CmaCh03G014760 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh03G014760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPolymorphic antigen
LocationCma_Chr03: 9208021 .. 9208418 (-)
RNA-Seq ExpressionCmaCh03G014760
SyntenyCmaCh03G014760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTAAGACCACGCGCCTTCCTCTGCCACGTTGTCGCTTTTGATTGGTTCATACCGACACGAGTGCAGGCCGACGAGTGGGAATGGCTCTTCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAATGAGAAACGAAAAAAAAGAAAAAAAAGAAAAAAAAGCGGAGGAGCGAAATCTCTTTCTTCCACTCTCTCCCCATCGCTTCTTCTTTCGCGCTTCCCTTTTCCCCCTCTCTCTGTCTGTTCGCTCTGATTCAGGGCATCGCTTTGTAGCATTTCTTCGTCGAGACTTGCGTTCTGCCTGTCGCAGGTACTTGCCGTTGAGGAATATAGAGATAGAGACAATTCTGCATTTGTTTTTGTTGTAGATAGGATCAAAAGTTAG

mRNA sequence

ATGTTCGTAAGACCACGCGCCTTCCTCTGCCACGTTGTCGCTTTTGATTGGTTCATACCGACACGAGTGCAGGCCGACGAGTGGGAATGGCTCTTCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAATGAGAAACGAAAAAAAAGAAAAAAAAGAAAAAAAAGCGGAGGAGCGAAATCTCTTTCTTCCACTCTCTCCCCATCGCTTCTTCTTTCGCGCTTCCCTTTTCCCCCTCTCTCTGTCTGTTCGCTCTGATTCAGGGCATCGCTTTGTAGCATTTCTTCGTCGAGACTTGCGTTCTGCCTGTCGCAGGATCAAAAGTTAG

Coding sequence (CDS)

ATGTTCGTAAGACCACGCGCCTTCCTCTGCCACGTTGTCGCTTTTGATTGGTTCATACCGACACGAGTGCAGGCCGACGAGTGGGAATGGCTCTTCCCGAATGCGTACACCCCAAAATACCCTTCTGTCTCACAGAGAATGAGAAACGAAAAAAAAGAAAAAAAAGAAAAAAAAGCGGAGGAGCGAAATCTCTTTCTTCCACTCTCTCCCCATCGCTTCTTCTTTCGCGCTTCCCTTTTCCCCCTCTCTCTGTCTGTTCGCTCTGATTCAGGGCATCGCTTTGTAGCATTTCTTCGTCGAGACTTGCGTTCTGCCTGTCGCAGGATCAAAAGTTAG

Protein sequence

MFVRPRAFLCHVVAFDWFIPTRVQADEWEWLFPNAYTPKYPSVSQRMRNEKKEKKEKKAEERNLFLPLSPHRFFFRASLFPLSLSVRSDSGHRFVAFLRRDLRSACRRIKS
Homology
[Close]
BLAST of CmaCh03G014760 vs. ExPASy TrEMBL
Match: A0A0A0KMB8 (Polymorphic antigen OS=Cucumis sativus OX=3659 GN=Csa_6G526360 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.7e-09
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 29 EWLFPNAYTPKYPSVSQRMRNEKKEKKEKKAEERNLFLPLSPHRFFFRASLFPLSLSVRS 88
          +WL PNAYTPKYPS SQ MRNEK+       EE+NLFLPLSP       S    SL V S
Sbjct: 14 KWLSPNAYTPKYPSASQGMRNEKR-------EEQNLFLPLSPPPIASSLSPPLPSLFVSS 73

Query: 89 DSGHRFVAFL 99
          D GHRF AF+
Sbjct: 74 DLGHRFQAFV 76

[Close]
BLAST of CmaCh03G014760 vs. NCBI nr
Match: KGN49502.1 (hypothetical protein Csa_002734 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 29 EWLFPNAYTPKYPSVSQRMRNEKKEKKEKKAEERNLFLPLSPHRFFFRASLFPLSLSVRS 88
          +WL PNAYTPKYPS SQ MRNEK+       EE+NLFLPLSP       S    SL V S
Sbjct: 14 KWLSPNAYTPKYPSASQGMRNEKR-------EEQNLFLPLSPPPIASSLSPPLPSLFVSS 73

Query: 89 DSGHRFVAFL 99
          D GHRF AF+
Sbjct: 74 DLGHRFQAFV 76

The following BLAST results are available for this feature:
BLAST of CmaCh03G014760 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh03G014760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMB88.7e-0958.57Polymorphic antigen OS=Cucumis sativus OX=3659 GN=Csa_6G526360 PE=4 SV=1[more]
BLAST of CmaCh03G014760 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49502.11.8e-0858.57hypothetical protein Csa_002734 [Cucumis sativus][more]
BLAST of CmaCh03G014760 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G014760.1CmaCh03G014760.1mRNA