CmaCh04G002640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh04G002640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	Cma_Chr04: 1311674 .. 1313592 (+)
RNA-Seq Expression	CmaCh04G002640
Synteny	CmaCh04G002640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCACGTTGATGATAGCCTTCAGCAATTTGCCTATCTGTCCGCCTCTCTGTCTCTCTCTGTCTTCTTCCATTTCTTTATTTCCAGACCACTCTGTTCTTCTTCTTCTTCCTTTCCTCCGCACTATATAATCCCTTCCTCCTCTTCCCCACCACCATTTTTGCTTTCTTCATTTCTACTGTTTGCATTTCGCCGGAATCGCGACCGGAACGACGATGATGAGCAACAATAATGCAGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACACCGAAGGAAGCTATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTAAGTCTGGAATTCATTCATTGAATCGCAATGTGAATCGATTGGATTTCATTTTTGTTGATTTCTGTTTTTTGATTTAAAAATTAGGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTCGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGTAAACGATTCCTCTCTTCCTCTCTCTGTGCATGATGAAACTAGTCAATTCGTTACTCGACAATGGCGTTTTCGTAGTTTCTCATAGAAATTTCGGACGGTGGAGATCTGACGTTGGTTTTGTGATGCCATTGAAGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTCGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGGTACACCTTAAAGATCCTACACCTCTTTCGTATTCTAACATTACCCATCTTTATACAGTTAATTTCCTTTTTTTTATTTCCCTTTTTAAATTAACGTAAATTTATAATTTTATTTAGATATTCCCCAAGCCCCACTTATGTCGCTACCGATATCAGTTACAACCACGTAAGCATTTTTATTTCATGTTAAATTATAATTTAAATTAATAAGAATTATTGGAAATATATAAAACGGCGACGTTTCATGGTGAATTACAGAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCCGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCCTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTCCCTTCTCTCTTCTCTTCGCTTCCCCCATTTTTTGTTTAAATTCTTCAAATTAAACGCTGAATTAGAGAGAGATTTGATGAAAATGGAGTTTAAATCCATAAATAAAGAGAGAAGAATGAGAGTGGTTCACGTGAAAGGGTGATTTTAGTGAAGGGTCTCCTCCCCCACTGCCAACTGGCGTCTCTGGGTCCCACGTGGCCAGCTTGATCTGCCGGTCGTGGGGTGGTCTCTTGCTGTCCCTTTCCAGATGTTAATATTCCCTGATGTTAAGGGCTCTTTTGCAAAATCAACTTTTATTCTTTCTTTTTCTGGATTTGTAAATAAAGTGTTAGTGAAATTACCAAAAACATATAATAATTTGTTTAAAACTTTAGTGTGGGTATGATTTAATGAAACTGATATTAGAAAGAACAGTTTGCTTGGTTGTGGAATAATAGGTAAAGGTGGAGGAGAATGCATGCAATGGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGGTAAAAGAAGAGCACAGAGGAATTGA

mRNA sequence

CTCACGTTGATGATAGCCTTCAGCAATTTGCCTATCTGTCCGCCTCTCTGTCTCTCTCTGTCTTCTTCCATTTCTTTATTTCCAGACCACTCTGTTCTTCTTCTTCTTCCTTTCCTCCGCACTATATAATCCCTTCCTCCTCTTCCCCACCACCATTTTTGCTTTCTTCATTTCTACTGTTTGCATTTCGCCGGAATCGCGACCGGAACGACGATGATGAGCAACAATAATGCAGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACACCGAAGGAAGCTATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTCGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTCGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGATATTCCCCAAGCCCCACTTATGTCGCTACCGATATCAGTTACAACCACAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCCGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCCTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTAAAGGTGGAGGAGAATGCATGCAATGGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGGTAAAAGAAGAGCACAGAGGAATTGA

Coding sequence (CDS)

ATGATGAGCAACAATAATGCAGGTCTGTTCGGCGACACTACGCTGACGAAGGTCTTCGTCGGAGGTTTGGCTTGGGAGACACCGAAGGAAGCTATGAGAGATCACTTCGAGAAGTTCGGTGAGATCCTGGAGGCGGTTATCATCTCCGATAAACTCACCGGCAGATCCAAGGGCTATGGATTTGTTACATTCAAGGACGCGGAATCGGCGAAGAAGGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGCCGAGCCAACTGTAATCTCGCTTCGCTTGGAGCTCGACGTGGCTCGAGGTCGGCTTCGGCTACTCCTCCACAAGCTCCTCAGCATCCTGGATCGAACGGCGGTGGACCGAGGACGACGTCAGCACCATCGGGAAACCACGTGCAGTGGTACTACCCGGCGGGGACTTACCCGACGTCGTTTCGTCATCAGCCTCATCAAGCCGTCCCTTTCTACGGATATTCCCCAAGCCCCACTTATGTCGCTACCGATATCAGTTACAACCACAAAGTGGGGTACATGAACGGGCATTACAGGCAGATATATCCGGGGCAGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCGATGGGGATGCCCGCCCACATATACCCTCCCAGTCCCACGGCGGCGGTCCCACCCTCCTCCATTATGTCCAAACCGGCCTCCGTCGCTCCCACCCCAGGTAAAGGTGGAGGAGAATGCATGCAATGGGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGATGATGATGATGATGATGGTAAAAGAAGAGCACAGAGGAATTGA

Protein sequence

MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGHYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAPTPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN

Homology

[Close]

BLAST of CmaCh04G002640 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.3e-60
Identity = 143/273 (52.38%), Postives = 169/273 (61.90%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SNN  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRT 122
           TFKDA++A +ACEDS PIINGRRANCNLASLG R        +P Q P++      G R 
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN------GNRA 123

Query: 123 TSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVG-----YM 182
           T    GNH QWYYP+G      + Q HQAVPFYGY PS  YVA ++++N KVG     YM
Sbjct: 124 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYM 183

Query: 183 NGHYRQIYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIY 242
           NG+Y Q+ P                  G+ MVG A+ ++P Y +Y YHQS A+G      
Sbjct: 184 NGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF----- 243

Query: 243 PPSPTAAVPPSSIMSKPASVAPTPGKGGGECMQ 252
            P P+ + P S       S  P  G  GGE +Q
Sbjct: 244 -PQPSFSKPLS------FSTPPISGTVGGESIQ 256

[Close]

BLAST of CmaCh04G002640 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-22
Identity = 50/85 (58.82%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G002640 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G002640 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G002640 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 3.3e-22
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 12 DTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 71
          DTT TK+FVGGL + T   ++R +FE FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 KACEDSAPIINGRRANCNLASLGAR 97
          +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of CmaCh04G002640 vs. ExPASy TrEMBL
Match: A0A6J1K0I8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489087 PE=4 SV=1)

HSP 1 Score: 557.8 bits (1436), Expect = 2.6e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 278
           TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN
Sbjct: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 277

[Close]

BLAST of CmaCh04G002640 vs. ExPASy TrEMBL
Match: A0A6J1FUE8 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 2.4e-148
Identity = 266/277 (96.03%), Postives = 270/277 (97.47%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 278
           TPGK GGECMQW+EEEE      DDDD+DGKRRAQ+N
Sbjct: 241 TPGKVGGECMQWKEEEE------DDDDNDGKRRAQKN 271

[Close]

BLAST of CmaCh04G002640 vs. ExPASy TrEMBL
Match: A0A6J1JR76 (probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489087 PE=4 SV=1)

HSP 1 Score: 496.5 bits (1277), Expect = 7.2e-137
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TP 243
           TP
Sbjct: 241 TP 242

[Close]

BLAST of CmaCh04G002640 vs. ExPASy TrEMBL
Match: A0A6J1FN68 (probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446973 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 9.4e-137
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TP 243
           TP
Sbjct: 241 TP 242

[Close]

BLAST of CmaCh04G002640 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 439.5 bits (1129), Expect = 1.0e-119
Identity = 222/253 (87.75%), Postives = 231/253 (91.30%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           S+ NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 13  SSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISDKLTGRSKGYGFV 72

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSN GGPR
Sbjct: 73  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNAGGPR 132

Query: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNG 182
           TTSA +  GNHVQWYYPAGT+PT F HQPHQ VPFYGYSPSPTY+ATDISYNHK+GYMNG
Sbjct: 133 TTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYMNG 192

Query: 183 HYRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPT-----AAVPPSSIMSK 242
           HY Q+YPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHI+PPSPT     AAVPP+SIMSK
Sbjct: 193 HYTQMYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSK 252

Query: 243 PASVAPTPGKGGG 248
           P +V P PG  GG
Sbjct: 253 PTTVGPNPGTVGG 264

[Close]

BLAST of CmaCh04G002640 vs. NCBI nr
Match: XP_022992888.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 557.8 bits (1436), Expect = 5.4e-155
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 278
           TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN
Sbjct: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 277

[Close]

BLAST of CmaCh04G002640 vs. NCBI nr
Match: XP_022941685.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 534.6 bits (1376), Expect = 4.9e-148
Identity = 266/277 (96.03%), Postives = 270/277 (97.47%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 278
           TPGK GGECMQW+EEEE      DDDD+DGKRRAQ+N
Sbjct: 241 TPGKVGGECMQWKEEEE------DDDDNDGKRRAQKN 271

[Close]

BLAST of CmaCh04G002640 vs. NCBI nr
Match: KAG7030773.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 530.8 bits (1366), Expect = 7.1e-147
Identity = 264/277 (95.31%), Postives = 269/277 (97.11%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSF HQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFSHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TPGKGGGECMQWEEEEEEEDDDDDDDDDDGKRRAQRN 278
           TPGK GGECMQW+EEEE      D+DD+DGKRRAQ+N
Sbjct: 241 TPGKVGGECMQWKEEEE------DEDDNDGKRRAQKN 271

[Close]

BLAST of CmaCh04G002640 vs. NCBI nr
Match: XP_022992897.1 (probable RNA-binding protein ARP1 isoform X2 [Cucurbita maxima])

HSP 1 Score: 496.5 bits (1277), Expect = 1.5e-136
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TP 243
           TP
Sbjct: 241 TP 242

[Close]

BLAST of CmaCh04G002640 vs. NCBI nr
Match: XP_022941687.1 (probable RNA-binding protein ARP1 isoform X2 [Cucurbita moschata] >KAG6600100.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 496.1 bits (1276), Expect = 1.9e-136
Identity = 241/242 (99.59%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60
           MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG
Sbjct: 1   MMSNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 60

Query: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120
           FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP
Sbjct: 61  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGP 120

Query: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVGYMNGH 180
           RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTY+ATDISYNHKVGYMNGH
Sbjct: 121 RTTSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYIATDISYNHKVGYMNGH 180

Query: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240
           YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP
Sbjct: 181 YRQIYPGQAMVGANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAP 240

Query: 241 TP 243
           TP
Sbjct: 241 TP 242

[Close]

BLAST of CmaCh04G002640 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.8 bits (595), Expect = 1.7e-61
Identity = 143/273 (52.38%), Postives = 169/273 (61.90%), Query Frame = 0


Query: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62
           SNN  G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGYGFV
Sbjct: 4   SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63

Query: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRT 122
           TFKDA++A +ACEDS PIINGRRANCNLASLG R        +P Q P++      G R 
Sbjct: 64  TFKDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKN------GNRA 123

Query: 123 TSAPSGNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSPSPTYVATDISYNHKVG-----YM 182
           T    GNH QWYYP+G      + Q HQAVPFYGY PS  YVA ++++N KVG     YM
Sbjct: 124 TPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYM 183

Query: 183 NGHYRQIYP------------------GQAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIY 242
           NG+Y Q+ P                  G+ MVG A+ ++P Y +Y YHQS A+G      
Sbjct: 184 NGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAIGF----- 243

Query: 243 PPSPTAAVPPSSIMSKPASVAPTPGKGGGECMQ 252
            P P+ + P S       S  P  G  GGE +Q
Sbjct: 244 -PQPSFSKPLS------FSTPPISGTVGGESIQ 256

[Close]

BLAST of CmaCh04G002640 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 181.4 bits (459), Expect = 9.8e-46
Identity = 119/245 (48.57%), Postives = 141/245 (57.55%), Query Frame = 0


Query: 32  MRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 91
           M DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 92  SLGAR-RGSRSASATPPQAPQHPGSNGGGPRTTSAPSGNHVQWYYPAGTYPTSFRHQPHQ 151
           SLG R R      ATPP                    GNH QWYYP+G      + Q HQ
Sbjct: 61  SLGGRLRPKNGNRATPPHV------------------GNHSQWYYPSGFTNQQHQQQNHQ 120

Query: 152 AVPFYGYSPSPTYVATDISYNHKVG-----YMNGHYRQIYP------------------G 211
           AVPFYGY PS  YVA ++++N KVG     YMNG+Y Q+ P                  G
Sbjct: 121 AVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGG 180

Query: 212 QAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIYPPSPTAAVPPSSIMSKPASVAPTPGKGG 252
           + MVG A+ ++P Y +Y YHQS A+G       P P+ + P S       S  P  G  G
Sbjct: 181 RVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSFSKPLS------FSTPPISGTVG 213

[Close]

BLAST of CmaCh04G002640 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-38
Identity = 103/244 (42.21%), Postives = 131/244 (53.69%), Query Frame = 0


Query: 11  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 70
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  KKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTS---APS 130
           + AC D+ P+I+GRRANCNLASLG +R       + P  P H    GGG R  +     S
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR-------SKPSTPNH----GGGGRINNMRVMMS 127

Query: 131 GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSP-SPTYVATDISYNHKVGYMNGHYRQIY- 190
                +  P    P +F H PH  +  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 191 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPA----HIYPPSPTAAVPPSSIMSKPA 241
                 G     A +  P YP    H       P     H+   +P    PP+  M +  
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQVC 240

[Close]

BLAST of CmaCh04G002640 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.2 bits (391), Expect = 7.5e-38
Identity = 101/238 (42.44%), Postives = 129/238 (54.20%), Query Frame = 0


Query: 11  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 70
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  KKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTS---APS 130
           + AC D+ P+I+GRRANCNLASLG +R       + P  P H    GGG R  +     S
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR-------SKPSTPNH----GGGGRINNMRVMMS 127

Query: 131 GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSP-SPTYVATDISYNHKVGYMNGHYRQIY- 190
                +  P    P +F H PH  +  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 191 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPA----HIYPPSPTAAVPPSSIMSK 235
                 G     A +  P YP    H       P     H+   +P    PP+  M +
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQ 234

[Close]

BLAST of CmaCh04G002640 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.8 bits (390), Expect = 9.8e-38
Identity = 102/244 (41.80%), Postives = 131/244 (53.69%), Query Frame = 0


Query: 11  GDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 70
           GDTT TKVFVGGLAWET KE M+ HFE+FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 71  KKACEDSAPIINGRRANCNLASLGARRGSRSASATPPQAPQHPGSNGGGPRTTS---APS 130
           + AC D+ P+I+GRRANCNLASLG +R       + P  P H    GGG R  +     S
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR-------SKPSTPNH----GGGGRINNMRVMMS 127

Query: 131 GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYSP-SPTYVATDISYNHKVGYMNGHYRQIY- 190
                +  P    P +F H PH  +  +GYSP SP Y +   +     G  +G    +Y 
Sbjct: 128 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYG 187

Query: 191 -----PGQAMVGANTLMPMYPLYHYHQSHAMGMPA----HIYPPSPTAAVPPSSIMSKPA 241
                 G     A +  P YP    H       P     H+   +P    PP+  M +  
Sbjct: 188 NRNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSYNPHHYSPPTFSMQQGV 240

The following BLAST results are available for this feature:

BLAST of CmaCh04G002640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.3e-60	52.38	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q9BX46	1.9e-22	58.82	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q6GQD3	3.3e-22	57.65	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	3.3e-22	57.65	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q5ZMA3	3.3e-22	57.65	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of CmaCh04G002640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0I8	2.6e-155	100.00	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1FUE8	2.4e-148	96.03	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JR76	7.2e-137	100.00	probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1FN68	9.4e-137	99.59	probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A0A0KNL6	1.0e-119	87.75	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]

BLAST of CmaCh04G002640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992888.1	5.4e-155	100.00	probable RNA-binding protein ARP1 isoform X1 [Cucurbita maxima]	[more]
XP_022941685.1	4.9e-148	96.03	probable RNA-binding protein ARP1 isoform X1 [Cucurbita moschata]	[more]
KAG7030773.1	7.1e-147	95.31	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022992897.1	1.5e-136	100.00	probable RNA-binding protein ARP1 isoform X2 [Cucurbita maxima]	[more]
XP_022941687.1	1.9e-136	99.59	probable RNA-binding protein ARP1 isoform X2 [Cucurbita moschata] >KAG6600100.1 ...	[more]

BLAST of CmaCh04G002640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	1.7e-61	52.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	9.8e-46	48.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	2.0e-38	42.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	7.5e-38	42.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	9.8e-38	41.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 1.1E-23 score: 94.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..75 e-value: 7.6E-18 score: 64.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 17.318792
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 11..97 e-value: 1.7E-24 score: 87.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..128
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 2..242
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 2..242
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 1.98376E-42 score: 138.132
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 14..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G002640.1	CmaCh04G002640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding