CmaCh03G014830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh03G014830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	small RNA-binding protein 11, chloroplastic
Location	Cma_Chr03: 9233617 .. 9237593 (-)
RNA-Seq Expression	CmaCh03G014830
Synteny	CmaCh03G014830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCAGCAGCAGCAGCAGTGATCAGTGGAGGGCCCAATTCTACACCCACGGCGGCGCGCCTTCCTCTACCACTGTCCCACGCGACGCTCCCAATAATAACTCCATTTCCAAGCCCAGACGCCGCTCCAGGGCTTCGCGGAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCATGCCGCAGGCGCCGTCGTGCCTTTCGGCAGCCACAGGGGTCCGGTCAACCTCAGCTTCGGGCAGGCTGGAGATGAGTTCCATAACAACCACCCCTCCGTGATGCTCCCTTTCTCCGATGGGCGCCATTTTCAGCTCCGCGAGACGCCGAGGGAGCACGGGGTTCCCATCCCGCAGGGGAATCGTGGGCTTTCAGGGGCGACGGCGGAACTCATGGAAATTCAAAATCTGATTGATGAGGATTTGAATTACGATCTGGAGGAATTGGGTATGGAGTTCTGTTGTTCCAATGGGAATGGGAATGGGAATGGGAATGGGAATTACGTGGATGGGTACCTCGGTTGAACAGATAAGATTAATTAAGCAATTAAATTCAATTTAAAATCCAAATTGTTGTAATAGTACGAACGAGAAGAAGAGATTAGGGGTAGACCAAATCAGTAGCTTTGCTGCATGCTCCCTCTTAAAATTTATTTTATTTAATCATCTCTTTTGTTTATTTGTTTGTTTCTTTCTGTGAGTCGATTATGGTAAACATCAAACCAAAATTTATGTTTTTTTTTTTACTTTCACTTGCTCTCATTAATATATCACATTTTAACTTTCTCAATTTTATATCCTATTTTTTTTTAAGAAAAGGTTAAATGCGTAAAATACTAAAATAAATGGAGAATTGAAGTTTCAAATGGAAAAGAATAATTGAAGCATGGTTGGTTGGAGTGTTGTGGTCTAAGTCTAAGTGTTGACTTCAACATTGAATTGAGTGACCAAATGAAGGGGCATTTTTAAAACACGAAGGGCCATCGTGTTTTGGGTAACAAACTAATTTTGTGGGAGTCAATGGTAAACCCCCTCCTAATTACTTAATCTTTTGTATTAAAATTAGTGTATTTGGATCGACCAAGTTTCATTTCACGACCTATTTGTGTATTTTGTCCGAACAAGTTTCATTCACGACTCGGACGATGATCCTAAGCCACCATCACCCTTCTCAATCGTTTTTTTTAATTAAGAAAAAACATCATATATATATATCATGCTTTTGAATTTGGTTATAGATACTAATTTTCTAAAAATATTTGGTTAAAATGTGAACAAGTGGTAAGAAGACGTTTTTACCCATTAATTTTTAAATGGTAGCTGCAATATATATATATTGTAGATGATATTAGATTTGCATCTATCAGTTGGCTTCCGTCATTTTAATTGTTTTTTTGGAAATTAAAATCAAACATTTCGAACTTCTGAAATATAATTGAAATCTATCTGAATTATAATTTTTAATTTCTTCATTAAAAAAAAAAAATGTTTATATCTCTTAAGTAATTGAGCGGATATGGGTATTGTTGGGACGAAGTAAGGAAAGGCAAAAGGAAGCATTTTTATGTAAAAATTGTTTGAGGCTATGGAAATAAAAAACCGCGAATTTGGGGTTTTACTTTTAAGGTGCGAACCCGGGAACCTACAAAGCTCCACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAATAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCTCTTGCCAGCAGACTCATGGTTAGAAGTAATTTCACTTCCCTCTTCCTTTCCTCTTCCTCTGCATTTTACGACACCTTTTCCTTGATTTCCTCGATTTCCCATTTGGAAATTCCCCCCCAATTTCTTGTGTTCCCTGTGATGTTGTTGGAGTCCGTTCTTGGCTTGCAATGTGAATTTTTCCGCTTTGATTCATTTTTCTGTTGCTCCTCTTACTTGTTCCTGTTTCTCTCCTTTTGTTTTAGTTTTTTTTGGCTGCTGTCCTGTTTCTTCTTGGCTTTACCCTTTTGTTAATGATGCTATTTTTGTTCCTTTGGCTTATTTTTCAAGTCTTGTTTCTACTGGAAGTTTATGGTGCTGTCTGCCTGTTTGCTTTTACACCAACGATGAGTTTTATACAAACTGAAGAGAATGTACCATGAAAGTTCTGCGTGGTTCATTATAGATGAGCGAGCAAGATAGATATCCAAAGGCATTGAGTTGAAAATTTCCCCATTTTATTAAGGAATGTTTAAGAAGTTGTGAGAAAGAAATTCAACCTACACGAAAAAGGAAGGGAAAGCTGCAAGAAACTACTTCAATCTCAATTAATAATCCCATCAGCTACTAAAATATTATATGGACTGTAAACTTCCAGGCAGTGAGAGAAGACAAGGTCTTTGACCATGTGCCTCTTTATAAAGAAAATCTTTTATTGAATTGATTTTGTTTGAAACTTTTCTTAAATTCACGTCTCTGTGTGAAATTGACTAGAGATGCAAGCTTGTTTTCTTGTTCATGGAAGTTGTAATTCCTTCAAACTTTTAGCATACTCTGTGACTCTATTTGGCCTACACAACTTTAGTTAGATATCACAAGCTTAAAGGGTAGTTTGTTCATCAAGTTTTGATTCCTGGAAATGGGATCGAAAAAGTAAAGCACAATAATGTTGACACCTTAGATGTCCACTTGCATACAGATAAGGATGTTTAGTGCAAGTGATGTGGATTGGATAATAAAGCATTAATGGAATGCTGGAGCTAATGTATTGAGAATTATGTGGACTTTCGCGTTTCAACAAAGATATTTGTTTCTTTTCATCCTACTCCTTTTACTTTTAAGAATAGGGCCAGAAAGGATTAATAATTTATTTGAAATGTAAAGAAAAAAGAAAGAGTTTAAGATTGACTGTGGCTCTTGGTGTCTATCTATAAAACTTATCGACCTCTTCGCATTGCCTTTTCTCGTACTTTCCTGTCAACTTCCTTTCCTCTATTTTTCATGGTATGTGTTGTCTTGCAATATGAATGACTTTCACCTACCATAACGCTGTCGTTTATCCAGGCATCCTTCACTTTTGGACAATGCCTATCCACATTGAGTTCGTTACCGTCTTATCTATTTGTTAACAGTTTTATTTTTCAGTTTTTCCTGTTCTCAATATTGTTTCTCAAGGTAATTGATTATTTATTATGATCACTGAGTTCTGTTTATGCATGGTGTAAGTTAAAAAGAACCTTTCCAAATTGTCTTTCGAAGTAAACTAAAAGAAAAACAGATCTTCAGTACATATTCTTCTTGATGTTTTGTGAAGTCTTTTGGAATCTCAAGATGTCTATATTAAAAAAAAAATGCAGATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAACTGCATTTCTTTTCTCGTTGAGCGATTAAACTATTATATGATGTCAATTTCCAGCCGAGTCCAATATGCCTTATGATCTTGCTGCTTCACTTATCAACCCATGACAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCTATGCTTGCGCTGGAAAATATGGATTGCAAGGTTAAACTTCATCTAGCTCTGTCATTGCCACATGAGGTAACTCATGGTTTAAAGTTAATGTGCTTTCTCTGTCTCTCGAAACCAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTGGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGA

mRNA sequence

ATGTCTATCAGCAGCAGCAGCAGTGATCAGTGGAGGGCCCAATTCTACACCCACGGCGGCGCGCCTTCCTCTACCACTGTCCCACGCGACGCTCCCAATAATAACTCCATTTCCAAGCCCAGACGCCGCTCCAGGGCTTCGCGGAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCATGCCGCAGGCGCCGTCGTGCCTTTCGGCAGCCACAGGGGTCCGGTCAACCTCAGCTTCGGGCAGGCTGGAGATGAGTTCCATAACAACCACCCCTCCGTGATGCTCCCTTTCTCCGATGGGCGCCATTTTCAGCTCCGCGAGACGCCGAGGGAGCACGGGGTTCCCATCCCGCAGGGGAATCGTGGGCTTTCAGGGGCGACGGCGGAACTCATGGAAATTCAAAATCTGATTGATGAGGATTTGAATTACGATCTGGAGGAATTGGGTATGGAGTTCTGTTGTTCCAATGGGAATGGGAATGGGAATGGGAATGGGAATTACGTGCGAACCCGGGAACCTACAAAGCTCCACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAATAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCTCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCTATGCTTGCGCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTGGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGA

Coding sequence (CDS)

ATGTCTATCAGCAGCAGCAGCAGTGATCAGTGGAGGGCCCAATTCTACACCCACGGCGGCGCGCCTTCCTCTACCACTGTCCCACGCGACGCTCCCAATAATAACTCCATTTCCAAGCCCAGACGCCGCTCCAGGGCTTCGCGGAAGGCGCCGACCACGCTGCTCAACGCCAGCACCGCCAATTTCAGGGACTTGGTGCAGCAGTTCACGGGGTTTCATGCCGCAGGCGCCGTCGTGCCTTTCGGCAGCCACAGGGGTCCGGTCAACCTCAGCTTCGGGCAGGCTGGAGATGAGTTCCATAACAACCACCCCTCCGTGATGCTCCCTTTCTCCGATGGGCGCCATTTTCAGCTCCGCGAGACGCCGAGGGAGCACGGGGTTCCCATCCCGCAGGGGAATCGTGGGCTTTCAGGGGCGACGGCGGAACTCATGGAAATTCAAAATCTGATTGATGAGGATTTGAATTACGATCTGGAGGAATTGGGTATGGAGTTCTGTTGTTCCAATGGGAATGGGAATGGGAATGGGAATGGGAATTACGTGCGAACCCGGGAACCTACAAAGCTCCACGGCGTCGACTGGGCAGATTTCAGCTCCATCATGTGGGCAGCCACCGTCTCCTTCCCTTCACTTTCTAACCTCCGGGGACCCATTCCTCTGAATAATCGACTGGACTCTTCAAAGCGCCAATCTTTGAATCTTCGAGCTTCTTTCTCTGATTACCCTCTTGCCAGCAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAATCGGCTACAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTATTAGCAAAAGATCGATTAACCAAAACACCAAAAGGTTATGCGTTCATCCAATACACTAGCCAAGACGATGCTATGCTTGCGCTGGAAAATATGGATTGCAAGAAATTTGATGGAAGGACGATCTATGTGGAACTTGCAAAACCTGGCAGTGGATCTTTTGGAGGATATCCGGTAACCTCTGGACCCCCGAAAGAGCGGCCTATACCTAAATTGGTGCCAGAAGAGGTAGCAGATTGCTGGTATTGA

Protein sequence

MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTANFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRETPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNGNGNGNGNYVRTREPTKLHGVDWADFSSIMWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVELAKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY

Homology

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BLAST of CmaCh03G014830 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-13
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 243 LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 302
           +AS+L +  L + T E  L E FS  G++ E  +  DR++   KG+ F+ + S D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 303 LENMDCKKFDGRTIYVEL--AKPGSGSFGGYPVTSGPP 339
           L   + ++ +GRTI+V+   AK   G  GGYP+  GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]

BLAST of CmaCh03G014830 vs. ExPASy Swiss-Prot
Match: Q4WJT7 (Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.2e-12
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 243 LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 302
           L+SRL VRNLPY  +E+ L+  FS FG+I E+ +A D  + T KG+A++QY   D A+ A
Sbjct: 299 LSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQA 358

Query: 303 LENMDCKKFDGRTIYV 319
            + +D K F GR +++
Sbjct: 359 YKELDGKHFQGRLMHI 374

[Close]

BLAST of CmaCh03G014830 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-11
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 246 RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 305
           +L +  L + TNE  L++ FS +G+I+EV++ KDR TK  +G+ F+ + + DDA  A+  
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 306 MDCKKFDGRTIYVELAKPGSGS-FGGY 332
           M+ K  DGR I V+ A   SG   GGY
Sbjct: 66  MNGKAVDGRQIRVDQAGKSSGDRRGGY 92

[Close]

BLAST of CmaCh03G014830 vs. ExPASy Swiss-Prot
Match: Q5BGA9 (Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 243 LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 302
           +++RL VRNL Y T E+ L+  FS FG+I E+ +A D    T KG+A++QY   D A+ A
Sbjct: 293 ISARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEA 352

Query: 303 LENMDCKKFDGRTIYV 319
             N+D K F GR +++
Sbjct: 353 YRNLDGKIFQGRLLHI 368

[Close]

BLAST of CmaCh03G014830 vs. ExPASy Swiss-Prot
Match: O93235 (Cold-inducible RNA-binding protein A OS=Xenopus laevis OX=8355 GN=cirbp-a PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 9.8e-11
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 246 RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 305
           +L +  L + TNE+ L++ F+ +G I+EV++ KDR TK  +G+ F+ + + DDA  A+  
Sbjct: 6   KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query: 306 MDCKKFDGRTIYVELAKPGSGS-FGGY 332
           M+ K  DGR I V+ A   SG   GGY
Sbjct: 66  MNGKSVDGRQIRVDQAGKSSGERRGGY 92

[Close]

BLAST of CmaCh03G014830 vs. ExPASy TrEMBL
Match: A0A6J1IJI1 (uncharacterized protein LOC111478005 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478005 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.4e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60
           MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60

Query: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120
           NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE
Sbjct: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120

Query: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNG 173
           TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNG
Sbjct: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNG 172

[Close]

BLAST of CmaCh03G014830 vs. ExPASy TrEMBL
Match: A0A6J1IJY1 (small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478117 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-84
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 357
           AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of CmaCh03G014830 vs. ExPASy TrEMBL
Match: A0A6J1EGU7 (small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433254 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.7e-82
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MWAATVSFPSLSNLRGPIPL+NRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 357
           AKPGSGSF GYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of CmaCh03G014830 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 6.5e-66
Identity = 129/156 (82.69%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 357
           AKPGSGSFGGYP TSGPPKER  P +  E++ADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKER--PNVEQEDIADCWY 154

[Close]

BLAST of CmaCh03G014830 vs. ExPASy TrEMBL
Match: A0A0A0KL21 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.7e-64
Identity = 129/158 (81.65%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MWA TVSFPS+SNLRGPI  NNRL +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALE MDCK FDGR IYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIPK--LVPEEVADCWY 357
           A PGSGSFGGYP  SGPPKERP  +  +  E+VADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of CmaCh03G014830 vs. NCBI nr
Match: XP_022977817.1 (uncharacterized protein LOC111478005 isoform X1 [Cucurbita maxima] >XP_022977818.1 uncharacterized protein LOC111478005 isoform X2 [Cucurbita maxima])

HSP 1 Score: 349.7 bits (896), Expect = 2.9e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60
           MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60

Query: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120
           NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE
Sbjct: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120

Query: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNG 173
           TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNG
Sbjct: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNG 172

[Close]

BLAST of CmaCh03G014830 vs. NCBI nr
Match: KAG6581510.1 (hypothetical protein SDJN03_21512, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034801.1 hypothetical protein SDJN02_04533, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.9 bits (860), Expect = 4.3e-88
Identity = 167/174 (95.98%), Postives = 169/174 (97.13%), Query Frame = 0


Query: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60
           MSI SSSSDQWRAQFYTHGGAPSST VPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 1   MSI-SSSSDQWRAQFYTHGGAPSSTAVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60

Query: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120
           NFRDLVQQFTGFHAAGAVVPFGSH+GPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE
Sbjct: 61  NFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120

Query: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNGNG 175
           TPREHGVPIPQGNRG SGA AELMEIQNLIDEDLNYDLEELGMEFC S+GNGNG
Sbjct: 121 TPREHGVPIPQGNRGFSGAAAELMEIQNLIDEDLNYDLEELGMEFCSSSGNGNG 173

[Close]

BLAST of CmaCh03G014830 vs. NCBI nr
Match: XP_023544848.1 (uncharacterized protein LOC111804320 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.2 bits (835), Expect = 3.4e-85
Identity = 164/174 (94.25%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 1   MSISSSSSDQWRAQFYTHGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60
           MSI SSSSDQWRAQFYT GGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA
Sbjct: 1   MSI-SSSSDQWRAQFYTLGGAPSSTTVPRDAPNNNSISKPRRRSRASRKAPTTLLNASTA 60

Query: 61  NFRDLVQQFTGFHAAGAVVPFGSHRGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRE 120
           NFRDLVQQFTGFHAAGAVVPFGSH+GPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLR+
Sbjct: 61  NFRDLVQQFTGFHAAGAVVPFGSHKGPVNLSFGQAGDEFHNNHPSVMLPFSDGRHFQLRD 120

Query: 121 TPREHGVPIPQGNRGLSGATAELMEIQNLIDEDLNYDLEELGMEFCCSNGNGNG 175
           TPREHGVPIPQG RG  GA AELMEIQNLIDEDLNYDLEELGMEF  SNGNGNG
Sbjct: 121 TPREHGVPIPQGGRGFPGAAAELMEIQNLIDEDLNYDLEELGMEFSSSNGNGNG 173

[Close]

BLAST of CmaCh03G014830 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 321.2 bits (822), Expect = 1.1e-83
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 357
           AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of CmaCh03G014830 vs. NCBI nr
Match: XP_023543104.1 (small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 318.2 bits (814), Expect = 9.3e-83
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 357
           AKPGSGSF GYPVTSGPPKERPIPKLVPEEVADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of CmaCh03G014830 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 164.9 bits (416), Expect = 1.2e-40
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 0


Query: 201 MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 260
           MW+AT+SFPS       +P    L   K     ++AS  +YPLAS++MVRNLP+ST+E+ 
Sbjct: 1   MWSATLSFPSFVASSSSLPNYRNLRFPK-----IKASLFNYPLASKIMVRNLPFSTSEDF 60

Query: 261 LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 320
           L+ EFS FGEIAEV L KD   K  KGYAFIQ+TSQDDA LA+E MD + ++GR IY+++
Sbjct: 61  LKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 120

Query: 321 AKPGSGSFGGYPVTSGPPKERPIP-KLVPEEVADCWY 357
           AKPG   F G P TSGPP++   P +   +EVADCWY
Sbjct: 121 AKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152

[Close]

BLAST of CmaCh03G014830 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-14
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 0


Query: 243 LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 302
           +AS+L +  L + T E  L E FS  G++ E  +  DR++   KG+ F+ + S D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 303 LENMDCKKFDGRTIYVEL--AKPGSGSFGGYPVTSGPP 339
           L   + ++ +GRTI+V+   AK   G  GGYP+  GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]

BLAST of CmaCh03G014830 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-14
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 231 SLNLRASFSDYPL-ASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYA 290
           ++ + A  SD  L A RL V  LPYST E  L E FS FG+I+EV L  D+ T++ +G A
Sbjct: 212 AMEVEADGSDDVLDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMA 271

Query: 291 FIQYTSQDDAMLALENMDCKKFDGRTIYVELAKPGSGSFGGYPVTSGPPK 340
           F+ Y   + A +A++ +D   F GRT+++  AKP + S      +S  PK
Sbjct: 272 FVLYLIPESAKMAMDKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPK 321

[Close]

BLAST of CmaCh03G014830 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-12
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 243 LASRLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLA 302
           ++++L V  L   T +  L++ FS FG+I E  L +D  T+ PKG+ FI + S+DDA  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 303 LENMDCKKFDGRTIYVELAK 323
           L+++D K  DGR I+VE+AK
Sbjct: 65  LKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of CmaCh03G014830 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-12
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 0


Query: 246 RLMVRNLPYSTNENRLQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALEN 305
           RL VRNLPY+  E  L E FS FG+I+EV L  D+ TK  +G A+I Y   + A  A+E 
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354

Query: 306 MDCKKFDGRTIYVELAKPGSGSFGGYPVTSGPPK 340
           +D   F GR +++  AK    S      TS  PK
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPK 388

The following BLAST results are available for this feature:

BLAST of CmaCh03G014830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	3.6e-13	37.76	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q4WJT7	5.2e-12	44.74	Multiple RNA-binding domain-containing protein 1 OS=Neosartorya fumigata (strain...	[more]
Q9DED4	2.6e-11	41.38	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q5BGA9	4.4e-11	43.42	Multiple RNA-binding domain-containing protein 1 OS=Emericella nidulans (strain ...	[more]
O93235	9.8e-11	40.23	Cold-inducible RNA-binding protein A OS=Xenopus laevis OX=8355 GN=cirbp-a PE=1 S...	[more]

BLAST of CmaCh03G014830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IJI1	1.4e-92	100.00	uncharacterized protein LOC111478005 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IJY1	5.3e-84	100.00	small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EGU7	1.7e-82	98.72	small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A1S3AYG0	6.5e-66	82.69	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KL21	2.7e-64	81.65	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV...	[more]

BLAST of CmaCh03G014830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977817.1	2.9e-92	100.00	uncharacterized protein LOC111478005 isoform X1 [Cucurbita maxima] >XP_022977818...	[more]
KAG6581510.1	4.3e-88	95.98	hypothetical protein SDJN03_21512, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023544848.1	3.4e-85	94.25	uncharacterized protein LOC111804320 [Cucurbita pepo subsp. pepo]	[more]
XP_022977992.1	1.1e-83	100.00	small RNA-binding protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_023543104.1	9.3e-83	99.36	small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh03G014830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20030.1	1.2e-40	53.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	2.6e-14	37.76	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08695.1	3.4e-14	40.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	1.1e-12	43.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	1.8e-12	42.55	nucleotide binding;nucleic acid binding;RNA binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 246..319 e-value: 2.3E-24 score: 97.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 247..316 e-value: 1.8E-19 score: 69.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 245..323 score: 18.870832
IPR008889	VQ	PFAM	PF05678	VQ	coord: 50..75 e-value: 3.4E-9 score: 36.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 222..341 e-value: 2.6E-26 score: 94.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	PANTHER	PTHR13952:SF19	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1	coord: 218..354
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 218..354
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 216..327

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G014830.1	CmaCh03G014830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding