CmaCh04G002680 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G002680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionLow temperature and salt responsive protein family
LocationCma_Chr04: 1322623 .. 1323893 (-)
RNA-Seq ExpressionCmaCh04G002680
SyntenyCmaCh04G002680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAGTGGGTTTTTCTTCACACTATTTGTTGAGCTGAAGGCAAGTCTTTCTTCTCTCGTCCTGCTCTAATGCTATTTGTTTACCCGTTTGAGATAGAATGAGTAATGGCAAGTCAGCTGCAAATTTGGTGAACTTTCAGACTATCTTCATTTTGTTTTTGCATCATTTCCTTGTTATAGTTCATCAAGTTTCTTAACTGAATGCTCTCTATAATTTGATTGTGCTGCTGCCATGGACGGCCATGATTCTTGCTTGAAACCACCCTCTATCTAATTCAAAACATTATCAAATTTTGTTTTCGTTACAATTGCCTAAATCTTGTAATTTTATGCCAACAAATCTCTGTTAAAAATAAATTAAAAATTAATGAATTTAGTTGGTATGTAAAATAAATTTTATATCCTTAACTTTATGTAGAATATGTTCGATGATGAAAGCCCTACATCGTAGGGAATGATCATGAGTTTATAAGTGAGGAATACTAACTTCATTGGTATGAGGCCTTTTGGAGAAGTCCAACTCAAAGTCATAATAGCTTATTCTCAATGTGAACAATATCATACCATTGTGGAGAGTCGTGTCCGTTTAACGTAGTAATAATAATAATAATAATGTTGAAGAAAAGAAGTTCAAATTTTATTCACAAAACACCCAATAGCAAAAGTGCCACACGTGTTAGTCTCTTCTCCCACGTGTCATTGCCAAAACCTTAGACTATTGCCACCTCCCCACAACTAGTTTTGGGTTCTCTTTCTTCTTCAAGGTGCAGCTTTCTTCAGCTTTAAAACCTCATTTTTTTGTCAATGAGACAGAAACAGAGAAAGAATTATGGGTTCTGAAACTTTTGTAGAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTGATGTCTCAATTCTTCTCTCCAAATTCTGTTTTCATTTTACAACATTTCTCTGTCTTTTCTTTCAAATTGTTTTTCTGATTGTGTTCTTGTTTTTGATTTGCAAGTGCAGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGGTTAGAAAAGGAAGAAATTTGAAAGCCTAGTTTTAATGAATGCCTCTTTTTTATTTTGGTTTGTAGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA

mRNA sequence

ATGGGACTGAGGTTTCGAATCTGTAGCCATACCCACAAGGTGTTCGATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA

Coding sequence (CDS)

ATGAAAATCCTCAAAATCATATTAGCAATTCTTCTTCCACCACTTGGAGTTTTCCTTCGCTATGGCTGTGGGGTAGAGTTTTGGATTTGTTTGTTGCTGACCATATTGGGATATATCCCTGGAATTATATATGCAATATATGTGCTGGTTGAAAGTTTGTGTGTTTATGGCTCTTGGATCTATGTTGTTGTAGAACACTGA

Protein sequence

MKILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVESLCVYGSWIYVVVEH
Homology
BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: Q9ZNQ7 (Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-15
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 0

Query: 6  IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL +
Sbjct: 9  IIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 3  ILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          +L++ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 6  VLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-14
Identity = 40/48 (83.33%), Postives = 46/48 (95.83%), Query Frame = 0

Query: 3  ILKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          +L++ILAI+LPP+GVFLRY  GVEFWICLLLTILGYIPGIIYA+YVLV
Sbjct: 6  VLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-14
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          +++ILAI+LPP+GVFLRYG  VEFWICLLLT+LGYIPGIIYA+YVLV
Sbjct: 7  IEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy Swiss-Prot
Match: A2Y075 (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-13
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          + I++AI+LPPLGVFL++GCG EFWICLLLT LGYIPGIIYAIY + +
Sbjct: 8  IDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55

BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A6J1KKG3 (low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493964 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: Q941D7 (At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A178W1U1 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g35820 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A6J1FUC5 (low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC111446956 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. ExPASy TrEMBL
Match: A0A0A0KRZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. NCBI nr
Match: XP_022941664.1 (low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022999688.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_022999696.1 low temperature-induced protein lt101.2 [Cucurbita maxima] >XP_023554157.1 low temperature-induced protein lt101.2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. NCBI nr
Match: XP_004143609.2 (uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetical protein Csa_000540 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4   LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
           ++IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 70  VEIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 116

BLAST of CmaCh04G002680 vs. NCBI nr
Match: CAE6037970.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4   LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
           L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 857 LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 903

BLAST of CmaCh04G002680 vs. NCBI nr
Match: XP_023639589.1 (uncharacterized protein LOC111830941 [Capsella rubella])

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4   LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
           L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 67  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 113

BLAST of CmaCh04G002680 vs. NCBI nr
Match: NP_565897.1 (Low temperature and salt responsive protein family [Arabidopsis thaliana] >XP_019101250.1 PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Camelina sativa] >XP_020883024.1 salt stress-induced hydrophobic peptide ESI3 [Arabidopsis lyrata subsp. lyrata] >KAG7569699.1 Proteolipid membrane potential modulator [Arabidopsis thaliana x Arabidopsis arenosa] >KAG7574143.1 Proteolipid membrane potential modulator [Arabidopsis suecica] >AAK97701.1 unknown protein [Arabidopsis thaliana] >AAL31117.1 At2g38901/At2g38901 [Arabidopsis thaliana] >AAM15078.1 Expressed protein [Arabidopsis thaliana])

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 87.8 bits (216), Expect = 3.5e-18
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 51
          L+IILAILLPP+GVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV
Sbjct: 7  LEIILAILLPPVGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLV 53

BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-16
Identity = 40/46 (86.96%), Postives = 45/46 (97.83%), Query Frame = 0

Query: 6  IILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          II+AILLPPLGVFLR+GCGVEFWICL+LT+LGYIPGIIYAIYVL +
Sbjct: 9  IIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54

BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 73.9 bits (180), Expect = 5.3e-14
Identity = 32/48 (66.67%), Postives = 45/48 (93.75%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          ++IILAI+LPPLGVFL++GC VEFWICL+LT+ GY+PGI+YA+Y++ +
Sbjct: 7  VEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54

BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-12
Identity = 31/48 (64.58%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 4  LKIILAILLPPLGVFLRYGCGVEFWICLLLTILGYIPGIIYAIYVLVE 52
          L+++ AI +PP+GVFLRYG G+EFW+CLLLT+  +IPG+IYAIYVL +
Sbjct: 5  LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52

BLAST of CmaCh04G002680 vs. TAIR 10
Match: AT4G30660.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 63.5 bits (153), Expect = 7.1e-11
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 3  ILKIILAILLPPLGVFLRYG-CGVEFWICLLLTILGYIPGIIYAIYVLV 51
          + +II+AILLPPLGV  R G C VEF ICL+LTILGY+PGIIYAIYV+V
Sbjct: 8  LCEIIIAILLPPLGVCFRKGCCTVEFLICLVLTILGYVPGIIYAIYVIV 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZNQ72.1e-1586.96Hydrophobic protein RCI2A OS=Arabidopsis thaliana OX=3702 GN=RCI2A PE=2 SV=1[more]
P681781.0e-1483.33Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=... [more]
P681791.0e-1483.33Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE... [more]
Q9ARD53.0e-1480.85Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE... [more]
A2Y0753.3e-1372.92Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica OX=39946 GN=LTI6B PE=3 S... [more]
Match NameE-valueIdentityDescription
A0A6J1KKG31.8e-1495.74low temperature-induced protein lt101.2 OS=Cucurbita maxima OX=3661 GN=LOC111493... [more]
Q941D71.8e-1495.74At2g38901/At2g38901 OS=Arabidopsis thaliana OX=3702 GN=At2g38905 PE=2 SV=1[more]
A0A178W1U11.8e-1495.74(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g... [more]
A0A6J1FUC51.8e-1495.74low temperature-induced protein lt101.2 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A0A0KRZ21.8e-1495.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175890 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_022941664.13.8e-1495.74low temperature-induced protein lt101.2 [Cucurbita moschata] >XP_022941665.1 low... [more]
XP_004143609.23.8e-1495.74uncharacterized protein LOC101203086 [Cucumis sativus] >KAE8647966.1 hypothetica... [more]
CAE6037970.13.8e-1495.74unnamed protein product [Arabidopsis arenosa][more]
XP_023639589.13.8e-1495.74uncharacterized protein LOC111830941 [Capsella rubella][more]
NP_565897.13.8e-1495.74Low temperature and salt responsive protein family [Arabidopsis thaliana] >XP_01... [more]
Match NameE-valueIdentityDescription
AT2G38905.13.5e-1895.74Low temperature and salt responsive protein family [more]
AT3G05880.11.5e-1686.96Low temperature and salt responsive protein family [more]
AT3G05890.15.3e-1466.67Low temperature and salt responsive protein family [more]
AT1G57550.11.3e-1264.58Low temperature and salt responsive protein family [more]
AT4G30660.17.1e-1173.47Low temperature and salt responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000612Proteolipid membrane potential modulatorPFAMPF01679Pmp3coord: 2..50
e-value: 9.1E-22
score: 77.0
IPR000612Proteolipid membrane potential modulatorPANTHERPTHR21659HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATEDcoord: 3..50
IPR000612Proteolipid membrane potential modulatorPROSITEPS01309UPF0057coord: 7..22
NoneNo IPR availablePANTHERPTHR21659:SF96BNAA04G22250D PROTEINcoord: 3..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002680.1CmaCh04G002680.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane