CmaCh04G002680 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAGTGGGTTTTTCTTCACACTATTTGTTGAGCTGAAGGCAAGTCTTTCTTCTCTCGTCCTGCTCTAATGCTATTTGTTTACCCGTTTGAGATAGAATGAGTAATGGCAAGTCAGCTGCAAATTTGGTGAACTTTCAGACTATCTTCATTTTGTTTTTGCATCATTTCCTTGTTATAGTTCATCAAGTTTCTTAACTGAATGCTCTCTATAATTTGATTGTGCTGCTGCCATGGACGGCCATGATTCTTGCTTGAAACCACCCTCTATCTAATTCAAAACATTATCAAATTTTGTTTTCGTTACAATTGCCTAAATCTTGTAATTTTATGCCAACAAATCTCTGTTAAAAATAAATTAAAAATTAATGAATTTAGTTGGTATGTAAAATAAATTTTATATCCTTAACTTTATGTAGAATATGTTCGATGATGAAAGCCCTACATCGTAGGGAATGATCATGAGTTTATAAGTGAGGAATACTAACTTCATTGGTATGAGGCCTTTTGGAGAAGTCCAACTCAAAGTCATAATAGCTTATTCTCAATGTGAACAATATCATACCATTGTGGAGAGTCGTGTCCGTTTAACGTAGTAATAATAATAATAATAATGTTGAAGAAAAGAAGTTCAAATTTTATTCACAAAACACCCAATAGCAAAAGTGCCACACGTGTTAGTCTCTTCTCCCACGTGTCATTGCCAAAACCTTAGACTATTGCCACCTCCCCACAACTAGTTTTGGGTTCTCTTTCTTCTTCAAGGTGCAGCTTTCTTCAGCTTTAAAACCTCATTTTTTTGTCAATGAGACAGAAACAGAGAAAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTCTTTTCTTTCAAATTGTTTTTCTGATTGTGTTCTTGTTTTTGATTTGCAAGTGCAGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGGTTAGAAAAGGAAGAAATTTGAAAGCCTAGTTTTAATGAATGCCTCTTTTTTATTTTGGTTTGTAGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA ATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA MKILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVESLCVYGSWIYVVVEH Homology
BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15 Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14 Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14 Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 3.0e-14 Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: A2Y075 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2) HSP 1 Score: 75.1 bits (183), Expect = 3.3e-13 Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: Q941D7 (At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A178W1U1 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g35820 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A0A0KRZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. NCBI nr
Match: XP_022941664.1 (low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022999688.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_022999696.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_023554157.1 low temperature-induced protein lt101.2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. NCBI nr
Match: XP_004143609.2 (uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetical protein Csa_000540 [Cucumis sativus]) HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. NCBI nr
Match: CAE6037970.1 (unnamed protein product [Arabidopsis arenosa]) HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. NCBI nr
Match: XP_023639589.1 (uncharacterized protein LOC111830941 [Capsella rubella]) HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. NCBI nr
Match: NP_565897.1 (Low temperature and salt responsive protein family [Arabidopsis thaliana] >XP_019101250.1 PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Camelina sativa] >XP_020883024.1 salt stress-induced hydrophobic peptide ESI3 [Arabidopsis lyrata subsp. lyrata] >KAG7569699.1 Proteolipid membrane potential modulator [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7574143.1 Proteolipid membrane potential modulator [Arabidopsis suecica] >AAK97701.1 unknown protein [Arabidopsis thaliana] >AAL31117.1 At2g38901/At2g38901 [Arabidopsis thaliana] >AAM15078.1 Expressed protein [Arabidopsis thaliana]) HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 87.8 bits (216), Expect = 3.5e-18 Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16 Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 0
BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14 Identity = 32/48 (66.67%), Postives = 45/48 (93.75%), Query Frame = 0
BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 69.3 bits (168), Expect = 1.3e-12 Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family ) HSP 1 Score: 63.5 bits (153), Expect = 7.1e-11 Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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