CmaCh04G001850 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh04G001850
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionLOW QUALITY PROTEIN: graves disease carrier protein-like
LocationCma_Chr04: 901183 .. 901808 (+)
RNA-Seq ExpressionCmaCh04G001850
SyntenyCmaCh04G001850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACGGAGGCTAGGGTTGGCGTGATGATGGAAGGAAGGCAGAGAGCTCTCAGTTCTGGTCATGGTGTAGTGGTTTCTGTCGCTCCGAAAAACCATCATCGCTTCAGCAATCGCCGATTCGGACGGTGTCACAGCTTCAATCTAATGGCGTTGCTGGTGCTTTTAGTAAGACCTGCACGGCGCCACTCGCCCGCCTCACGATTCTCTTTCAGGTTTCGTTATTCGAAATAAAACAAAAATGAGAAGTACATTCTCGAGAAGAGAGGAGCCGAGGTGGTCTCCGGACCGCTGAACTAATTTCGATCATTCTTTTAGCTGCTTTGATGGAGACGGAGGAATAAACGATTCTTTTTTTTTAAATTAACAAACACGTCCTCAACTGTGCCTGTGTCCTGATTTCTTAAAAACTGGTATATTGGCCTGTCAATTTAGTGTTATGTTATTGTCTCTGTTGTCATTTTGGGTTGCTGTCATTCTGTCTAGGCTATAATGAGTTTGTACGGCTTGTGCTTTTTATTCTTCATTGATGGGTGTATAATTGCCTTGTTAATTATTACCATATCAGGTGCAAGGGATGCACTCTTGGCACGAGGCTTCACGAATTGCTCTTGAAGAAGGAATAA

mRNA sequence

ATGCAAACGGAGGCTAGGGTTGGCGTGATGATGGAAGGAAGGCAGAGAGCTCTCAGTTCTGGTCATGGTGTAGTGGTTTCTGTCGCTCCGAAAAACCATCATCGCTTCAGCAATCGCCGATTCGGACGGTGTCACAGCTTCAATCTAATGGCGTTGCTGGTGCTTTTAGTAAGACCTGCACGGCGCCACTCGCCCGCCTCACGATTCTCTTTCAGGTGCAAGGGATGCACTCTTGGCACGAGGCTTCACGAATTGCTCTTGAAGAAGGAATAA

Coding sequence (CDS)

ATGCAAACGGAGGCTAGGGTTGGCGTGATGATGGAAGGAAGGCAGAGAGCTCTCAGTTCTGGTCATGGTGTAGTGGTTTCTGTCGCTCCGAAAAACCATCATCGCTTCAGCAATCGCCGATTCGGACGGTGTCACAGCTTCAATCTAATGGCGTTGCTGGTGCTTTTAGTAAGACCTGCACGGCGCCACTCGCCCGCCTCACGATTCTCTTTCAGGTGCAAGGGATGCACTCTTGGCACGAGGCTTCACGAATTGCTCTTGAAGAAGGAATAA

Protein sequence

MQTEARVGVMMEGRQRALSSGHGVVVSVAPKNHHRFSNRRFGRCHSFNLMALLVLLVRPARRHSPASRFSFRCKGCTLGTRLHELLLKKE
Homology
[Close]
BLAST of CmaCh04G001850 vs. ExPASy TrEMBL
Match: A0A6J1FU73 (LOW QUALITY PROTEIN: graves disease carrier protein-like OS=Cucurbita moschata OX=3662 GN=LOC111447325 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MQTEARVGVMMEGRQRALSSGHGVVVSVAPKN 33
          MQTEARVGVMMEGRQRALSSGHG VVSVAPKN
Sbjct: 1  MQTEARVGVMMEGRQRALSSGHGGVVSVAPKN 32

[Close]
BLAST of CmaCh04G001850 vs. NCBI nr
Match: KAG6600028.1 (Mitochondrial substrate carrier family protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.4 bits (363), Expect = 4.6e-31
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 1  MQTEARVGVMMEGRQRALSSGHGVVVSVAPKNHHRFSNRRFGRCHSFNLMALLVLLVRPA 60
          MQTEARVGVMMEGRQRALSSGHG VVSVAPKNHHRFSNRRFGRCHSFNLMALLVLLVRPA
Sbjct: 1  MQTEARVGVMMEGRQRALSSGHGEVVSVAPKNHHRFSNRRFGRCHSFNLMALLVLLVRPA 60

Query: 61 RRHSPASRFSFR 73
          RRHSPASRFSFR
Sbjct: 61 RRHSPASRFSFR 72

[Close]
BLAST of CmaCh04G001850 vs. NCBI nr
Match: KAG7030697.1 (Mitochondrial substrate carrier family protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.7 bits (356), Expect = 3.0e-30
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1  MQTEARVGVMMEGRQRALSSGHGVVVSVAPKNHHRFSNRRFGRCHSFNLMALLVLLVRPA 60
          MQTEARVGVMMEGRQRALSSGHG VVSVAPKNHHRFSNRRFGRCHSFNLMALLVL VRPA
Sbjct: 1  MQTEARVGVMMEGRQRALSSGHGGVVSVAPKNHHRFSNRRFGRCHSFNLMALLVLSVRPA 60

Query: 61 RRHSPASRFSFR 73
          RRHSPASRFSFR
Sbjct: 61 RRHSPASRFSFR 72

[Close]
BLAST of CmaCh04G001850 vs. NCBI nr
Match: XP_022942198.1 (LOW QUALITY PROTEIN: graves disease carrier protein-like [Cucurbita moschata])

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-06
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 1  MQTEARVGVMMEGRQRALSSGHGVVVSVAPKN 33
          MQTEARVGVMMEGRQRALSSGHG VVSVAPKN
Sbjct: 1  MQTEARVGVMMEGRQRALSSGHGGVVSVAPKN 32

The following BLAST results are available for this feature:
BLAST of CmaCh04G001850 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh04G001850 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FU731.5e-0696.88LOW QUALITY PROTEIN: graves disease carrier protein-like OS=Cucurbita moschata O... [more]
BLAST of CmaCh04G001850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600028.14.6e-3198.61Mitochondrial substrate carrier family protein B, partial [Cucurbita argyrosperm... [more]
KAG7030697.13.0e-3097.22Mitochondrial substrate carrier family protein B, partial [Cucurbita argyrosperm... [more]
XP_022942198.13.0e-0696.88LOW QUALITY PROTEIN: graves disease carrier protein-like [Cucurbita moschata][more]
BLAST of CmaCh04G001850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G001850.1CmaCh04G001850.1mRNA