CmaCh04G002180 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G002180
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr04: 1056087 .. 1056696 (+)
RNA-Seq ExpressionCmaCh04G002180
SyntenyCmaCh04G002180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCGACAAATGACAGAGCAAAATAGAACTCTAGTTCTTGCTTACCTCCTGTTCGGCCTCCTCATATCTTCTCAATGCGTTCATTCAATTGGCTTCGTGAATCATTATGAATCGGCTGAATCCAGAGAAGCGCAACCGGGAAGAAAATTCATGTTCGTCGATACAGTGAGTCGATTCCTTCTGCTTTTTACATTTAACTCTTGACAAAATCTTCTTGTTTTTCTCATGAATCGAAAATCTTGCTTCTGTGAGAGAAGATGAAAGGGAGAGAACAGGTGAGAGCTAGCGGTCGGAAGAATCCTTCAGGACCGAACCCCATTGGGAATCGACACCCACCGTCAATCCAAGGCTGAACCAATGGCGTATCTATCAGTTGGTTGAAATTCATTTTGGAGTTCAATCAGCTGAAAATCTGTCAAATTTTCGTTTGTGAAGAAGATGAACACCGTTGAATTTATGGAGTATTTTTTCCCTTGCGTTGGATTTTGATTACTTATTTGAATTTTTAGCGGAATTTCCAGATAAATTATTTATATTTAAAAGTATCTTCATAAATCAGCAATAATTTAATTTTAATTTTAATTTTAATTCATCTACAGAACCGCCC

mRNA sequence

ATGCATCGACAAATGACAGAGCAAAATAGAACTCTAGTTCTTGCTTACCTCCTGTTCGGCCTCCTCATATCTTCTCAATGCGTTCATTCAATTGGCTTCGTGAATCATTATGAATCGGCTGAATCCAGAGAAGCGCAACCGGGAAGAAAATTCATGTTCGTCGATACAATGAAAGGGAGAGAACAGGTGAGAGCTAGCGGTCGGAAGAATCCTTCAGGACCGAACCCCATTGGGAATCGACACCCACCGTCAATCCAAGGCTGAACCAATGGCGTATCTATCAGTTGGTTGAAATTCATTTTGGAGTTCAATCAGCTGAAAATCTGTCAAATTTTCGTTTGTGAAGAAGATGAACACCGTTGAATTTATGGAGTATTTTTTCCCTTGCGTTGGATTTTGATTACTTATTTGAATTTTTAGCGGAATTTCCAGATAAATTATTTATATTTAAAAGTATCTTCATAAATCAGCAATAATTTAATTTTAATTTTAATTTTAATTCATCTACAGAACCGCCC

Coding sequence (CDS)

ATGCATCGACAAATGACAGAGCAAAATAGAACTCTAGTTCTTGCTTACCTCCTGTTCGGCCTCCTCATATCTTCTCAATGCGTTCATTCAATTGGCTTCGTGAATCATTATGAATCGGCTGAATCCAGAGAAGCGCAACCGGGAAGAAAATTCATGTTCGTCGATACAATGAAAGGGAGAGAACAGGTGAGAGCTAGCGGTCGGAAGAATCCTTCAGGACCGAACCCCATTGGGAATCGACACCCACCGTCAATCCAAGGCTGA

Protein sequence

MHRQMTEQNRTLVLAYLLFGLLISSQCVHSIGFVNHYESAESREAQPGRKFMFVDTMKGREQVRASGRKNPSGPNPIGNRHPPSIQG
Homology
BLAST of CmaCh04G002180 vs. NCBI nr
Match: KAG6600053.1 (hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-40
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MHRQMTEQNRTLVLAYLLFGLLISSQCVHSIGFVNHYESAESREAQPGRKFMFVDTMKGR 60
          MHRQMTEQNRTLVLAYLLFGLLISSQCVHSIGFVNH+ESAESR+AQPGRKFMFVDTMKGR
Sbjct: 1  MHRQMTEQNRTLVLAYLLFGLLISSQCVHSIGFVNHFESAESRQAQPGRKFMFVDTMKGR 60

Query: 61 EQVRASGRKNPSGPNPIGNRHPPSIQG 88
          EQVRASGRKNPSGPNPIGNRHPPSIQG
Sbjct: 61 EQVRASGRKNPSGPNPIGNRHPPSIQG 87

BLAST of CmaCh04G002180 vs. NCBI nr
Match: XP_025014776.1 (uncharacterized protein LOC112536340 [Ricinus communis])

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-04
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 0

Query: 10 RTLVLAYLLFGLLISSQC-VHSIGFVNHYESAESR--EAQPGRKF--MFVDTMKGREQVR 69
          R  ++AY L  L I+S+C  +    V H +S +S+   AQ G+ F   +V + K    V+
Sbjct: 3  RKHIIAYFLVALFIASRCHCYLATMVQHADSVDSKLGNAQLGKSFPTKYVFSRKAGTHVK 62

Query: 70 ASGRKNPSGPNPIGNRHPPSI 86
              K PSGPNPIGNRHPPSI
Sbjct: 63 ELIHKAPSGPNPIGNRHPPSI 83

BLAST of CmaCh04G002180 vs. NCBI nr
Match: XP_010658586.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein 46 isoform X1 [Vitis vinifera])

HSP 1 Score: 53.9 bits (128), Expect = 8.0e-04
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 0

Query: 1  MHRQMTEQNRTLVLAYLLFG-LLISSQCVHSIGFVNHYESAESREAQPGR-------KFM 60
          MH+ M +  +  +LA+L+   LL +SQC ++   +       +    P +       ++M
Sbjct: 1  MHKIMPKMKKKQILAHLILAFLLTASQCYYTTAIMLRAMEPVASNTGPAQQRTGSATRYM 60

Query: 61 FVDTMKGREQVRASGRKNPSGPNPIGNRHPPS 85
          F    K  +Q+R +  K PSGPNPIGNRHPPS
Sbjct: 61 FATWKKFGQQIRGNIHKVPSGPNPIGNRHPPS 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6600053.15.3e-4097.70hypothetical protein SDJN03_05286, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_025014776.14.7e-0443.21uncharacterized protein LOC112536340 [Ricinus communis][more]
XP_010658586.18.0e-0434.78PREDICTED: CLAVATA3/ESR (CLE)-related protein 46 isoform X1 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G002180.1CmaCh04G002180.1mRNA