGGTGCCCTTTATGCTCGGAAACCTTGACGCCATTACAGGTTTCCCGCTTGCCATAGCCTCCATCAGAGTCAGGTCCAATCCCTGTGGCCGTAGCGTTGGATTCACGAAGATGTCGATCGAATTGTAGAAAGCCCTAAGTTCTGACGGACTCATCGATCCTAAAACCAGAACTCGAGGACCTAGATCCCTGTACCGCTGTTCCCATGGTCCTGCTCCGGCGACGATCAGGTAGATGTCCGGATGCTGCTCTGTGATGATGGAGAAAGCTTCGTGAAGTAGCGGATGGCCTTTGTCTTTCACTAATCTTCCGGCGACTCCGAGGACTAGACTTGCGTTTCCAGGTATTCCGATTCGAGCCCTAAATTCTTGACCTAATTTGAAATCCTCGCCGAAATCGTCCTCGTCGACGCCATTGACGATCACATGGACTCTTCTGCTTGGAATTTGGTACACATCTCGGAGCATCTCTCCGCAACTGTCGCTAATCGCGACGTGGTGAGCGTAATTTTTGAAGAATCGGATCTCATTCAGTACCTTCGGGACATCGCCTTGAATATTCATGTTGAAGGCCGGCGACATCGGCTCGTTCGGCCGGCGGGCTAGGTCCTGGAATAAGTCCGATTGCAAGCTCTCTAGGGCAATCCCATGCCAAGAAACTGCGAGATTCGAGAGCTTTTTGGCTACTCCGTGAGGCAGTGCAACGCTTTCTGTGTGAACAACGTCGAATGGTTCTCGGTGGTTTTCTTCTTCATATTGCTCCCAAGCTTTGTTGTAGCGCCACCGGCCTGGTTCACCGTCGTGCCAATGGATGTACGGCGCTGAAGTTGCAGACGAGAGGTTTTGAACAACGCCATAATCGGGCGGTGGTGAGGTGA

mRNA sequence

ATGGACGCCGCATATCGCCCGCAGGCCTTTCCCCGGCGCCTCAACCTATCGGAACCCTCTTTAGCTACCACTTCCAGCGTCTCCACCAATGATTCCACGTTCGGAGCGAAAAGGAATCCGTACTCATCATCAACAACAATGGTGCCCTTTATGCTCGGAAACCTTGACGCCATTACAGGTTTCCCGCTTGCCATAGCCTCCATCAGAGTCAGGTCCAATCCCTGTGGCCGTAGCGTTGGATTCACGAAGATGTCGATCGAATTGCCGGCGACATCGGCTCGTTCGGCCGGCGGGCTAGGTCCTGGAATAAGTCCGATTGCAAGCTCTCTAGGGCAATCCCATGCCAAGAAACTGCGAGATTCGAGAGCTTTTTGGCTACTCCGTGAGGCAGTGCAACGCTTTCTGTGTGAACAACGTCGAATGGTTCTCGGTGGTTTTCTTCTTCATATTGCTCCCAAGCTTTGTTGTAGCGCCACCGGCCTGGTTCACCGTCGTGCCAATGGATGTACGGCGCTGAAGTTGCAGACGAGAGGTTTTGAACAACGCCATAATCGGGCGGTGGTGAGGTGA

Coding sequence (CDS)

ATGGACGCCGCATATCGCCCGCAGGCCTTTCCCCGGCGCCTCAACCTATCGGAACCCTCTTTAGCTACCACTTCCAGCGTCTCCACCAATGATTCCACGTTCGGAGCGAAAAGGAATCCGTACTCATCATCAACAACAATGGTGCCCTTTATGCTCGGAAACCTTGACGCCATTACAGGTTTCCCGCTTGCCATAGCCTCCATCAGAGTCAGGTCCAATCCCTGTGGCCGTAGCGTTGGATTCACGAAGATGTCGATCGAATTGCCGGCGACATCGGCTCGTTCGGCCGGCGGGCTAGGTCCTGGAATAAGTCCGATTGCAAGCTCTCTAGGGCAATCCCATGCCAAGAAACTGCGAGATTCGAGAGCTTTTTGGCTACTCCGTGAGGCAGTGCAACGCTTTCTGTGTGAACAACGTCGAATGGTTCTCGGTGGTTTTCTTCTTCATATTGCTCCCAAGCTTTGTTGTAGCGCCACCGGCCTGGTTCACCGTCGTGCCAATGGATGTACGGCGCTGAAGTTGCAGACGAGAGGTTTTGAACAACGCCATAATCGGGCGGTGGTGAGGTGA

Protein sequence

MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITGFPLAIASIRVRSNPCGRSVGFTKMSIELPATSARSAGGLGPGISPIASSLGQSHAKKLRDSRAFWLLREAVQRFLCEQRRMVLGGFLLHIAPKLCCSATGLVHRRANGCTALKLQTRGFEQRHNRAVVR
Homology
[Close]
BLAST of CmaCh04G005930 vs. ExPASy TrEMBL
Match: M5WB17 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa013104mg PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.1e-15
Identity = 69/168 (41.07%), Postives = 75/168 (44.64%), Query Frame = 0 

Query: 1   MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITG 60
           M+ AY   AFP    L  PS    S  S NDST G    PYSSSTT+VP MLGNLDAI G
Sbjct: 1   MEFAYSKHAFPLCAALFGPSFTANSKASNNDSTLGENIKPYSSSTTIVPLMLGNLDAIIG 60

Query: 61  FPLAIASIRVRSNPCGRSVGFTKMSIELPATSARSAGGLGPGISPIASSLGQSHAKKLRD 120
           FPL IAS  V S                          LG  +S  ASSLG  HA  L+ 
Sbjct: 61  FPLIIASGYVPS--------------------------LGRCMS--ASSLGLCHAMTLQG 120

Query: 121 SRAFWLLREAVQRFLCEQRRMVLGGFLLHIAPKLCCSATGLVHRRANG 169
                   E    F  E RR+   GF   I P  CC+A    H R NG
Sbjct: 121 LGGPGPANEEAPHFQSEPRRIFHVGFAPKIVPMPCCNAKSPAHPRGNG 140

[Close]
BLAST of CmaCh04G005930 vs. ExPASy TrEMBL
Match: A0A6A2X586 (Plant intracellular Ras-group-related LRR protein 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116996pilonHSYRG00171 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-08
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1  MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITG 60
          M+AAY    FP R +L  PSL T+S+ STNDST G   NP S    ++P MLGNLDA T 
Sbjct: 1  MEAAYSSGGFPLRASLVGPSLTTSSNASTNDSTLGENMNPNS----ILPLMLGNLDATTS 60

Query: 61 FPLAIASI 69
          FPL IASI
Sbjct: 61 FPLIIASI 64

[Close]
BLAST of CmaCh04G005930 vs. NCBI nr
Match: KAE8657196.1 (Plant intracellular Ras-group-related LRR protein 3 [Hibiscus syriacus])

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-08
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 0 

Query: 1  MDAAYRPQAFPRRLNLSEPSLATTSSVSTNDSTFGAKRNPYSSSTTMVPFMLGNLDAITG 60
          M+AAY    FP R +L  PSL T+S+ STNDST G   NP S    ++P MLGNLDA T 
Sbjct: 1  MEAAYSSGGFPLRASLVGPSLTTSSNASTNDSTLGENMNPNS----ILPLMLGNLDATTS 60

Query: 61 FPLAIASI 69
          FPL IASI
Sbjct: 61 FPLIIASI 64

The following BLAST results are available for this feature:
BLAST of CmaCh04G005930 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
M5WB178.1e-1541.07Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa013104mg PE=4 SV=1[more]
A0A6A2X5861.9e-0857.35Plant intracellular Ras-group-related LRR protein 3 OS=Hibiscus syriacus OX=1063... [more]
BLAST of CmaCh04G005930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8657196.14.0e-0857.35Plant intracellular Ras-group-related LRR protein 3 [Hibiscus syriacus][more]
BLAST of CmaCh04G005930 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G005930.1CmaCh04G005930.1mRNA