CmaCh04G003710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G003710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cyclin
Location	Cma_Chr04: 1851721 .. 1852866 (+)
RNA-Seq Expression	CmaCh04G003710
Synteny	CmaCh04G003710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACATTTCAATACAAAAAGCCAAGAAAAAAAAAAAAAACCTGAGCTGTACTTATTCTCCACCCTCTAGATAACTCAGAGCCAGCTGCAATTCCACCCAATTCAAGGCTTTTCAAAACCTCAACAACTTCGAGCTCCATCAATGGCAGACTTAGATCACCGTAATCAAATGGCCGTTCCAATTCCCAAAGTCATCACTTTCCTGTCGTCCCTTTTGCAGAGGGTGTCGGAGTCCAATGATCAAAGCCATGAGCTTCATAGCGCGGCTAAAGTTTCAGCCTTTCATGGCTTGACAAAGCCCACCATTTCGATCCAAACCTACTTGGAGAGGATATTTAAGTACGCTAATTGCAGCCCCAGCTGCTTCGTTGTGGCTTATGTTTATCTCGATCGGCTCGTTCAGCGCCACCCTTCTTTGCCCATTGATTCCTTCAATGTTCATCGGCTTCTCATTACCAGTGTTCTTGTTTCCGCCAAGTTCTTGGATGACTTGTAAGCTTTTTTTTCTTTTTTTCTTTTTTTAATTTGTTCAATTGGGTTCTAATTATTCCCAGTCTACTTGATTTTCGGGTCGAGTTCGGTCCCGGATCTCAGGTTTCGGGTCTCGGATTTCGATTCTTCTTCTTCATAGGGTTCGATAGAATATTAAATTTTTATGATTTTTTTTATTTTCAGGTGTTACAATAATGCCTACTATGCGAAAGTGGGTGGAATAAGCACGATGGAGATGAACCTTCTTGAAATCGATTTCTTATTTGGTTTAGGGTTCCAACTTAACGTGACACCGAACACTTTTCACACTTATTGTTCTTATCTCCGAGCGGAAGTGTTATCGACGCAATCCAATCTTCCGATCCCCATAAAATTTTATTCCTTTCCCGAAGATGAAGCGTCGCATAAAAAACAATTGATAGCTTAAATCAAATGAAATGATCGATCATATGCGATCGTGGCAAGGCACAACGGGCTCTCCCTTGGCGCTTAGTCGTTAAATTAGCTAGAAGTTTTTGAGGTGGGGATGTGGGCCTTTTGGGCTTAAATGTGGGCTTTTTTGGGCCCAAGAAGCCACCCTAATTTGCTTCTCTTGTAGTTGGACATTTTTGCCCTCCATGTCTATTGTGTAGAATTGTATTTTGGTTGTTTGTAA

mRNA sequence

ATACATTTCAATACAAAAAGCCAAGAAAAAAAAAAAAAACCTGAGCTGTACTTATTCTCCACCCTCTAGATAACTCAGAGCCAGCTGCAATTCCACCCAATTCAAGGCTTTTCAAAACCTCAACAACTTCGAGCTCCATCAATGGCAGACTTAGATCACCGTAATCAAATGGCCGTTCCAATTCCCAAAGTCATCACTTTCCTGTCGTCCCTTTTGCAGAGGGTGTCGGAGTCCAATGATCAAAGCCATGAGCTTCATAGCGCGGCTAAAGTTTCAGCCTTTCATGGCTTGACAAAGCCCACCATTTCGATCCAAACCTACTTGGAGAGGATATTTAAGTACGCTAATTGCAGCCCCAGCTGCTTCGTTGTGGCTTATGTTTATCTCGATCGGCTCGTTCAGCGCCACCCTTCTTTGCCCATTGATTCCTTCAATGTTCATCGGCTTCTCATTACCAGTGTTCTTGTTTCCGCCAAGTTCTTGGATGACTTGTGTTACAATAATGCCTACTATGCGAAAGTGGGTGGAATAAGCACGATGGAGATGAACCTTCTTGAAATCGATTTCTTATTTGGTTTAGGGTTCCAACTTAACGTGACACCGAACACTTTTCACACTTATTGTTCTTATCTCCGAGCGGAATTGGACATTTTTGCCCTCCATGTCTATTGTGTAGAATTGTATTTTGGTTGTTTGTAA

Coding sequence (CDS)

ATGGCAGACTTAGATCACCGTAATCAAATGGCCGTTCCAATTCCCAAAGTCATCACTTTCCTGTCGTCCCTTTTGCAGAGGGTGTCGGAGTCCAATGATCAAAGCCATGAGCTTCATAGCGCGGCTAAAGTTTCAGCCTTTCATGGCTTGACAAAGCCCACCATTTCGATCCAAACCTACTTGGAGAGGATATTTAAGTACGCTAATTGCAGCCCCAGCTGCTTCGTTGTGGCTTATGTTTATCTCGATCGGCTCGTTCAGCGCCACCCTTCTTTGCCCATTGATTCCTTCAATGTTCATCGGCTTCTCATTACCAGTGTTCTTGTTTCCGCCAAGTTCTTGGATGACTTGTGTTACAATAATGCCTACTATGCGAAAGTGGGTGGAATAAGCACGATGGAGATGAACCTTCTTGAAATCGATTTCTTATTTGGTTTAGGGTTCCAACTTAACGTGACACCGAACACTTTTCACACTTATTGTTCTTATCTCCGAGCGGAATTGGACATTTTTGCCCTCCATGTCTATTGTGTAGAATTGTATTTTGGTTGTTTGTAA

Protein sequence

MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAELDIFALHVYCVELYFGCL

Homology

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BLAST of CmaCh04G003710 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 7.5e-63
Identity = 120/171 (70.18%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHS-AAKVSAFHGLTKPTISIQT 60
           MA+L++ + M+    K+I FLSSLL+RV+ESND +  + + + +VS FHGL++PTI+IQ+
Sbjct: 1   MAELENPSVMS----KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQS 60

Query: 61  YLERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCY 120
           YLERIFKYANCSPSCFVVAYVYLDR   R PSLPI+SFNVHRLLITSV+V+AKFLDDL Y
Sbjct: 61  YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 120

Query: 121 NNAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAELDI 171
           NNAYYAKVGGIST EMN LE+DFLFGLGF+LNVTPNTF+ Y SYL+ E+ +
Sbjct: 121 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

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BLAST of CmaCh04G003710 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.3e-58
Identity = 108/160 (67.50%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 10  MAVPIPKVITFLSSLLQRVSESNDQ-SHELHSAAKVSAFHGLTKPTISIQTYLERIFKYA 69
           MA  +P VIT +SSLLQRVSE+ND  S       ++SAF+ +TKP+ISI++Y+ERIFKYA
Sbjct: 16  MAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYA 75

Query: 70  NCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVG 129
           +CS SC++VAY+YLDR +Q+ P LPIDS NVHRL+ITSVLVSAKF+DDLCYNNA+YAKVG
Sbjct: 76  DCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVG 135

Query: 130 GISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           GI+T EMNLLE+DFLFG+GFQLNVT +T++ YCS L+ E+
Sbjct: 136 GITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREM 175

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BLAST of CmaCh04G003710 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.8e-56
Identity = 104/164 (63.41%), Postives = 131/164 (79.88%), Query Frame = 0


Query: 9   QMAVPIPKVITFLSSLLQRVSESNDQSHEL----HSAAKVSAFHGLTKPTISIQTYLERI 68
           ++A  +P+V+  LSSLLQRV+E ND +         AA VSAF GLTKP ISI  YLERI
Sbjct: 5   EVAEAVPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERI 64

Query: 69  FKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 128
           F++ANCSPSC+VVAY+YLDR ++R P+L +DSFNVHRLLITSVL + KF+DD+CYNNAY+
Sbjct: 65  FRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYF 124

Query: 129 AKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           A+VGGIS MEMN LE+DFLFG+ F LNVTP  F +YC+ L++E+
Sbjct: 125 ARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEM 168

[Close]

BLAST of CmaCh04G003710 vs. ExPASy Swiss-Prot
Match: Q9FKF6 (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.0e-55
Identity = 105/164 (64.02%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 5   DHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64
           D +  +A  +P V+T +S LLQRVSE+ND    L    K S+F G+TKP+ISI++YLERI
Sbjct: 13  DLQEPLAEIMPSVLTAMSYLLQRVSETND---NLSQKQKPSSFTGVTKPSISIRSYLERI 72

Query: 65  FKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124
           F+YANCS SC++VAY+YLDR V++ P LPI+SFNVHRL+ITSVLVSAKF+DDL YNN YY
Sbjct: 73  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYY 132

Query: 125 AKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           AKVGGIS  EMN+LE+DFLFG+GF+LNVT +TF+ YC +L+ E+
Sbjct: 133 AKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]

BLAST of CmaCh04G003710 vs. ExPASy Swiss-Prot
Match: Q9LJ45 (Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.2e-37
Identity = 70/158 (44.30%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 15  PKVITFLSSLLQRVSESND--QSHELHSAAKVSAFHGLTKPTISIQTYLERIFKYANCSP 74
           P+V+T +S +++++   N+            + AFHG+  P+ISI  YLERI+KY  CSP
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSP 84

Query: 75  SCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGIST 134
           +CFVV YVY+DRL  +HP   + S NVHRLL+T V+++AK LDD+ YNN +YA+VGG+S 
Sbjct: 85  ACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSN 144

Query: 135 MEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAELDI 171
            ++N +E++ LF L F++ V+   F +YC +L  E+ +
Sbjct: 145 ADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182

[Close]

BLAST of CmaCh04G003710 vs. ExPASy TrEMBL
Match: A0A6J1JX61 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111489131 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 7.5e-90
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAE+
Sbjct: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEV 168

[Close]

BLAST of CmaCh04G003710 vs. ExPASy TrEMBL
Match: A0A6J1FSU2 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111446976 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.5e-87
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDH NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRL QRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGIST+EMNLLEIDFLFGLGFQLNVT NTFHTYCSYLRAE+
Sbjct: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 168

[Close]

BLAST of CmaCh04G003710 vs. ExPASy TrEMBL
Match: A0A6J1CIA6 (Cyclin OS=Momordica charantia OX=3673 GN=LOC111011438 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 6.6e-70
Identity = 134/161 (83.23%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 8   NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERIFKY 67
           +Q   PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RIFKY
Sbjct: 5   HQEIAPIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRIFKY 64

Query: 68  ANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKV 127
           ANCSPSCFVVAYVYLDR VQ+HPSLPIDSFNVHRLLITSVL SAKFLDDL YNNAYYAKV
Sbjct: 65  ANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLXSAKFLDDLYYNNAYYAKV 124

Query: 128 GGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           GGISTMEMNLLE+DFLFGLGFQLNVTPNTFHTYCSYL+ E+
Sbjct: 125 GGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEM 162

[Close]

BLAST of CmaCh04G003710 vs. ExPASy TrEMBL
Match: B9RA01 (Cyclin OS=Ricinus communis OX=3988 GN=RCOM_1502450 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.6e-68
Identity = 130/168 (77.38%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADL+      V +PKV+TFLSSLLQRV+ESND SH+LH   ++S FHGLT+P+IS+Q+Y
Sbjct: 1   MADLE---ATVVVMPKVVTFLSSLLQRVAESNDLSHQLH-PQRISVFHGLTRPSISVQSY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFV+AYVYLDR  QR PS PI+SFNVHRLLITSVLVSAKF+DD+ YN
Sbjct: 61  LERIFKYANCSPSCFVIAYVYLDRFAQRQPSFPINSFNVHRLLITSVLVSAKFMDDIYYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGIST EMN+LE+DFLFGLGFQLNVTPNTFHTYCSYL+ E+
Sbjct: 121 NAYYAKVGGISTSEMNILEVDFLFGLGFQLNVTPNTFHTYCSYLQREM 164

[Close]

BLAST of CmaCh04G003710 vs. ExPASy TrEMBL
Match: A0A2C9VSH5 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G130300 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.5e-66
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADL    +  V +PK+ITFLSSLLQRV+ESND +H+LH   ++S FHGLT+P ISIQ+Y
Sbjct: 1   MADL----EATVVMPKIITFLSSLLQRVAESNDHTHQLH-PQRISVFHGLTRPNISIQSY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDR   + PS PI+SFNVHRLLITSVLVSAKFLDD+ YN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRFAHKQPSFPINSFNVHRLLITSVLVSAKFLDDIYYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGIST EMNLLE+DFLFGLGFQLNVTP TF+TYCSYL+ E+
Sbjct: 121 NAYYAKVGGISTAEMNLLEVDFLFGLGFQLNVTPTTFNTYCSYLQREM 163

[Close]

BLAST of CmaCh04G003710 vs. NCBI nr
Match: XP_022992955.1 (cyclin-U4-1-like [Cucurbita maxima])

HSP 1 Score: 339.7 bits (870), Expect = 1.5e-89
Identity = 167/168 (99.40%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAE+
Sbjct: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEV 168

[Close]

BLAST of CmaCh04G003710 vs. NCBI nr
Match: XP_022941693.1 (cyclin-U4-1-like [Cucurbita moschata])

HSP 1 Score: 330.9 bits (847), Expect = 7.2e-87
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDH NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRL QRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGIST+EMNLLEIDFLFGLGFQLNVT NTFHTYCSYLRAE+
Sbjct: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 168

[Close]

BLAST of CmaCh04G003710 vs. NCBI nr
Match: XP_023526236.1 (cyclin-U4-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 329.3 bits (843), Expect = 2.1e-86
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDH NQMAVPIPKVITFLSSLLQRVSESNDQSH+LHSAAKVSAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHQLHSAAKVSAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRL QRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGIS +EMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLR E+
Sbjct: 121 NAYYAKVGGISRVEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRPEV 168

[Close]

BLAST of CmaCh04G003710 vs. NCBI nr
Match: KAG6600208.1 (Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030869.1 Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 160/168 (95.24%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTY 60
           MADLDH NQMAVPIPKVITFLSSLLQRVSESNDQSH+LHSAAK SAFHGLTKPTISIQTY
Sbjct: 1   MADLDHHNQMAVPIPKVITFLSSLLQRVSESNDQSHQLHSAAKASAFHGLTKPTISIQTY 60

Query: 61  LERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYN 120
           LERIFKYANCSPSCFVVAYVYLDRL QRHPSLPID FNVHRLLITSVLVSAKFLDDLCYN
Sbjct: 61  LERIFKYANCSPSCFVVAYVYLDRLAQRHPSLPIDPFNVHRLLITSVLVSAKFLDDLCYN 120

Query: 121 NAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           NAYYAKVGGIST+EMNLLEIDFLFGLGFQLNVT NTFHTYCSYLRAE+
Sbjct: 121 NAYYAKVGGISTVEMNLLEIDFLFGLGFQLNVTLNTFHTYCSYLRAEV 168

[Close]

BLAST of CmaCh04G003710 vs. NCBI nr
Match: XP_022140882.1 (cyclin-U4-1-like [Momordica charantia])

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-69
Identity = 134/161 (83.23%), Postives = 145/161 (90.06%), Query Frame = 0


Query: 8   NQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERIFKY 67
           +Q   PIP+VITFLSSLLQRVSESND   +   A K+SAFHGLT+P ISI +YL+RIFKY
Sbjct: 5   HQEIAPIPRVITFLSSLLQRVSESNDDGGQ---APKISAFHGLTRPAISIHSYLQRIFKY 64

Query: 68  ANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKV 127
           ANCSPSCFVVAYVYLDR VQ+HPSLPIDSFNVHRLLITSVL SAKFLDDL YNNAYYAKV
Sbjct: 65  ANCSPSCFVVAYVYLDRFVQQHPSLPIDSFNVHRLLITSVLXSAKFLDDLYYNNAYYAKV 124

Query: 128 GGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           GGISTMEMNLLE+DFLFGLGFQLNVTPNTFHTYCSYL+ E+
Sbjct: 125 GGISTMEMNLLEVDFLFGLGFQLNVTPNTFHTYCSYLQTEM 162

[Close]

BLAST of CmaCh04G003710 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 241.5 bits (615), Expect = 5.3e-64
Identity = 120/171 (70.18%), Postives = 146/171 (85.38%), Query Frame = 0


Query: 1   MADLDHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHS-AAKVSAFHGLTKPTISIQT 60
           MA+L++ + M+    K+I FLSSLL+RV+ESND +  + + + +VS FHGL++PTI+IQ+
Sbjct: 1   MAELENPSVMS----KLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQS 60

Query: 61  YLERIFKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCY 120
           YLERIFKYANCSPSCFVVAYVYLDR   R PSLPI+SFNVHRLLITSV+V+AKFLDDL Y
Sbjct: 61  YLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYY 120

Query: 121 NNAYYAKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAELDI 171
           NNAYYAKVGGIST EMN LE+DFLFGLGF+LNVTPNTF+ Y SYL+ E+ +
Sbjct: 121 NNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTL 167

[Close]

BLAST of CmaCh04G003710 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 224.9 bits (572), Expect = 5.2e-59
Identity = 108/160 (67.50%), Postives = 136/160 (85.00%), Query Frame = 0


Query: 10  MAVPIPKVITFLSSLLQRVSESNDQ-SHELHSAAKVSAFHGLTKPTISIQTYLERIFKYA 69
           MA  +P VIT +SSLLQRVSE+ND  S       ++SAF+ +TKP+ISI++Y+ERIFKYA
Sbjct: 16  MAEIMPNVITAMSSLLQRVSETNDDLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYA 75

Query: 70  NCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVG 129
           +CS SC++VAY+YLDR +Q+ P LPIDS NVHRL+ITSVLVSAKF+DDLCYNNA+YAKVG
Sbjct: 76  DCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVG 135

Query: 130 GISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           GI+T EMNLLE+DFLFG+GFQLNVT +T++ YCS L+ E+
Sbjct: 136 GITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREM 175

[Close]

BLAST of CmaCh04G003710 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-56
Identity = 105/164 (64.02%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 5   DHRNQMAVPIPKVITFLSSLLQRVSESNDQSHELHSAAKVSAFHGLTKPTISIQTYLERI 64
           D +  +A  +P V+T +S LLQRVSE+ND    L    K S+F G+TKP+ISI++YLERI
Sbjct: 13  DLQEPLAEIMPSVLTAMSYLLQRVSETND---NLSQKQKPSSFTGVTKPSISIRSYLERI 72

Query: 65  FKYANCSPSCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYY 124
           F+YANCS SC++VAY+YLDR V++ P LPI+SFNVHRL+ITSVLVSAKF+DDL YNN YY
Sbjct: 73  FEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEYY 132

Query: 125 AKVGGISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAEL 169
           AKVGGIS  EMN+LE+DFLFG+GF+LNVT +TF+ YC +L+ E+
Sbjct: 133 AKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

[Close]

BLAST of CmaCh04G003710 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38
Identity = 70/158 (44.30%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 15  PKVITFLSSLLQRVSESND--QSHELHSAAKVSAFHGLTKPTISIQTYLERIFKYANCSP 74
           P+V+T +S +++++   N+            + AFHG+  P+ISI  YLERI+KY  CSP
Sbjct: 25  PRVLTIISHVMEKLVARNEWLAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCSP 84

Query: 75  SCFVVAYVYLDRLVQRHPSLPIDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVGGIST 134
           +CFVV YVY+DRL  +HP   + S NVHRLL+T V+++AK LDD+ YNN +YA+VGG+S 
Sbjct: 85  ACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVSN 144

Query: 135 MEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAELDI 171
            ++N +E++ LF L F++ V+   F +YC +L  E+ +
Sbjct: 145 ADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182

[Close]

BLAST of CmaCh04G003710 vs. TAIR 10
Match: AT3G05327.1 (Cyclin family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-36
Identity = 78/159 (49.06%), Postives = 107/159 (67.30%), Query Frame = 0


Query: 15  PKVITFLSSLLQRVSESNDQS-HELHSAA-KVSAFHGLTKPTISIQTYLERIFKYANCSP 74
           P+VIT L+S L+++ + N +  H  H+ A +++ FHG   P++SI  Y ERI +YA CSP
Sbjct: 31  PRVITLLASTLEKMIQKNKKKFHTRHNKADEITMFHGSKAPSLSIYRYTERIHRYAQCSP 90

Query: 75  SCFVVAYVYLDRLVQRHPSLP----IDSFNVHRLLITSVLVSAKFLDDLCYNNAYYAKVG 134
            CFV A+ Y+ R +QR  +      + S NVHRLLITS+LV+AKFL+  CYNNAYYAK+G
Sbjct: 91  VCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVAAKFLERQCYNNAYYAKIG 150

Query: 135 GISTMEMNLLEIDFLFGLGFQLNVTPNTFHTYCSYLRAE 168
           G+ST EMN LE  FL  + F+L +T  TF  +C  L+ E
Sbjct: 151 GVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLMLQKE 189

The following BLAST results are available for this feature:

BLAST of CmaCh04G003710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80513	7.5e-63	70.18	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q9LY16	7.3e-58	67.50	Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1	[more]
Q7XC35	6.8e-56	63.41	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]
Q9FKF6	2.0e-55	64.02	Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1	[more]
Q9LJ45	4.2e-37	44.30	Cyclin-U1-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU1-1 PE=1 SV=1	[more]

BLAST of CmaCh04G003710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JX61	7.5e-90	99.40	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111489131 PE=3 SV=1	[more]
A0A6J1FSU2	3.5e-87	97.02	Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111446976 PE=3 SV=1	[more]
A0A6J1CIA6	6.6e-70	83.23	Cyclin OS=Momordica charantia OX=3673 GN=LOC111011438 PE=3 SV=1	[more]
B9RA01	1.6e-68	77.38	Cyclin OS=Ricinus communis OX=3988 GN=RCOM_1502450 PE=3 SV=1	[more]
A0A2C9VSH5	1.5e-66	76.79	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G130300 PE=3 SV=...	[more]

BLAST of CmaCh04G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992955.1	1.5e-89	99.40	cyclin-U4-1-like [Cucurbita maxima]	[more]
XP_022941693.1	7.2e-87	97.02	cyclin-U4-1-like [Cucurbita moschata]	[more]
XP_023526236.1	2.1e-86	95.83	cyclin-U4-1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6600208.1	1.8e-85	95.24	Cyclin-U4-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030869.1 Cycli...	[more]
XP_022140882.1	1.4e-69	83.23	cyclin-U4-1-like [Momordica charantia]	[more]

BLAST of CmaCh04G003710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44740.1	5.3e-64	70.18	cyclin p4;1	[more]
AT5G07450.1	5.2e-59	67.50	cyclin p4;3	[more]
AT5G61650.1	1.4e-56	64.02	CYCLIN P4;2	[more]
AT3G21870.1	3.0e-38	44.30	cyclin p2;1	[more]
AT3G05327.1	1.2e-36	49.06	Cyclin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 1..176 e-value: 3.5E-77 score: 256.9
None	No IPR available	GENE3D	1.10.472.10		coord: 6..173 e-value: 2.3E-59 score: 202.6
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 1..168
None	No IPR available	PANTHER	PTHR15615:SF101	CYCLIN	coord: 1..168
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 26..150 e-value: 1.9E-41 score: 142.1
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 59..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G003710.1	CmaCh04G003710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0019901	protein kinase binding