CmaCh04G004380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G004380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Serine carboxypeptidase-like 18
Location	Cma_Chr04: 2236896 .. 2237376 (+)
RNA-Seq Expression	CmaCh04G004380
Synteny	CmaCh04G004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGAATTTTGAGAAGGCCTTAAGAATCCGACGGAAACAACGAATAACCGTTGAAAGTGCGCCGTGGCCAGTGAATGGTAAACCTGTAATTTTAGCGTGAAACAAGGTCACTTGTTTACATTCATAAAATGGTGCACTACATGCGTACGTGTTTCTTCTATATATATGGAAGCTCTTCGCCACTGACAGAGTCCAAGACTCGGAAGCCATTCAATCTCACACCTCTTTCAACATAATTCCCCTTCATTTTCTTCTTCTTCCCTTCTTTGAAACCCTAATTCTGCAAAATTCCTGTTTCGATTCCCCTTCATTTGGAGATTTCAGCGGCTTCAATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATTGACAAGAGCGCGAACGTCAAGATTGAAATCCGTAGCCGAAAAGCTTGA

mRNA sequence

ATGTTGAAGAATTTTGAGAAGGCCTTAAGAATCCGACGGAAACAACGAATAACCGTTGAAAGTGCGCCGTGGCCAGTGAATGCGGCTTCAATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATTGACAAGAGCGCGAACGTCAAGATTGAAATCCGTAGCCGAAAAGCTTGA

Coding sequence (CDS)

ATGTTGAAGAATTTTGAGAAGGCCTTAAGAATCCGACGGAAACAACGAATAACCGTTGAAAGTGCGCCGTGGCCAGTGAATGCGGCTTCAATGGCGAATCAGCTCGGCAATTTGGTGGAATCCATAAAATCCAAGGTGAAGGCACTGAGGAAGTCGAAGAAATCGAAGAAGCCATACATAAAAATTGACAAGAGCGCGAACGTCAAGATTGAAATCCGTAGCCGAAAAGCTTGA

Protein sequence

MLKNFEKALRIRRKQRITVESAPWPVNAASMANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA

Homology

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BLAST of CmaCh04G004380 vs. ExPASy TrEMBL
Match: A0A6J1FTL0 (uncharacterized protein LOC111447190 OS=Cucurbita moschata OX=3662 GN=LOC111447190 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.9e-13
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 29 ASMANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          ASMANQLGNLVESIKSKVKALRKSKKSKKPYIK+DKSA+VKIEIRS+KA
Sbjct: 3  ASMANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKA 51

[Close]

BLAST of CmaCh04G004380 vs. ExPASy TrEMBL
Match: A0A803MC29 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.1e-10
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNL+E+IKSKV AL+K KKSKKPY+K+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLMETIKSKVNALKKRKKSKKPYLKMDKSASVKVEIRSRKA 47

[Close]

BLAST of CmaCh04G004380 vs. ExPASy TrEMBL
Match: G7K0Z0 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11439092 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVK+  K KK KKPYIK+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKSTLKMKKGKKPYIKMDKSASVKVEIRSRKA 47

[Close]

BLAST of CmaCh04G004380 vs. ExPASy TrEMBL
Match: A0A5D3E160 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00420 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.0e-09
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVKAL   KKSKKPYIK+DKS++VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKAL---KKSKKPYIKMDKSSSVKVEIRSRKA 44

[Close]

BLAST of CmaCh04G004380 vs. ExPASy TrEMBL
Match: A0A2K3M0M6 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g040398 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 6.0e-09
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKV++  K KK KKPY+K+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVRSTLKMKKRKKPYVKMDKSASVKVEIRSRKA 47

[Close]

BLAST of CmaCh04G004380 vs. NCBI nr
Match: XP_022941983.1 (uncharacterized protein LOC111447190 [Cucurbita moschata] >XP_022941984.1 uncharacterized protein LOC111447190 [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 29 ASMANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          ASMANQLGNLVESIKSKVKALRKSKKSKKPYIK+DKSA+VKIEIRS+KA
Sbjct: 3  ASMANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKA 51

[Close]

BLAST of CmaCh04G004380 vs. NCBI nr
Match: XP_023530681.1 (uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 30 SMANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          SMANQLGNLVESIKSKVKALRKSKKSKKPYIK+DKSA+VKIEIRSRKA
Sbjct: 4  SMANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSRKA 51

[Close]

BLAST of CmaCh04G004380 vs. NCBI nr
Match: KAG7030935.1 (hypothetical protein SDJN02_04972, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVKALRKSKKSKKPYIK+DKSA+VKIEIRS+KA
Sbjct: 1  MANQLGNLVESIKSKVKALRKSKKSKKPYIKMDKSASVKIEIRSQKA 47

[Close]

BLAST of CmaCh04G004380 vs. NCBI nr
Match: XP_021776102.1 (uncharacterized protein LOC110739932 [Chenopodium quinoa])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNL+E+IKSKV AL+K KKSKKPY+K+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLMETIKSKVNALKKRKKSKKPYLKMDKSASVKVEIRSRKA 47

[Close]

BLAST of CmaCh04G004380 vs. NCBI nr
Match: XP_003610640.1 (uncharacterized protein LOC11439092 [Medicago truncatula] >AES93598.1 hypothetical protein MTR_5g005330 [Medicago truncatula] >RHN53249.1 hypothetical protein MtrunA17_Chr5g0393861 [Medicago truncatula])

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-09
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRKA 78
          MANQLGNLVESIKSKVK+  K KK KKPYIK+DKSA+VK+EIRSRKA
Sbjct: 1  MANQLGNLVESIKSKVKSTLKMKKGKKPYIKMDKSASVKVEIRSRKA 47

[Close]

BLAST of CmaCh04G004380 vs. TAIR 10
Match: AT3G19660.1 (unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.0 bits (97), Expect = 2.6e-04
Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 31 MANQLGNLVESIKSKVKALRKSKKSKKPYIKIDKSANVKIEIRSRK 77
          M  QL +L+E+IKSKV  LRK KK+   YIK+DKS++V++ IR +K
Sbjct: 1  MGLQLESLMETIKSKVSLLRKKKKT---YIKMDKSSSVRVAIRRKK 43

The following BLAST results are available for this feature:

BLAST of CmaCh04G004380 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh04G004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FTL0	6.9e-13	93.88	uncharacterized protein LOC111447190 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A803MC29	7.1e-10	80.85	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
G7K0Z0	1.6e-09	82.98	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11439092 PE=4 SV=1	[more]
A0A5D3E160	6.0e-09	85.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2K3M0M6	6.0e-09	78.72	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g040398 PE=4 SV=1	[more]

BLAST of CmaCh04G004380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941983.1	1.4e-12	93.88	uncharacterized protein LOC111447190 [Cucurbita moschata] >XP_022941984.1 unchar...	[more]
XP_023530681.1	1.4e-12	95.83	uncharacterized protein LOC111793132 [Cucurbita pepo subsp. pepo]	[more]
KAG7030935.1	1.2e-11	93.62	hypothetical protein SDJN02_04972, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_021776102.1	1.5e-09	80.85	uncharacterized protein LOC110739932 [Chenopodium quinoa]	[more]
XP_003610640.1	3.3e-09	82.98	uncharacterized protein LOC11439092 [Medicago truncatula] >AES93598.1 hypothetic...	[more]

BLAST of CmaCh04G004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19660.1	2.6e-04	54.35	unknown protein; Has 16 Blast hits to 16 proteins in 6 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34563	BNACNNG33880D PROTEIN	coord: 29..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G004380.1	CmaCh04G004380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004180	carboxypeptidase activity